BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644643|ref|NP_206812.1| chaperone and heat shock
protein (groEL) [Helicobacter pylori 26695]
(546 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From... 652 0.0
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-... 644 0.0
pdb|1DER|A Chain A, The 2.4 Angstrom Crystal Structure Of T... 640 0.0
pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo... 640 0.0
pdb|1GRL| Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain... 638 0.0
pdb|1OEL|A Chain A, Mol_id: 1; Molecule: Groel (Hsp60 Class... 638 0.0
pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Compris... 256 6e-69
pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substitut... 248 2e-66
pdb|1KID| Groel (Hsp60 Class) Fragment (Apical Domain) Co... 246 6e-66
pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substitut... 246 6e-66
pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class... 202 6e-53
pdb|1JON| Groel (Hsp60 Class) Fragment Comprising Residue... 201 2e-52
pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical... 198 1e-51
pdb|1A6D|B Chain B, Thermosome From T. Acidophilum >gi|4699... 105 1e-23
pdb|1A6D|A Chain A, Thermosome From T. Acidophilum >gi|4699... 104 2e-23
pdb|1HH1|A Chain A, The Structure Of Hjc, A Holliday Juncti... 33 0.082
pdb|1L8W|A Chain A, Crystal Structure Of Lyme Disease Varia... 30 0.53
pdb|1H4U|A Chain A, Domain G2 Of Mouse Nidogen-1 28 2.0
pdb|1GL4|A Chain A, Nidogen-1 G2PERLECAN IG3 COMPLEX 28 2.0
pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Ki... 28 2.6
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 28 2.6
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 28 3.4
pdb|1QEX|A Chain A, Bacteriophage T4 Gene Product 9 (Gp9), ... 27 4.5
pdb|7PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 4.5
pdb|1MTY|G Chain G, Methane Monooxygenase Hydroxylase From ... 27 4.5
pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongati... 27 4.5
pdb|1FZ1|F Chain F, Methane Monooxygenase Hydroxylase, Form... 27 4.5
pdb|5PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 5.8
pdb|4PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 5.8
pdb|1GYM| Phosphatidylinositol-Specific Phospholipase C I... 27 5.8
pdb|1HBN|B Chain B, Methyl-Coenzyme M Reductase >gi|1582679... 27 5.8
pdb|6PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 5.8
pdb|3PTD| Phosphatidylinositol-Specific Phospholipase C M... 27 5.8
pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6 ... 26 10.0
pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl ... 26 10.0
pdb|1SES|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (S... 26 10.0
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 652 bits (1682), Expect = 0.0
Identities = 337/542 (62%), Positives = 430/542 (79%), Gaps = 4/542 (0%)
Query: 2 AKEIKFSDSARNLLFEGVRQLHDAVKVTMGPRGRNVLIQKSYGAPSITKDGVSVAKEIEL 61
AKE+KF+ AR+ + +GV L DAVKVT+GP+GRNV+I KS+GAP ITKDGVSVAKEIEL
Sbjct: 3 AKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIEL 62
Query: 62 SCPVANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGMDK 121
S NMGAQ+V+EVAS+T D AGDGTTTATVLA +I +EGL+ + AG NP+++KRG+D
Sbjct: 63 SDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDV 122
Query: 122 AAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEAKG 181
A ++ +K A++ V E+ QV TISAN + IG+ IA+AM++VG +GVITVEE KG
Sbjct: 123 ATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKG 182
Query: 182 IEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMK 241
+E E++VVEGMQFDRGYLSPYFVTNA+KM A+L++AYILL +KK+SS++ ++PLLE ++
Sbjct: 183 METEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQ 242
Query: 242 EGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVIS 301
KPLLI+AED+EGEAL TLVVNKLRG L IAAVKAPGFGDRRK ML+DIAILTGGQVIS
Sbjct: 243 SQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVIS 302
Query: 302 EELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDK 361
E+LG+ LEN ++ LG+A ++ I+KDNTTIVDG G +++ RV+QI+ QI TTSDYD+
Sbjct: 303 EDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDR 362
Query: 362 EKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRA 421
EKLQER+AKL+GGVAVI+VG +E+E+KE+KDRVDDAL+AT+AAV+EGIV+GGG AL++
Sbjct: 363 EKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQG 422
Query: 422 AQKVH--LNLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEV-EKHEGHFGFNAS 478
A+ + + D+ G II RA++AP+ QIA NAG DG VV +V E + FGFNA
Sbjct: 423 AKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQ 482
Query: 479 NGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKA-APAMPDMGGMG 537
+Y DMFK G+IDP KV R AL++A SV+ LL+TTEA + E E KA A MPDMGGMG
Sbjct: 483 TEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPEPKAPAGGMPDMGGMG 542
Query: 538 GM 539
GM
Sbjct: 543 GM 544
>pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
Length = 547
Score = 644 bits (1661), Expect = 0.0
Identities = 333/547 (60%), Positives = 422/547 (76%), Gaps = 3/547 (0%)
Query: 2 AKEIKFSDSARNLLFEGVRQLHDAVKVTMGPRGRNVLIQKSYGAPSITKDGVSVAKEIEL 61
AK++KF + AR + GV L DAVKVT+GP+GRNV++ KS+GAP+ITKDGVSVA+EIEL
Sbjct: 2 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 62 SCPVANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGMDK 121
NMGAQ+VKEVASK DAAGDGTTTATVLA +I EGL+ + AG NP+++KRG+DK
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 122 AAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEAKG 181
