>pdb|1CY7|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'-Thymidine
           Monophosphate
 pdb|1CY8|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'-Thymidine
           Monophosphate And 3'-Thymidine Monophosphate
 pdb|1CY6|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 3' Thymidine
           Monophosphate
 pdb|1CY4|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'ptptptp3'
 pdb|1CY1|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'ptptpt
 pdb|1CY2|A Chain A, Complex Of E.Coli Dna Topoisomerase I With Tptptp3'
 pdb|1CY0|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 3'-5'-Adenosine
           Diphosphate
          Length = 599

 Score =  412 bits (1059), Expect = e-116
 Identities = 242/589 (41%), Positives = 362/589 (61%), Gaps = 42/589 (7%)

Query: 2   KHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDL---------------SKFALGIKID 46
           K L+IVESPAKAKTI  +L  +Y V +S GH+RDL               +K A   K D
Sbjct: 5   KALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKKD 64

Query: 47  ETGFTPN-------------YVVDKDHKELVKQIIELSKKASITYIATDEDREGEAIGYH 93
           E G   N             Y V    +++V ++ +L++KA   Y+ATD DREGEAI +H
Sbjct: 65  ERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWH 124

Query: 94  VACLIGGKLESYPRIVFHEITQNAILNALKTPRKIDMSKVNAQQARRFLDRIVGFKLSSL 153
           +  +IGG    Y R+VF+EIT+NAI  A   P ++++ +VNAQQARRF+DR+VG+ +S L
Sbjct: 125 LREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVSPL 184

Query: 154 IASKITKGLSAGRVQSAALKLVIDKEREIKAFKPLTYFTLDAYFESHL-EAQLISYKGNK 212
           +  KI +GLSAGRVQS A++LV+++EREIKAF P  ++ +DA   +   EA  +      
Sbjct: 185 LWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQN 244

Query: 213 LKAQELIDEKKAQEIKNELEKESYAISSIVKKSKKSPTPPPFMTSTLQQSASSLLGFSPT 272
            K    +++++ Q   + LEK  Y++     K   S    PF+TSTLQQ+AS+ LGF   
Sbjct: 245 DKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVK 304

Query: 273 KTMSIAQKLYEGVATPQGVMGVITYMRTDSLNIAKEALEEARNKILKDYGKDYLPPKAKV 332
           KTM +AQ+LYE         G ITYMRTDS N++++A+   R  I  ++GK YLP     
Sbjct: 305 KTMMMAQRLYEA--------GYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQ 356

Query: 333 YSSKNKNAQEAHEAIRPTSIILEPNALKDYLKPEELRLYTLIYKRFLASQMQDALFESQS 392
           Y+SK +N+QEAHEAIRP+ + +   +LKD ++ +  +LY LI+++F+A QM  A ++S +
Sbjct: 357 YASK-ENSQEAHEAIRPSDVNVMAESLKD-MEADAQKLYQLIWRQFVACQMTPAKYDSTT 414

Query: 393 VVVACEKGEFKASGRKLLFDGYYKI---LGNDDKDKLLPNLKENDPIKLEKLESNAHVTE 449
           + V       KA GR L FDG+ K+   L   D+D++LP + + D + L +L    H T+
Sbjct: 415 LTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTK 474

Query: 450 PPARYSEASLIKVLESLGIGRPSTYAPTISLLQNRDYIKVEKKQISALESAFKVIEILEK 509
           PPAR+SEASL+K LE  GIGRPSTYA  IS +Q+R Y++VE ++  A +    V + LE+
Sbjct: 475 PPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEE 534

Query: 510 HFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMDKIEAGKKN 558
           +F E+++  F+A +E  LD +A ++A+++ VL  F+  F  +++  +K+
Sbjct: 535 NFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKD 583