BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645623|ref|NP_207799.1| site-specific recombinase
[Helicobacter pylori 26695]
(186 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223668.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 185 6e-49
ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 168 9e-44
ref|NP_223335.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMIL... 77 3e-16
ref|NP_223642.1| putative [Helicobacter pylori J99] 27 0.34
ref|NP_223066.1| putative [Helicobacter pylori J99] 26 0.57
ref|NP_223644.1| putative [Helicobacter pylori J99] 26 0.75
ref|NP_223417.1| putative [Helicobacter pylori J99] 26 0.75
ref|NP_223645.1| putative [Helicobacter pylori J99] 25 0.98
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 25 1.3
ref|NP_224003.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 24 2.2
ref|NP_223824.1| putative transporter [Helicobacter pylori ... 24 2.8
ref|NP_223586.1| putative [Helicobacter pylori J99] 24 2.8
ref|NP_223415.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE L... 23 3.7
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 23 3.7
>ref|NP_223668.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 357
Score = 185 bits (470), Expect = 6e-49
Identities = 91/148 (61%), Positives = 114/148 (76%)
Query: 12 SHLKVKRLRLLNEEMLVNFLFELAKQRKINSMAKYVMYIRQFFDYLDRTKHYEFYFSLKN 71
+ +K+K LR L EE +++FLF L K RK +SMAKYVM +RQFFDYLDR ++Y F F LKN
Sbjct: 86 NRIKLKSLRNLAEEQVIDFLFGLVKNRKPSSMAKYVMVLRQFFDYLDRKRNYSFDFELKN 145
Query: 72 IAFAKHKDNLPKHLNSKDLKSFIYTLINYRTRSSYEKRNKCILLLIILGGLRKSEVFNLE 131
++FAK + LPKHLN D K+FI L+ Y ++S+EKRN+CILLLI LGGLRK E +LE
Sbjct: 146 LSFAKKEMYLPKHLNKNDFKAFIQALLKYHPKTSFEKRNQCILLLIALGGLRKFEALDLE 205
Query: 132 LRNIVLEKEHYILLIKGKNNKERKAFIK 159
L+NI LE HY LLIKGKNNKER A+I+
Sbjct: 206 LKNIALENNHYRLLIKGKNNKERYAYIE 233
>ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 331
Score = 168 bits (425), Expect = 9e-44
Identities = 77/119 (64%), Positives = 103/119 (85%)
Query: 41 NSMAKYVMYIRQFFDYLDRTKHYEFYFSLKNIAFAKHKDNLPKHLNSKDLKSFIYTLINY 100
+ MAKYVMY+RQFFDYLDR + Y F F+LKN+AFAK K++LP+HLN KDLKSF+ TL++Y
Sbjct: 91 SKMAKYVMYLRQFFDYLDRKRRYGFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDY 150
Query: 101 RTRSSYEKRNKCILLLIILGGLRKSEVFNLELRNIVLEKEHYILLIKGKNNKERKAFIK 159
+ +S+EKRNKCILL++ILGGLRK EV N+EL++I +E+++Y +LI+GK KERKA+IK
Sbjct: 151 KPATSFEKRNKCILLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIK 209
>ref|NP_223335.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori
J99]
Length = 356
Score = 77.0 bits (188), Expect = 3e-16
Identities = 44/157 (28%), Positives = 80/157 (50%), Gaps = 8/157 (5%)
Query: 11 ASHLKVKRLRLLNEEMLVNFLFELAKQRKINSMAKYVMYIRQFFDYLDRT------KHYE 64
A L +K L+ ++E ML FL + + Y + + F Y+D+ K Y
