>pdb|1IW7|A Chain A, Crystal Structure Of The Rna Polymerase Holoenzyme From
           Thermus Thermophilus At 2.6a Resolution
 pdb|1IW7|B Chain B, Crystal Structure Of The Rna Polymerase Holoenzyme From
           Thermus Thermophilus At 2.6a Resolution
 pdb|1IW7|K Chain K, Crystal Structure Of The Rna Polymerase Holoenzyme From
           Thermus Thermophilus At 2.6a Resolution
 pdb|1IW7|L Chain L, Crystal Structure Of The Rna Polymerase Holoenzyme From
           Thermus Thermophilus At 2.6a Resolution
          Length = 315

 Score =  157 bits (396), Expect = 2e-39
 Identities = 96/296 (32%), Positives = 163/296 (54%), Gaps = 16/296 (5%)

Query: 28  LAPFEFGYAVTLAHPIRRLLLLSSVGYAPVGLKIEGVHHEFDSLRGVTEDVSLFIMNLKN 87
           L P E G+ VTL +P+RR+LL S  G A   + IE V HEF ++ GV EDV   I+NLK 
Sbjct: 25  LEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKE 84

Query: 88  --IRFIAKALVGQDSSLENQSVVVDYSFKGPMELRARD-LNSEQIEIVNPEMPLATINED 144
             +RF+  +L         Q+V +    +GP E++ARD L    +EI+NP++ +AT+ E 
Sbjct: 85  LVVRFLNPSL---------QTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEG 135

Query: 145 AQLNFSLIIYKGMGYVPSENTRELMPEGYMPLDGSFTPIKKVVYEIENVLVEGDPNYEKI 204
            +LN  + + +G+GYVP+E          +P+D  F+P+++V +++E+  +    + +K+
Sbjct: 136 GRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKL 195

Query: 205 IFDIETDGQIDPYKAFLSAVKVMSKQLGVFGERPIANT----EYSGDYAQRDDAKDLSAK 260
              I TDG + P +A   AV+++ + L  F     A      E     A  +  ++L   
Sbjct: 196 TLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQAAAVAAPEEAKEPEAPPEQEEELDLP 255

Query: 261 IESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGY 316
           +E + LS R  + L + GI+ V  L+ ++ ++LK +  +G++S +EI E L   G+
Sbjct: 256 LEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGF 311