A A + ELK S + I QV TISANSD +GKLIA+AM+KVGK+GVITVE+ G
Sbjct: 122 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 182 IEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMK 241
++DELDVVEGMQFDRGYLSPYF+ E +L++ +ILL DKKIS+++++LP+LE K
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 242 EGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVIS 301
GKPLLIIAED+EGEAL TLVVN +RG++ +AAVKAPGFGDRRK ML+DIA LTGG VIS
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 302 EELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDK 361
EE+G+ LE A +E LG+A R+VI+KD TTI+DG G ++ RVAQI+ QI TSDYD+
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDR 361
Query: 362 EKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRA 421
EKLQER+AKL+GGVAVIKVGAA+EVEMKEKK RV+DAL AT+AAVEEG+V GGG ALIR
Sbjct: 362 EKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRV 421
Query: 422 AQKVH--LNLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVEKHEGHFGFNASN 479
A K+ ++D+ VG ++ +RA++APL QI +N G + VV N V+ +G++G+NA+
Sbjct: 422 ASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAAT 481
Query: 480 GKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAMPDMGGMGGM 539
+Y +M GI+DP KV R ALQ A SV+ L++TTE V ++ + AA + GGMGGM
Sbjct: 482 EEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAAD-LGAAGGMGGM 540
Query: 540 GGMGGMM 546
GGMGGMM
Sbjct: 541 GGMGGMM 547
>pdb|1DER|A Chain A, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|B Chain B, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|C Chain C, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|D Chain D, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|E Chain E, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|F Chain F, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|G Chain G, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|H Chain H, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|I Chain I, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|J Chain J, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|K Chain K, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|L Chain L, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|M Chain M, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
pdb|1DER|N Chain N, The 2.4 Angstrom Crystal Structure Of The Bacterial
Chaperonin Groel Complexed With Atp-Gamma-S
Length = 547
Score = 640 bits (1650), Expect = 0.0
Identities = 331/547 (60%), Positives = 420/547 (76%), Gaps = 3/547 (0%)
Query: 2 AKEIKFSDSARNLLFEGVRQLHDAVKVTMGPRGRNVLIQKSYGAPSITKDGVSVAKEIEL 61
AK++KF + A + GV L DAVKVT+GP+GRNV++ KS+GAP+ITKDGVSVA+EIEL
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 62 SCPVANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGMDK 121
NMGAQ+VKEVASK DAAGDGTTTATVLA +I EGL+ + AG NP+++KRG+DK
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 122 AAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEAKG 181
A + ELK S + I QV TISANSD +GKLIA+AM+KVGK+GVITVE+ G
Sbjct: 122 AVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 182 IEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMK 241
++DELDVVEGMQFDRGYLSPYF+ E +L++ +ILL DKKIS+++++LP+LE K
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 242 EGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVIS 301
GKPLLIIAED+EGEAL TLVVN +RG++ +AAVKAPGFGDRRK ML+DIA LTGG VIS
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 302 EELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDK 361
EE+G+ LE A +E LG+A R+VI+KD TTI+DG G ++ RVAQI+ QI TSDYD+
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDR 361
Query: 362 EKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRA 421
EKLQER+AKL+GGVAVIKVGAA+EVEMKEKK RV+DAL AT+AAVEEG+V GGG ALIR
Sbjct: 362 EKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRV 421
Query: 422 AQKVH--LNLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVEKHEGHFGFNASN 479
A K+ ++D+ VG ++ +RA++APL QI +N G + VV N V+ +G++G+NA+
Sbjct: 422 ASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAAT 481
Query: 480 GKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAMPDMGGMGGM 539
+Y +M GI+DP KV R ALQ A SV+ L++TTE V ++ + AA + GGMGGM
Sbjct: 482 EEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAAD-LGAAGGMGGM 540
Query: 540 GGMGGMM 546
GGMGGMM
Sbjct: 541 GGMGGMM 547
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR6|A Chain A, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|B Chain B, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|C Chain C, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|D Chain D, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|E Chain E, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|F Chain F, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|G Chain G, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|H Chain H, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|I Chain I, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|J Chain J, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|K Chain K, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|L Chain L, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|M Chain M, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
pdb|1GR6|N Chain N, Solution Structure Of Groel(D398a)+ 250um Atp By
Cryo-Electron Microscopy
Length = 547
Score = 640 bits (1650), Expect = 0.0
Identities = 331/547 (60%), Positives = 420/547 (76%), Gaps = 3/547 (0%)
