>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
          Length = 780

 Score =  248 bits (632), Expect = 2e-66
 Identities = 207/637 (32%), Positives = 318/637 (49%), Gaps = 43/637 (6%)

Query: 8   LKTLNVKSLLEALLVYTPKGYKDLNLLERFETGLSGVL-----EVGILEKRNYAKVLKIF 62
           LK L +++L + LL + P+ Y+D   + +    L G       ++  +E + +  +  + 
Sbjct: 131 LKKLGIETLRD-LLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKIVSVETKKFQNMNILT 189

Query: 63  AYSKRFYKNLELVFFNYSAFH-HSQFKTGESLFIYGKLEQSSFNQAYIINTPKIITKFG- 120
           A       ++ L +FN      + +  TG+ +F+ G ++ +++   Y I+  ++  K G 
Sbjct: 190 AVLSDGLVHVPLKWFNQDYLQTYLKQLTGKEVFVTGTVKSNAYTGQYEIHNAEVTPKEGE 249

Query: 121 ---KISLIFKKV-----KNHKKI-QENLQKLI-SLENLKKEGVKENIAHLLLEIFFPTPH 170
              +I  I++       K  +KI +EN+  L  SL+    E + E    L ++  +   H
Sbjct: 250 YVRRILPIYRLTSGISQKQMRKIFEENIPSLCCSLKETLPERILEKRKLLGVKDAYYGMH 309

Query: 171 FVKDF-ETNKNFPSQHLNALKYIEMLFYMKNLERKKLQFGAKIACPNNNERLKAFIASLP 229
           F K F    K         L  +++ F     ER+K      I      +  + FI SLP
Sbjct: 310 FPKTFYHLEKARERLAYEELFVLQLAFQKIRKEREK---HGGIPKKIEGKLAEEFIKSLP 366

Query: 230 FKLTRDQQNAIKEIQNDLTSSIACKRLIIGDVGCGKTMVILASMVLTYPN--KTLLMAPT 287
           FKLT  Q+ A +EI+ND+ S     RL+ GDVG GKT+V   +++  Y    +T  M PT
Sbjct: 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426

Query: 288 SILAKQLYNEALKFLPPY-FEVELLLGGSYKKRSNHLFETITH----VVIGTQALLFDKR 342
           SILA Q Y   ++    +   V LL+G +       +   + +    VVIGT AL+ +  
Sbjct: 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV 486

Query: 343 DLNEFALVITDEQHRFGTKQRYQLEKMASSKGNKPHSLQFSATPIPRTLALAKSAFVKTT 402
                 LVI DEQHRFG KQR  L     +KG    +L  SATPIPR++ALA    +  T
Sbjct: 487 HFKNLGLVIIDEQHRFGVKQREAL----MNKGKMVDTLVMSATPIPRSMALAFYGDLDVT 542

Query: 403 MIREIPYP-KEIETLVLHKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYLSLSEG 461
           +I E+P   KE++T+++       V E + +E+ +  Q  +VYPL+ ES+K+   S  E 
Sbjct: 543 VIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEM 602

Query: 462 ASFWQKRFK---KVYTTSGQ--DKNKEEVIEEFRESG-SILLATTLIEVGISLPRLSVMV 515
             +  K      K+    G+   + K+ V+ EF E    IL++TT+IEVGI +PR +VMV
Sbjct: 603 YEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV 662

Query: 516 ILAPERLGLATLHQLRGRVSRNGLKGYCFLC---TIQEENERLEKFADELDGFKIAELDL 572
           I  PER GLA LHQLRGRV R G + YCFL      +E  ERL  F    DGFKIAE DL
Sbjct: 663 IENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFFTLNTDGFKIAEYDL 722

Query: 573 EYRKSGDLLQGGEQSGNSFEYIDLAKDENIIAEVKRD 609
           + R  G+     +   + F+  DL +D  ++   + D
Sbjct: 723 KTRGPGEFFGVKQHGLSGFKVADLYRDLKLLEWARED 759