>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
            Resolution
 pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
            Resolution
 pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
            Promoter Dna Complex At 6.5 A Resolution
          Length = 1524

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 19/48 (39%), Positives = 25/48 (51%), Gaps = 2/48 (4%)

Query: 69   LSLGATVGIGSIVGVATAISIAGPGAVFWM--WVTGLVGMATKYSEGI 114
            LS+   V IG  VGV  A SI  PG    M  + TG V + T  ++G+
Sbjct: 1209 LSMARPVSIGEAVGVVAAESIGEPGTQLTMRTFHTGGVAVGTDITQGL 1256