Query: 2 AKEIKFSDSARNLLFEGVRQLHDAVKVTMGPRGRNVLIQKSYGAPSITKDGVSVAKEIEL 61
AK++KF + A + GV L DAVKVT+GP+GRNV++ KS+GAP+ITKDGVSVA+EIEL
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 62 SCPVANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGMDK 121
NMGAQ+VKEVASK DAAGDGTTTATVLA +I EGL+ + AG NP+++KRG+DK
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 122 AAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEAKG 181
A + ELK S + I QV TISANSD +GKLIA+AM+KVGK+GVITVE+ G
Sbjct: 122 AVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 182 IEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMK 241
++DELDVVEGMQFDRGYLSPYF+ E +L++ +ILL DKKIS+++++LP+LE K
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 242 EGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVIS 301
GKPLLIIAED+EGEAL TLVVN +RG++ +AAVKAPGFGDRRK ML+DIA LTGG VIS
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 302 EELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDK 361
EE+G+ LE A +E LG+A R+VI+KD TTI+DG G ++ RVAQI+ QI TSDYD+
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDR 361
Query: 362 EKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRA 421
EKLQER+AKL+GGVAVIKVGAA+EVEMKEKK RV+DAL AT+AAVEEG+V GGG ALIR
Sbjct: 362 EKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRV 421
Query: 422 AQKVH--LNLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVEKHEGHFGFNASN 479
A K+ ++D+ VG ++ +RA++APL QI +N G + VV N V+ +G++G+NA+
Sbjct: 422 ASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAAT 481
Query: 480 GKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAMPDMGGMGGM 539
+Y +M GI+DP KV R ALQ A SV+ L++TTE V ++ + AA + GGMGGM
Sbjct: 482 EEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAAD-LGAAGGMGGM 540
Query: 540 GGMGGMM 546
GGMGGMM
Sbjct: 541 GGMGGMM 547
>pdb|1GRL| Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: Null; Engineered:
Yes; Mutation: R13g, A126v
Length = 548
Score = 638 bits (1645), Expect = 0.0
Identities = 330/547 (60%), Positives = 419/547 (76%), Gaps = 3/547 (0%)
Query: 2 AKEIKFSDSARNLLFEGVRQLHDAVKVTMGPRGRNVLIQKSYGAPSITKDGVSVAKEIEL 61
AK++KF + A + GV L DAVKVT+GP+GRNV++ KS+GAP+ITKDGVSVA+EIEL
Sbjct: 3 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 62
Query: 62 SCPVANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGMDK 121
NMGAQ+VKEVASK DAAGDGTTTATVLA +I EGL+ + AG NP+++KRG+DK
Sbjct: 63 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 122
Query: 122 AAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEAKG 181
A + ELK S + I QV TISANSD +GKLIA+AM+KVGK+GVITVE+ G
Sbjct: 123 AVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 182
Query: 182 IEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMK 241
++DELDVVEGMQFDRGYLSPYF+ E +L++ +ILL DKKIS+++++LP+LE K
Sbjct: 183 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 242
Query: 242 EGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVIS 301
GKPLLIIAED+EGEAL T VVN +RG++ +AAVKAPGFGDRRK ML+DIA LTGG VIS
Sbjct: 243 AGKPLLIIAEDVEGEALATAVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 302
Query: 302 EELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDK 361
EE+G+ LE A +E LG+A R+VI+KD TTI+DG G ++ RVAQI+ QI TSDYD+
Sbjct: 303 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDR 362
Query: 362 EKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRA 421
EKLQER+AKL+GGVAVIKVGAA+EVEMKEKK RV+DAL AT+AAVEEG+V GGG ALIR
Sbjct: 363 EKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRV 422
Query: 422 AQKVH--LNLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVEKHEGHFGFNASN 479
A K+ ++D+ VG ++ +RA++APL QI +N G + VV N V+ +G++G+NA+
Sbjct: 423 ASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAAT 482
Query: 480 GKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAMPDMGGMGGM 539
+Y +M GI+DP KV R ALQ A SV+ L++TTE V ++ + AA + GGMGGM
Sbjct: 483 EEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAAD-LGAAGGMGGM 541
Query: 540 GGMGGMM 546
GGMGGMM
Sbjct: 542 GGMGGMM 548
>pdb|1OEL|A Chain A, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|B Chain B, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|C Chain C, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|D Chain D, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|E Chain E, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|F Chain F, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
pdb|1OEL|G Chain G, Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: A, B, C,
D, E, F, G; Engineered: Yes; Mutation: R13g, A126v
Length = 547
Score = 638 bits (1645), Expect = 0.0
Identities = 330/547 (60%), Positives = 419/547 (76%), Gaps = 3/547 (0%)
Query: 2 AKEIKFSDSARNLLFEGVRQLHDAVKVTMGPRGRNVLIQKSYGAPSITKDGVSVAKEIEL 61
AK++KF + A + GV L DAVKVT+GP+GRNV++ KS+GAP+ITKDGVSVA+EIEL
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 62 SCPVANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGMDK 121
NMGAQ+VKEVASK DAAGDGTTTATVLA +I EGL+ + AG NP+++KRG+DK
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 122 AAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEAKG 181
A + ELK S + I QV TISANSD +GKLIA+AM+KVGK+GVITVE+ G
Sbjct: 122 AVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 182 IEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMK 241
++DELDVVEGMQFDRGYLSPYF+ E +L++ +ILL DKKIS+++++LP+LE K