Sbjct: 87 AQKLSLKSLKNIDEVMLAEFLSIYTGGLSLATKKNYRIALLGLFSYIDKQNQDKNEKSYI 146
Query: 65 FYFSLKNIAFAKHK--DNLPKHLNSKDLKSFIYTLINYRTRSSYEKRNKCILLLIILGGL 122
+ +LKNI+ + LP HLN+++L+ F+ ++ + RN+ ++ +I+ G+
Sbjct: 147 YNITLKNISGVNQSAGNKLPTHLNNEELEKFLESIDKIEMSAKVRARNRLLIKIIVFTGM 206
Query: 123 RKSEVFNLELRNIVLEKEHYILLIKGKNNKERKAFIK 159
R +E L++++ LE Y +LIKGK +K R +K
Sbjct: 207 RSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLK 243
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 26.9 bits (58), Expect = 0.34
Identities = 16/77 (20%), Positives = 42/77 (53%), Gaps = 3/77 (3%)
Query: 37 QRKINSMAKYVMYIRQFFDYLDRTKHYEFYFSLKNIAFAKHKDNLPKHLNSKDLKSFIYT 96
++ + + +Y + F D++K F +K++AFAK K+ + K +++ +K F+
Sbjct: 6 RKNLKDLKNIFLYWYEMFGSNDKSKDMMKAF-MKDLAFAKDKNEVIKAQDNELVKEFMQE 64
Query: 97 L--INYRTRSSYEKRNK 111
L ++++ + + + N+
Sbjct: 65 LSSLSFKEQLEFYQTNR 81
>ref|NP_223066.1| putative [Helicobacter pylori J99]
Length = 167
Score = 26.2 bits (56), Expect = 0.57
Identities = 21/74 (28%), Positives = 37/74 (49%), Gaps = 9/74 (12%)
Query: 43 MAKYVMYIRQFFDYLDRTKHYEFYFSLKNIAFAKHKDNLPKHLNSKDLKSFIYTLINY-- 100
+AK+ +++ F YL+ K E Y +KNI K+ L +L + L++ T I+
Sbjct: 62 IAKHDEFLKCFEGYLECIKSKEHYKPIKNI----RKNMLYAYLEALGLENLTKTNIDVFD 117
Query: 101 ---RTRSSYEKRNK 111
+ +S YE+ K
Sbjct: 118 SKGKIKSRYEENYK 131
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 25.8 bits (55), Expect = 0.75
Identities = 17/79 (21%), Positives = 38/79 (47%), Gaps = 1/79 (1%)
Query: 18 RLRLLNEEMLVNFLFELAKQRKINSMAKYVMYIRQFFDYLDRTKHYEFYFSL-KNIAFAK 76
+L + E + FELAK+ I + + ++ ++ ++D+ + F + + + I K
Sbjct: 253 KLNTNDNEEVKKLEFELAKEVHILILEQQLLSATNYYSWIDKDDNANFAWKMHRLINENK 312
Query: 77 HKDNLPKHLNSKDLKSFIY 95
K+N N+ +K F +
Sbjct: 313 LKENHLSANNANKIKQFFF 331
>ref|NP_223417.1| putative [Helicobacter pylori J99]
Length = 185
Score = 25.8 bits (55), Expect = 0.75
Identities = 27/109 (24%), Positives = 46/109 (41%), Gaps = 4/109 (3%)
Query: 82 PKHLNSKDLKSFIYTLINY--RTRSSYEKRNKCILLLIILGGLRK--SEVFNLELRNIVL 137
PK + DL + YT++ S + +L+L L K + FN+ +
Sbjct: 43 PKTYTAMDLNNQEYTIMGDLDSLNISPDPNTPTLLILSALDNSLKDYAPTFNVLKKTFKD 102
Query: 138 EKEHYILLIKGKNNKERKAFIKIAQTDIDTLAPLIRILLESIAKNLLSH 186
ILL + ++ K FI +QTD+ L P L + + + L+H
Sbjct: 103 RLRVLILLNQPYSSDAIKGFIAPSQTDLMILNPKDTALFDHLNHDALNH 151
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 25.4 bits (54), Expect = 0.98
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 124 KSEVFNLELRNIVLEKEHYILLIKGKNNKERKAFIKIAQTDIDTL 168
++E+ + E + KEHY KNN + ++K D++TL
Sbjct: 2037 RAEIKSEESKYKAFNKEHYFNEESLKNNASKLDYLKQELKDLETL 2081
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 25.0 bits (53), Expect = 1.3
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 123 RKSEVFNLELRNIVLEKEHYILLIKGKNNKERKAFIKI-AQTDIDTLAPLIRILLES 178
R S+++ E+R+ Y+ L +NK+ + + KI Q DI PL I +++
