>pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
 pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
 pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
 pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
           With The Inhibitor Alpha Amanitin
          Length = 1733

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 23/143 (16%)

Query: 35  GGFNGIYDSYFKEIHVDLPTS--ARILKQITLTYQDIDGSIHSKVVGIDKGIDWHYPLKL 92
           GG  G+ D+  K            + L+ I + Y +   +    V+    G D      +
Sbjct: 819 GGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHI 878

Query: 93  SQHTLDP-----AAFEKRYQIQDFDFLMASNTM---ILRSPYKILRSFVLVNPYRIVLDT 144
            + +LD      AAFEKRY++   D L   +T+   +L S  +IL    L    +++LD 
Sbjct: 879 EKQSLDTIGGSDAAFEKRYRV---DLLNTDHTLDPSLLESGSEILGDLKL----QVLLDE 931

Query: 145 QKGPLDIYQNMDLNQKFFSHIKV 167
           +      Y+ +  ++KF   + V
Sbjct: 932 E------YKQLVKDRKFLREVFV 948