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 242 EGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVIS 301
GKPLLIIAED+EGEAL T VVN +RG++ +AAVKAPGFGDRRK ML+DIA LTGG VIS
Sbjct: 242 AGKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 302 EELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDK 361
EE+G+ LE A +E LG+A R+VI+KD TTI+DG G ++ RVAQI+ QI TSDYD+
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDR 361
Query: 362 EKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIRA 421
EKLQER+AKL+GGVAVIKVGAA+EVEMKEKK RV+DAL AT+AAVEEG+V GGG ALIR
Sbjct: 362 EKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRV 421
Query: 422 AQKVH--LNLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVEKHEGHFGFNASN 479
A K+ ++D+ VG ++ +RA++APL QI +N G + VV N V+ +G++G+NA+
Sbjct: 422 ASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAAT 481
Query: 480 GKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAMPDMGGMGGM 539
+Y +M GI+DP KV R ALQ A SV+ L++TTE V ++ + AA + GGMGGM
Sbjct: 482 EEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAAD-LGAAGGMGGM 540
Query: 540 GGMGGMM 546
GGMGGMM
Sbjct: 541 GGMGGMM 547
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues
188-379
Length = 192
Score = 256 bits (653), Expect = 6e-69
Identities = 127/192 (66%), Positives = 157/192 (81%)
Query: 187 DVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPL 246
DVVEGMQFDRGYLSPYF+ E +L++ +ILL DKKIS+++++LP+LE K GKPL
Sbjct: 1 DVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPL 60
Query: 247 LIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGL 306
LIIAED+EGEAL TLVVN +RG++ +AAVKAPGFGDRRK ML+DIA LTGG VISEE+G+
Sbjct: 61 LIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGM 120
Query: 307 SLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQE 366
LE A +E LG+A R+VI+KD TTI+DG G ++ RVAQI+ QI TSDYD+EKLQE
Sbjct: 121 ELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQE 180
Query: 367 RLAKLSGGVAVI 378
R+AKL+GGVAVI
Sbjct: 181 RVAKLAGGVAVI 192
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 248 bits (632), Expect = 2e-66
Identities = 123/186 (66%), Positives = 151/186 (81%)
Query: 190 EGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLII 249
EGMQFDRGYLSPYF+ E +L++ +ILLTDKKIS+++++LP+LE K GKPLLII
Sbjct: 8 EGMQFDRGYLSPYFINKPETGEVELESPFILLTDKKISNIRELLPVLEAVAKAGKPLLII 67
Query: 250 AEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLE 309
AED+EGEAL TLVVN +RG++ +AAVKAPGFGDRRK ML+DIA LTGG VISEELG+ LE
Sbjct: 68 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEELGMKLE 127
Query: 310 NAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLA 369
A +E LG+A R+VI KD TTI+DG G ++ RVAQI+ QI TSDYD+EKLQER+A
Sbjct: 128 KATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVA 187
Query: 370 KLSGGV 375
KL+GGV
Sbjct: 188 KLAGGV 193
>pdb|1KID| Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues
191-376, Mutant With Ala 262 Replaced With Leu And Ile
267 Replaced With Met
Length = 203
Score = 246 bits (627), Expect = 6e-66
Identities = 121/186 (65%), Positives = 151/186 (81%)
Query: 190 EGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLII 249
EGMQFDRGYLSPYF+ E +L++ +ILL DKKIS+++++LP+LE K GKPLLII
Sbjct: 18 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII 77
Query: 250 AEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLE 309
AED+EGEAL TLVVN +RG++ +AAVKAPGFGDRRK ML+DIA LTGG VISEE+G+ LE
Sbjct: 78 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELE 137
Query: 310 NAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLA 369
A +E LG+A R+VI+KD TTI+DG G ++ RVAQI+ QI TSDYD+EKLQER+A
Sbjct: 138 KATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVA 197
Query: 370 KLSGGV 375
KL+GGV
Sbjct: 198 KLAGGV 203
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 246 bits (627), Expect = 6e-66
Identities = 122/186 (65%), Positives = 150/186 (80%)
Query: 190 EGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLII 249
EGMQFDRGYLSPYF+ E +L++ +ILL DKKIS+++++LP+LE K GKPLLII
Sbjct: 8 EGMQFDRGYLSPYFINKPETGEVELESPFILLVDKKISNIRELLPVLEAVAKAGKPLLII 67
Query: 250 AEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLE 309
AED+EGEAL TLVVN +RG++ +AAVKAPGFGDRRK ML+DIA LTGG VISEELG+ LE
Sbjct: 68 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEELGMKLE 127
Query: 310 NAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLA 369
A +E LG+A R+VI KD TTI+DG G ++ RVAQI+ QI TSDYD+EKLQER+A
Sbjct: 128 KATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVA 187
Query: 370 KLSGGV 375
KL+GGV
Sbjct: 188 KLAGGV 193
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical
Domain) Comprising Residues 192-336
Length = 145
Score = 202 bits (515), Expect = 6e-53
Identities = 99/145 (68%), Positives = 122/145 (83%)
Query: 191 GMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIA 250
G QFD+GY+SPYFVTN E M A L++A+IL+ +KK+S+++++LP+LE+ + GKPLLIIA
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 251 EDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLEN 310
ED+EGEAL TLVVNKLRG L++AAVKAPGFGDRRKEMLKDIA +TGG VISEELG LEN
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120
Query: 311 AEVEFLGKAGRIVIDKDNTTIVDGK 335
A + LG+A R+ I KD TTIV GK
Sbjct: 121 ATLSMLGRAERVRITKDETTIVGGK 145
>pdb|1JON| Groel (Hsp60 Class) Fragment Comprising Residues 191 - 345
Length = 155
Score = 201 bits (511), Expect = 2e-52
Identities = 98/155 (63%), Positives = 124/155 (79%)