Sbjct: 347 RNSDLY--EIRSSGYVDNDYVFLFHNTDNKDHEFYFKILGQKDIQIKKPLNPIAIKA 401
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 24.6 bits (52), Expect = 1.7
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 29 NFLFELAKQRKINSMAKYVMYIRQFFDYLDRTKHYEFYFSLKNIAFAKHKD--NLPKHLN 86
N +F A + I K + + +R K Y KN+ K+KD PK
Sbjct: 154 NIMFFSANEHLIKQFEKEI-------EKYNRNKDYSKQIDFKNLKSVKNKDFYRAPKDSL 206
Query: 87 SKDLKSFIY 95
K++ F Y
Sbjct: 207 MKEIALFYY 215
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 24.3 bits (51), Expect = 2.2
Identities = 9/24 (37%), Positives = 18/24 (74%)
Query: 13 HLKVKRLRLLNEEMLVNFLFELAK 36
+LK+ +++N+E+L+ +F LAK
Sbjct: 962 NLKIALRKIINDEVLLENIFNLAK 985
>ref|NP_223824.1| putative transporter [Helicobacter pylori J99]
Length = 443
Score = 23.9 bits (50), Expect = 2.8
Identities = 13/56 (23%), Positives = 28/56 (49%)
Query: 5 YSLTISASHLKVKRLRLLNEEMLVNFLFELAKQRKINSMAKYVMYIRQFFDYLDRT 60
+ LT + L + L + + +++ + K + NS A Y++Y+ FF+ + T
Sbjct: 160 FLLTAILTLLSLLMLLKVKDAPKISYQIKNIKAYQPNSKALYLLYLSSFFEKMFMT 215
>ref|NP_223586.1| putative [Helicobacter pylori J99]
Length = 251
Score = 23.9 bits (50), Expect = 2.8
Identities = 14/49 (28%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Query: 5 YSLTISASHLKVKRLR-LLNEEMLVNFLFELAKQRKINSMAKYVMYIRQ 52
+SL + + +K L+ +LN V+F F L Q +S+A+ ++Q
Sbjct: 150 FSLEQESKRINLKALQNILNNAKSVHFKFVLESQNAAHSIAEIQSLLKQ 198
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 23.5 bits (49), Expect = 3.7
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 135 IVLEKEHYILLIKGKNNKERKAFIKIAQTDID 166
I L Y+ + GK+ K +AF KI+ DI+
Sbjct: 220 IALPCSDYVGRVIGKDGKNIEAFKKISGVDIE 251
>ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE [Helicobacter
pylori J99]
Length = 422
Score = 23.5 bits (49), Expect = 3.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 63 YEFYFSLKNIAFAKHKDNLPKHLNS 87
YE + +KN+ + +++N K LN+
Sbjct: 255 YEQFLKIKNLKWQDYRENALKRLNA 279
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 23.5 bits (49), Expect = 3.7
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 112 CILLLIILGGLRKS-------EVFNLELRNIVLEKEHYILLIKGKNNKERKAFIKI 160
C+LL +IL + + V + ++E E+Y KG ++AF+++
Sbjct: 34 CLLLFLILSDVSRLISSKDFLYVIQSHPKQTLIEDENYFYANKGLYKTNKEAFLRV 89
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.326 0.141 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,724
Number of Sequences: 1491
Number of extensions: 9632
Number of successful extensions: 44
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 18
length of query: 186
length of database: 494,079
effective HSP length: 73
effective length of query: 113
effective length of database: 385,236
effective search space: 43531668
effective search space used: 43531668
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)