>pdb|1JMJ|A Chain A, Crystal Structure Of Native Heparin Cofactor Ii
 pdb|1JMJ|B Chain B, Crystal Structure Of Native Heparin Cofactor Ii
          Length = 480

 Score = 31.6 bits (70), Expect = 0.17
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 11/124 (8%)

Query: 86  YTLRDANNTLIQALIPISQDLQIHI--YKKGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQ 143
           YTLR  N+  IQ   PI  D +  +  Y   E    DF    F  K    ++ L     +
Sbjct: 197 YTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFISKTNNHIMKLTKGLIK 256

Query: 144 DIIKATNDPLLANQLMNAYKKSVPFK-RLVKNDKIAIVYTRDYRVGQAFGQPTIKMAMVS 202
           D ++   DP     ++N     + FK   V    + + +  ++R+ +   +  +K++M+ 
Sbjct: 257 DALE-NIDPATQMMILNC----IYFKGSWVNKFPVEMTHNHNFRLNE---REVVKVSMMQ 308

Query: 203 SRSN 206
           ++ N
Sbjct: 309 TKGN 312