Query: 190 EGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLII 249
EGMQFDRGYLSPYF+ E +L++ +ILL DKKIS+++++LP+LE K GKPLLII
Sbjct: 1 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII 60
Query: 250 AEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLE 309
AED+EGEAL TLVVN +RG++ +AAVKAPGFGDRRK ML+DIA LTGG VISEE+G+ LE
Sbjct: 61 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELE 120
Query: 310 NAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDR 344
A +E LG+A R+VI+KD TTI+DG G ++ R
Sbjct: 121 KATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 155
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DKD|D Chain D, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DK7|B Chain B, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DKD|B Chain B, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|C Chain C, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|A Chain A, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
Length = 146
Score = 198 bits (503), Expect = 1e-51
Identities = 96/145 (66%), Positives = 120/145 (82%)
Query: 190 EGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLII 249
EGMQFDRGYLSPYF+ E +L++ +ILL DKKIS+++++LP+LE K GKPLLII
Sbjct: 1 EGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII 60
Query: 250 AEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLE 309
AED+EGEAL TLVVN +RG++ +AAVKAPGFGDRRK ML+DIA LTGG VISEE+G+ LE
Sbjct: 61 AEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELE 120
Query: 310 NAEVEFLGKAGRIVIDKDNTTIVDG 334
A +E LG+A R+VI+KD TTI+DG
Sbjct: 121 KATLEDLGQAKRVVINKDTTTIIDG 145
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome - Mg-Adp-Alf3 Complex
Length = 543
Score = 105 bits (263), Expect = 1e-23
Identities = 120/531 (22%), Positives = 229/531 (42%), Gaps = 67/531 (12%)
Query: 17 EGVRQLHDAVKVTMGPRGRNVLIQKSYGAPSITKDGVSVAKEIELSCPVANMGAQLVKEV 76
E + ++V+ ++GPRG + ++ S G IT DGV++ KE+++ P A M ++
Sbjct: 28 EAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEV---- 83
Query: 77 ASKTADA-AGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGMDKAAEAIINELKKASK 135
SKT D+ GDGTTTA ++A + ++ I +P + G A+E + + S
Sbjct: 84 -SKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEIST 142
Query: 136 KVGGKEE--ITQVATISANS------DHNIGKLIADAMEKVGK----------DGVITVE 177
K+G E+ + ++A S NS + ++ +A++ V + D + V+
Sbjct: 143 KIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVK 202
Query: 178 EAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLE 237
+ G D+ ++ G+ D+ + P M + +A I L D + K P +
Sbjct: 203 KQGGAIDDTQLINGIIVDKEKVHP-------GMPDVVKDAKIALLDAPLEIKK---PEFD 252
Query: 238 KTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGG 297
++ P +I + E + +V+K++ V + G D + L I
Sbjct: 253 TNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVR 312
Query: 298 QVISEELGLSLENAEVEFLGKA-GRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTT 356
+V + ++++ L KA G ++ +TI + +RV Q+K
Sbjct: 313 RV---------KKSDMDKLAKATGASIV----STIDEISSSDLGTAERVEQVKV------ 353
Query: 357 SDYDKEKLQERLAKLSGGVAV-IKVGAASEVEMKEKKDRVDDALSATKAAVEEG-IVIGG 414
E + AV I V +E + E + + D+L +A+E+G GG
Sbjct: 354 ----GEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGG 409
Query: 415 GAALIRAAQKVH---LNLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVV----NEVE 467
GA A ++ + +++ E AI+ +A NAG D ++ E
Sbjct: 410 GATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHA 469
Query: 468 KHEGHFGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATV 518
K +G N G+ DM K G+I+P++V + A+++A + ++L + +
Sbjct: 470 KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 520
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome - Mg-Adp-Alf3 Complex
Length = 545
Score = 104 bits (260), Expect = 2e-23
Identities = 133/580 (22%), Positives = 235/580 (39%), Gaps = 117/580 (20%)
Query: 17 EGVRQLHDAVKVTMGPRGRNVLIQKSYGAPSITKDGVSVAKEIELSCPVANMGAQLVKEV 76
E + + DAV+ T+GP+G + ++ S G I+ DG ++ KE+++ P A M + EV
Sbjct: 29 EAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKM----IVEV 84
Query: 77 ASKTADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGMDKA---AEAIINELKKA 133
+ A GDGTTTA VL+ + K+ + G +P + G A A II+E+ +
Sbjct: 85 SKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK 144
Query: 134 SKKVGGKEEITQVATISAN---SDHNIGKLIADAMEKVG--KDGVITVEEAK-------- 180
S +I A N S+ + L+ A+ V +DG V+ A
Sbjct: 145 STDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNG 204
Query: 181 GIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKI-------------- 226
G ++ + G+ D+ + KM + NA I L D +
Sbjct: 205 GSVNDTQFISGIVIDKEKVH-------SKMPDVVKNAKIALIDSALEIKKTEIEAKVQIS 257
Query: 227 --SSMKDIL--------PLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVK 276
S ++D L ++EK K G +++ + I+ A L + V +
Sbjct: 258 DPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRV---- 313
Query: 277 APGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRI---VIDKDNTTIVD 333
+K ++ +A TG +++++ L++ LG+A + I D T V
Sbjct: 314 -------KKSDMEKLAKATGAKIVTD-----LDDLTPSVLGEAETVEERKIGDDRMTFVM 361
Query: 334 GKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKD 393
G K V+++ G V + E +
Sbjct: 362 G----------------------------------CKNPKAVSILIRGGTDHV-VSEVER 386
Query: 394 RVDDALSATKAAVEEGIVIGGGAA----LIRAAQKVHLNLHDDEKVGYEIIMRAIKAPLA 449
++DA+ E+G + GG A L K ++ E++ E +A++
Sbjct: 387 ALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPR 446
Query: 450 QIAINAGYD--GGVVVNEVEKHEGHF--GFNASNGKYVDMFKEGIIDPLKVERIALQNAV 505
