>pdb|1JT0|A Chain A, Crystal Structure Of A Cooperative Qacr-Dna Complex
 pdb|1JT0|B Chain B, Crystal Structure Of A Cooperative Qacr-Dna Complex
 pdb|1JT0|C Chain C, Crystal Structure Of A Cooperative Qacr-Dna Complex
 pdb|1JTX|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
           Regulator Qacr Bound To Crystal Violet
 pdb|1JTX|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
           Regulator Qacr Bound To Crystal Violet
 pdb|1JTX|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
           Regulator Qacr Bound To Crystal Violet
 pdb|1JTX|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
           Regulator Qacr Bound To Crystal Violet
 pdb|1JUP|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
           Repressor Qacr Bound To Malachite Green
 pdb|1JUP|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
           Repressor Qacr Bound To Malachite Green
 pdb|1JUP|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
           Repressor Qacr Bound To Malachite Green
 pdb|1JUP|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
           Repressor Qacr Bound To Malachite Green
 pdb|1JTY|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
           Regulator Qacr Bound To Ethidium
 pdb|1JTY|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
           Regulator Qacr Bound To Ethidium
 pdb|1JTY|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
           Regulator Qacr Bound To Ethidium
 pdb|1JTY|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
           Regulator Qacr Bound To Ethidium
 pdb|1JUM|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
           Repressor Qacr Bound To The Natural Drug Berberine
 pdb|1JUM|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
           Repressor Qacr Bound To The Natural Drug Berberine
 pdb|1JUM|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
           Repressor Qacr Bound To The Natural Drug Berberine
 pdb|1JUM|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
           Repressor Qacr Bound To The Natural Drug Berberine
 pdb|1JT0|D Chain D, Crystal Structure Of A Cooperative Qacr-Dna Complex
          Length = 194

 Score = 29.6 bits (65), Expect = 0.39
 Identities = 40/170 (23%), Positives = 70/170 (40%), Gaps = 29/170 (17%)

Query: 113 IKMQSSSGENVFSYDLKTEYVLDPNILIETMKRHGFDFVDIRRVSLKEWEYDFSLQEVKL 172
           +K+  SS  N++ Y  KT+  L               F++I  +   +W+  +  +++K 
Sbjct: 29  VKLSESSKGNLY-YHFKTKENL---------------FLEILNIEESKWQEQWKKEQIKA 72

Query: 173 PNARV-------LVLSSE---PVE--FKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFY 220
              R        L L++E   P++    E   +Y+ + + N  +    N  +    +IF 
Sbjct: 73  KTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFK 132

Query: 221 DENLKIIQIIAKENRQQEIALNLLNG-VRFIHITDAKNPIVLKNGISVVF 269
           + NL     I   N   +IA N +NG V F H  +    I L N  S +F
Sbjct: 133 EGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIF 182