>pdb|3PJR|A Chain A, Helicase Substrate Complex
 pdb|1PJR|   Structure Of Dna Helicase
 pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
          Length = 724

 Score =  369 bits (946), Expect = e-103
 Identities = 249/693 (35%), Positives = 374/693 (53%), Gaps = 49/693 (7%)

Query: 6   KSILDHLNGAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFT 65
           + +L HLN  Q+ A    +GPLLI+AGAGSGKT+ LT R+AYL+    V   N L +TFT
Sbjct: 6   EQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT 65

Query: 66  NKASKEMQERALKLLKNQALIPPLLCTFHRFGLLFLRQHMNLLKRACDFSVLDSDE---- 121
           NKA++EM+ER   LL   A     + TFH   +  LR+ ++ +    +FS+LD  +    
Sbjct: 66  NKAAREMRERVQSLLGGAAE-DVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSV 124

Query: 122 VKTLCKQLKIS-------NFRASISQIKNGMM---DLSMQDSECYK-----AYELYQNAL 166
           +KT+ K+  I            +IS  KN ++     + + S  Y+      Y+ YQ  L
Sbjct: 125 MKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRL 184

Query: 167 KKDNLVDFDDLLFLSLKILQDNETIAKETSERYHYIMVDEYQDTNALQLEFLKKLSFTHH 226
            +++ +DFDDL+  ++++      +      ++ YI +DEYQDTN  Q   +KKL+    
Sbjct: 185 LRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQ 244

Query: 227 NLCVVGDDDQSIYGFRGADISNILNFSKHFKGAKIVKLETNYRSSAEILACANSLISHNQ 286
           N+C VGD DQSIY +RGADI NIL+F + +  AK++ LE NYRS+  IL  AN +I HN 
Sbjct: 245 NICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNV 304

Query: 287 HRHIKTLQSFKGSHKSVVCKEYLTQKEESLDVAYQIKALLKKGE-NLENIAILYRLNGLS 345
           +R  K + +     K ++  E + + +E+  VA +I+  +++GE    + A+LYR N  S
Sbjct: 305 NRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQS 364

Query: 346 RSIEESLNALNIPYRLIGALSFYERAEIKDALAFMHLVAKKDDRFFIKRVLNKPPRGLGK 405
           R +EE L   NIPY+++G L FY+R EIKD LA++ ++A  DD   + R++N P RG+G 
Sbjct: 365 RVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGA 424

Query: 406 ITQEWIFSLLDEEGLNLEEALKLGAFK-DKLNPKNEYALKQFIAMIGRLREAFE-ISVEE 463
            T + +     +  L+L EA  LG  +   L  K   AL  F + + +  +  E +SV E
Sbjct: 425 STIDKLVRYAADHELSLFEA--LGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTE 482

Query: 464 FCSRFLEETNLLKSYEKEDNYEEREGF--VKELLTLVKEYFKTNPTHSLLDFLNESVL-- 519
                L+++   +  + E   E +     + E L++ K +   +   SL+ FL +  L  
Sbjct: 483 LVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALIS 542

Query: 520 ---DAHNTENAQK---VSCMSVHMSKGLEFKHVFVIGLEEGFFPH-RGFNQESDLEEERR 572
              +   TE A +   V  M++H +KGLEF  VF+IG+EEG FPH R    + ++EEERR
Sbjct: 543 DLDELDGTEQAAEGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERR 602

Query: 573 LAYVAITRAKEELQLSYVKERSYFGRKISCSPSVFLEE--AQLL--------NQDNPPKQ 622
           LAYV ITRA+EEL L+  + R+ FG      PS FL E  A LL            P   
Sbjct: 603 LAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLLETASRRQAGASRPAVS 662

Query: 623 DHQKDAPI---KVGDLIRHKIFGTGRVLGVEKG 652
             Q    +   KVGD   H+ +G G V+ V  G
Sbjct: 663 RPQASGAVGSWKVGDRANHRKWGIGTVVSVRGG 695