+A NAG D ++ + + +G G + N DM +G++DPL+V+ AL++AV
Sbjct: 447 TLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAV 506
Query: 506 SVSSLLLTTEATVHEIKEEKAAPAMPDMGGMGGMGGMGGM 545
V++++L + I +K+ P G GM G GGM
Sbjct: 507 EVATMILRIDDV---IASKKSTPPSGQGGQGQGMPG-GGM 542
>pdb|1HH1|A Chain A, The Structure Of Hjc, A Holliday Junction Resolving Enzyme
From Sulfolobus Solfataricus
Length = 143
Score = 33.1 bits (74), Expect = 0.082
Identities = 19/55 (34%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
Query: 250 AEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEEL 304
A+ +G A+ +V++LR A V+AP G +RK+ + DI L G +I E+
Sbjct: 3 AKKRKGSAVERNIVSRLRDK-GFAVVRAPASGSKRKDPIPDIIALKNGVIILIEM 56
>pdb|1L8W|A Chain A, Crystal Structure Of Lyme Disease Variable Surface Antigen
Vlse Of Borrelia Burgdorferi
pdb|1L8W|B Chain B, Crystal Structure Of Lyme Disease Variable Surface Antigen
Vlse Of Borrelia Burgdorferi
pdb|1L8W|C Chain C, Crystal Structure Of Lyme Disease Variable Surface Antigen
Vlse Of Borrelia Burgdorferi
pdb|1L8W|D Chain D, Crystal Structure Of Lyme Disease Variable Surface Antigen
Vlse Of Borrelia Burgdorferi
Length = 348
Score = 30.4 bits (67), Expect = 0.53
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 39 IQKSYGAPSITKD-GVSVAKEIELSCPVANMGAQLVKEVASKTADAAGDGTTTATVLAYS 97
I + G P T G +V I+ V+ + +LVK V KTA+ A GT
Sbjct: 90 ISSTTGKPDSTGSVGTAVEGAIK---EVSELLDKLVKAV--KTAEGASSGTAA------- 137
Query: 98 IFKEGLRNITAGANPIEVKRGMDKAA-EAIINELKKASKKVGGKEEITQVATISANSDHN 156
+ + A A+ +V DKA+ + I +K+ + GG E++ VA ++
Sbjct: 138 -----IGEVVADADAAKVA---DKASVKGIAKGIKEIVEAAGGSEKLKAVAAAKGENNKG 189
Query: 157 IGKLIADA 164
GKL A
Sbjct: 190 AGKLFGKA 197
>pdb|1H4U|A Chain A, Domain G2 Of Mouse Nidogen-1
Length = 265
Score = 28.5 bits (62), Expect = 2.0
Identities = 31/113 (27%), Positives = 52/113 (45%), Gaps = 21/113 (18%)
Query: 240 MKEGKPLLIIAEDIEGEALTTLVVNKLRGVLN-IAAVKAPGFGDRRKEMLKDIAILTGGQ 298
M G+ I+ E + L + + G++ + AV+ GF K+ +TGG+
Sbjct: 68 MNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGF--------KNGFSITGGE 119
Query: 299 VISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGH---SHDVKDRVAQI 348
+ AEV FLG G++V+ K + +D GH S +++ RV QI
Sbjct: 120 FTRQ--------AEVTFLGHPGKLVL-KQQFSGIDEHGHLTISTELEGRVPQI 163
>pdb|1GL4|A Chain A, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 285
Score = 28.5 bits (62), Expect = 2.0
Identities = 31/113 (27%), Positives = 52/113 (45%), Gaps = 21/113 (18%)
Query: 240 MKEGKPLLIIAEDIEGEALTTLVVNKLRGVLN-IAAVKAPGFGDRRKEMLKDIAILTGGQ 298
M G+ I+ E + L + + G++ + AV+ GF K+ +TGG+
Sbjct: 82 MNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGF--------KNGFSITGGE 133
Query: 299 VISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGH---SHDVKDRVAQI 348
+ AEV FLG G++V+ K + +D GH S +++ RV QI
Sbjct: 134 FTRQ--------AEVTFLGHPGKLVL-KQQFSGIDEHGHLTISTELEGRVPQI 177
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 28.1 bits (61), Expect = 2.6
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 1/128 (0%)
Query: 31 GPRGRNVLIQKSYGAPSITKDGVSVAKEIE-LSCPVANMGAQLVKEVASKTADAAGDGTT 89
GP R + A +I +G E E + + ++VK A+ G G T
Sbjct: 244 GPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDT 303
Query: 90 TATVLAYSIFKEGLRNITAGANPIEVKRGMDKAAEAIINELKKASKKVGGKEEITQVATI 149
Y + + T G +E+ G + A ++E K S K+ ++ + +
Sbjct: 304 ATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEKKSLSSKLSVQDLDLKDKRV 363
Query: 150 SANSDHNI 157
D N+
Sbjct: 364 FIRVDFNV 371
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 28.1 bits (61), Expect = 2.6
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 335 KGHSHDVKDRVAQIKTQIASTTSDYDK--EKLQERLAKLSGGVAVIKVGAASEVEMKEKK 392
+G S D+ +++A+++ QIA + K E+LQ LA+L + E++
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI 1125
Query: 393 DRVDDALSATKAA 405
+ + L + KAA
Sbjct: 1126 SDLQEDLESEKAA 1138
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 27.7 bits (60), Expect = 3.4
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 94 LAYSIFKEGLRNITAGANPI----EVKRGMDKAAEAIINELKKASKKV 137
LAY + KE L N+ + NPI V G +A NE KK +V
Sbjct: 21 LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRV 68
Score = 27.7 bits (60), Expect = 3.4
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 332 VDGKGHSHDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEK 391
+D K +K+++ + ++ DY E + + ++ G + +IK+ +E KE+
Sbjct: 166 LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTKN-VREIEGKIKLIKLKGFEGLERKER 224
Query: 392 KDR 394
K+R
Sbjct: 225 KER 227
>pdb|1QEX|A Chain A, Bacteriophage T4 Gene Product 9 (Gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector
pdb|1QEX|B Chain B, Bacteriophage T4 Gene Product 9 (Gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector
Length = 288
Score = 27.3 bits (59), Expect = 4.5
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 20/158 (12%)
Query: 136 KVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEAKGIEDELDVVEGMQFD 195
KVG + +I +T+ G+L D +E + +G I+V I+ +D ++G+ +
Sbjct: 80 KVGTRHDI-DTSTVGVKVIIERGEL-GDCVEFINSNGSISVTNPLTIQ-AIDSIKGVSGN 136
Query: 196 RGYLSPYFVT----------------NAEKMTAQLDNAYILLTDKKISSMKDILPLLEKT 239
SPY + E M Q ++ + S DI PL +T
Sbjct: 137 LVVTSPYSKVTLRCISSDNSTSVWNYSIESMFGQKESPAEGTWNISTSGSVDI-PLFHRT 195
Query: 240 MKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKA 277
LL+ + ++G + T +N L +N + +
Sbjct: 196 EYNMAKLLVTCQSVDGRKIKTAEINILVDTVNSEVISS 233
>pdb|7PTD| Phosphatidylinositol-Specific Phospholipase C Mutant R163k
Length = 298
Score = 27.3 bits (59), Expect = 4.5
Identities = 34/131 (25%), Positives = 54/131 (40%), Gaps = 13/131 (9%)
Query: 120 DKAAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEA 179
D +E II LKK + + G E+ S +S + K +G I + +A
Sbjct: 104 DNPSETIIMSLKKEYEDMKGAED-------SFSSTFEKKYFVDPIFLKT--EGNIKLGDA 154
Query: 180 KGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDK-KIS---SMKDILPL 235
+G L G GY + Y+ N T NA + + DK K+S +K I
Sbjct: 155 RGKIVLLKKYSGSNEPGGYNNFYWPDNETFTTTVNQNANVTVQDKYKVSYDEKVKSIKDT 214
Query: 236 LEKTMKEGKPL 246
+++TM + L
Sbjct: 215 MDETMNNSEDL 225
>pdb|1MTY|G Chain G, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
pdb|1MTY|H Chain H, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
pdb|1MMO|G Chain G, Methane Monooxygenase Hydrolase (E.C.1.14.13.25) (Methane
Hydroxylase)
pdb|1MMO|H Chain H, Methane Monooxygenase Hydrolase (E.C.1.14.13.25) (Methane
Hydroxylase)
Length = 162
Score = 27.3 bits (59), Expect = 4.5
Identities = 23/67 (34%), Positives = 33/67 (48%), Gaps = 6/67 (8%)
Query: 369 AKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIR-AAQKVHL 427
AKL VAV+K A +EV+ + K +DA S V +G V AA + A+K+H+
Sbjct: 55 AKLEEKVAVLKARAFNEVDFRHKTAFGEDAKS-----VLDGTVAKMNAAKDKWEAEKIHI 109
Query: 428 NLHDDEK 434
K
Sbjct: 110 GFRQAYK 116
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-Eef1ba
Complex
Length = 458
Score = 27.3 bits (59), Expect = 4.5
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 81 ADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGMDKAAEAIINELKKASKKVGGK 140
A + DG T L F G+R + N ++ + + + I+ E KKVG
Sbjct: 125 AGISKDGQTREHALL--AFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYN 182
Query: 141 EEITQVATISANSDHNIGKLIADA-----MEKVGKDGVITVEEAKGIEDELDVVE 190
+ IS + N+ + +A EK K GV+ + K + + +D +E
Sbjct: 183 PKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVV---KGKTLLEAIDAIE 234
>pdb|1FZ1|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ3|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ0|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ8|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FYZ|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FZ9|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZ4|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ7|F Chain F, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FZ0|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ8|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ2|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FYZ|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FZ9|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZH|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZ2|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ5|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ7|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FZ1|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ3|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ6|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ6|F Chain F, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ4|E Chain E, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ5|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZH|E Chain E, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZI|E Chain E, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1FZI|F Chain F, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
Length = 170
Score = 27.3 bits (59), Expect = 4.5
Identities = 23/67 (34%), Positives = 33/67 (48%), Gaps = 6/67 (8%)
Query: 369 AKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIR-AAQKVHL 427
AKL VAV+K A +EV+ + K +DA S V +G V AA + A+K+H+
Sbjct: 58 AKLEEKVAVLKARAFNEVDFRHKTAFGEDAKS-----VLDGTVAKMNAAKDKWEAEKIHI 112
Query: 428 NLHDDEK 434
K
Sbjct: 113 GFRQAYK 119
>pdb|5PTD| Phosphatidylinositol-Specific Phospholipase C Mutant H32a
Length = 298
Score = 26.9 bits (58), Expect = 5.8
Identities = 34/131 (25%), Positives = 54/131 (40%), Gaps = 13/131 (9%)
Query: 120 DKAAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEA 179
D +E II LKK + + G E+ S +S + K +G I + +A
Sbjct: 104 DNPSETIIMSLKKEYEDMKGAED-------SFSSTFEKKYFVDPIFLKT--EGNIKLGDA 154
Query: 180 KGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDK-KIS---SMKDILPL 235
+G L G GY + Y+ N T NA + + DK K+S +K I
Sbjct: 155 RGKIVLLKRYSGSNEPGGYNNFYWPDNETFTTTVNQNANVTVQDKYKVSYDEKVKSIKDT 214
Query: 236 LEKTMKEGKPL 246
+++TM + L
Sbjct: 215 MDETMNNSEDL 225
>pdb|4PTD| Phosphatidylinositol-Specific Phospholipase C Mutant D274n
Length = 298
Score = 26.9 bits (58), Expect = 5.8
Identities = 34/131 (25%), Positives = 54/131 (40%), Gaps = 13/131 (9%)
Query: 120 DKAAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEA 179
D +E II LKK + + G E+ S +S + K +G I + +A
Sbjct: 104 DNPSETIIMSLKKEYEDMKGAED-------SFSSTFEKKYFVDPIFLKT--EGNIKLGDA 154
Query: 180 KGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDK-KIS---SMKDILPL 235
+G L G GY + Y+ N T NA + + DK K+S +K I
Sbjct: 155 RGKIVLLKRYSGSNEPGGYNNFYWPDNETFTTTVNQNANVTVQDKYKVSYDEKVKSIKDT 214
Query: 236 LEKTMKEGKPL 246
+++TM + L
Sbjct: 215 MDETMNNSEDL 225
>pdb|1GYM| Phosphatidylinositol-Specific Phospholipase C In Complex With
Glucosamine-(Alpha-1-6)-Myo-Inositol
pdb|1PTG| Phosphatidylinositol-Specific Phospholipase C In Complex With
Myo-Inositol
pdb|1PTD| Phosphatidylinositol-Specific Phospholipase C
Length = 298
Score = 26.9 bits (58), Expect = 5.8
Identities = 34/131 (25%), Positives = 54/131 (40%), Gaps = 13/131 (9%)
Query: 120 DKAAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEA 179
D +E II LKK + + G E+ S +S + K +G I + +A
Sbjct: 104 DNPSETIIMSLKKEYEDMKGAED-------SFSSTFEKKYFVDPIFLKT--EGNIKLGDA 154
Query: 180 KGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDK-KIS---SMKDILPL 235
+G L G GY + Y+ N T NA + + DK K+S +K I
Sbjct: 155 RGKIVLLKRYSGSNEPGGYNNFYWPDNETFTTTVNQNANVTVQDKYKVSYDEKVKSIKDT 214
Query: 236 LEKTMKEGKPL 246
+++TM + L
Sbjct: 215 MDETMNNSEDL 225
>pdb|1HBN|B Chain B, Methyl-Coenzyme M Reductase
pdb|1HBN|E Chain E, Methyl-Coenzyme M Reductase
pdb|1MRO|B Chain B, Methyl-Coenzyme M Reductase
pdb|1MRO|E Chain E, Methyl-Coenzyme M Reductase
pdb|1HBO|B Chain B, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBO|E Chain E, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBM|B Chain B, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBM|E Chain E, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBU|B Chain B, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|1HBU|E Chain E, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
Length = 442
Score = 26.9 bits (58), Expect = 5.8
Identities = 13/31 (41%), Positives = 21/31 (66%), Gaps = 1/31 (3%)
Query: 149 ISANS-DHNIGKLIADAMEKVGKDGVITVEE 178
+ AN + +G +IAD +E+ +DGVI VE+
Sbjct: 255 VKANGKEGTVGSVIADLVERALEDGVIKVEK 285
>pdb|6PTD| Phosphatidylinositol-Specific Phospholipase C Mutant H32l
Length = 298
Score = 26.9 bits (58), Expect = 5.8
Identities = 34/131 (25%), Positives = 54/131 (40%), Gaps = 13/131 (9%)
Query: 120 DKAAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEA 179
D +E II LKK + + G E+ S +S + K +G I + +A
Sbjct: 104 DNPSETIIMSLKKEYEDMKGAED-------SFSSTFEKKYFVDPIFLKT--EGNIKLGDA 154
Query: 180 KGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDK-KIS---SMKDILPL 235
+G L G GY + Y+ N T NA + + DK K+S +K I
Sbjct: 155 RGKIVLLKRYSGSNEPGGYNNFYWPDNETFTTTVNQNANVTVQDKYKVSYDEKVKSIKDT 214
Query: 236 LEKTMKEGKPL 246
+++TM + L
Sbjct: 215 MDETMNNSEDL 225
>pdb|3PTD| Phosphatidylinositol-Specific Phospholipase C Mutant D274s
Length = 298
Score = 26.9 bits (58), Expect = 5.8
Identities = 34/131 (25%), Positives = 54/131 (40%), Gaps = 13/131 (9%)
Query: 120 DKAAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEA 179
D +E II LKK + + G E+ S +S + K +G I + +A
Sbjct: 104 DNPSETIIMSLKKEYEDMKGAED-------SFSSTFEKKYFVDPIFLKT--EGNIKLGDA 154
Query: 180 KGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDK-KIS---SMKDILPL 235
+G L G GY + Y+ N T NA + + DK K+S +K I
Sbjct: 155 RGKIVLLKRYSGSNEPGGYNNFYWPDNETFTTTVNQNANVTVQDKYKVSYDEKVKSIKDT 214
Query: 236 LEKTMKEGKPL 246
+++TM + L
Sbjct: 215 MDETMNNSEDL 225
>pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6
pdb|1G61|B Chain B, Crystal Structure Of M.Jannaschii Eif6
Length = 228
Score = 26.2 bits (56), Expect = 10.0
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 343 DRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSAT 402
+ + +IK + D + E ++ + L + GA E+K+ K ++D+L+
Sbjct: 79 EELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPELKDFKKDIEDSLNVE 138
Query: 403 K--AAVEEGIVIGGGAALIRAAQKVHLNLHDDE 433
+ E +G A + H + DDE
Sbjct: 139 VEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDE 171
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 26.2 bits (56), Expect = 10.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 141 EEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEAKGIEDELDV 188
E +T++ D KL A E +G D + VE +EDE D+
Sbjct: 5 ERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDM 52
>pdb|1SES|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
Complexed With Seryl-Hydroxamate-Amp
pdb|1SES|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
Complexed With Seryl-Hydroxamate-Amp
pdb|1SET|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
Complexed With 5'-O-[n-(L-Seryl)-Sulphamoyl]adenosine
pdb|1SET|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
Complexed With 5'-O-[n-(L-Seryl)-Sulphamoyl]adenosine
pdb|1SRY|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11)
pdb|1SRY|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11)
pdb|1SER|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) Complexed With
Trna-Ser 2 (Gga Anticodon)
pdb|1SER|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) Complexed With
Trna-Ser 2 (Gga Anticodon)
Length = 421
Score = 26.2 bits (56), Expect = 10.0
Identities = 17/78 (21%), Positives = 36/78 (45%)
Query: 340 DVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDAL 399
++K R+ +++T+ K +E+ A ++ G A+ + E ++EK+ R++ L
Sbjct: 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98
Query: 400 SATKAAVEEGIVIGGGAA 417
G +GG A
Sbjct: 99 LQVPLPPWPGAPVGGEEA 116
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.133 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,991,939
Number of Sequences: 13198
Number of extensions: 124585
Number of successful extensions: 364
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 39
length of query: 546
length of database: 2,899,336
effective HSP length: 93
effective length of query: 453
effective length of database: 1,671,922
effective search space: 757380666
effective search space used: 757380666
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)