BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644732|ref|NP_206902.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(259 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1H7Q|A Chain A, Dtdp-Manganese Complex Of Spsa From Bac... 47 3e-06
pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey D... 29 0.47
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crysta... 28 0.81
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crysta... 28 0.81
pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crysta... 28 0.81
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Del... 28 1.1
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2... 28 1.1
pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidru... 27 1.8
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Del... 27 3.1
pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck >gi|2... 27 3.1
pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1... 26 5.2
pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee... 25 6.9
pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Confor... 25 8.9
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Acti... 25 8.9
pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:... 25 8.9
pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near ... 25 8.9
>pdb|1H7Q|A Chain A, Dtdp-Manganese Complex Of Spsa From Bacillus Subtilis
pdb|1H7L|A Chain A, Dtdp-Magnesium Complex Of Spsa From Bacillus Subtilis
pdb|1QGQ|A Chain A, Udp-Manganese Complex Of Spsa From Bacillus Subtilis
pdb|1QG8|A Chain A, Native (Magnesium-Containing) Spsa From Bacillus Subtilis
pdb|1QGS|A Chain A, Udp-Magnesium Complex Of Spsa From Bacillus Subtilis
Length = 255
Score = 46.6 bits (109), Expect = 3e-06
Identities = 31/114 (27%), Positives = 57/114 (49%), Gaps = 11/114 (9%)
Query: 3 KVSVITACFNSEKTIEDTILSVLHQTYKNIEYIIIDGASTDSTLEIIQK---------HR 53
KVSVI +N + +I S+L QT+ + E I+D S + TL +I+ ++
Sbjct: 2 KVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQ 61
Query: 54 DKIACVMSEKDEGIYDAM-NKGIKRSSGDIIALLNSDDFYKDEFVVEKVVHEFE 106
I+ V ++ Y A+ N+ I+ + G+ I D+ Y + ++ K+V E +
Sbjct: 62 SDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLL-KMVRELD 114
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 29.3 bits (64), Expect = 0.47
Identities = 17/56 (30%), Positives = 27/56 (47%)
Query: 44 STLEIIQKHRDKIACVMSEKDEGIYDAMNKGIKRSSGDIIALLNSDDFYKDEFVVE 99
S LE I + K VM++ DE I A+ + +K GDI L + ++ V +
Sbjct: 65 SGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGDIAGKLQTGRSRNEQVVTD 120
>pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 436
Score = 28.5 bits (62), Expect = 0.81
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 44 STLEIIQKHRDKIACVMSEKDEGIYDAMNKGIKRSSGDIIALLNSDDFYKDEFVVE 99
S LE I + K V+ DE I+ A + +K GDI LN+ D+ V +
Sbjct: 47 SGLEKISEEWSKGVFVVKGSDEDIHTANERRLKELIGDIAGKLNTGRSRNDQVVTD 102
>pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 434
Score = 28.5 bits (62), Expect = 0.81
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 44 STLEIIQKHRDKIACVMSEKDEGIYDAMNKGIKRSSGDIIALLNSDDFYKDEFVVE 99
S LE I + K V+ DE I+ A + +K GDI LN+ D+ V +
Sbjct: 49 SGLEKISEEWSKGVFVVKGSDEDIHTANERRLKELIGDIAGKLNTGRSRNDQVVTD 104
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 424
Score = 28.5 bits (62), Expect = 0.81
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 44 STLEIIQKHRDKIACVMSEKDEGIYDAMNKGIKRSSGDIIALLNSDDFYKDEFVVE 99
S LE I + K V+ DE I+ A + +K GDI LN+ D+ V +
Sbjct: 35 SGLEKISEEWSKGVFVVKGSDEDIHTANERRLKELIGDIAGKLNTGRSRNDQVVTD 90
>pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 28.1 bits (61), Expect = 1.1
Identities = 17/56 (30%), Positives = 27/56 (47%)
Query: 44 STLEIIQKHRDKIACVMSEKDEGIYDAMNKGIKRSSGDIIALLNSDDFYKDEFVVE 99
S LE I + K V+ + DE I+ A + +K GDI L++ D+ V +
Sbjct: 67 SGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTD 122
>pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 28.1 bits (61), Expect = 1.1
Identities = 17/56 (30%), Positives = 27/56 (47%)
Query: 44 STLEIIQKHRDKIACVMSEKDEGIYDAMNKGIKRSSGDIIALLNSDDFYKDEFVVE 99
S LE I + K V+ + DE I+ A + +K GDI L++ D+ V +
Sbjct: 67 SGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTD 122
>pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux
Transporter Acrb
Length = 1053
Score = 27.3 bits (59), Expect = 1.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 15 KTIEDTILSVLHQTYKNIEYIIIDGASTDST 45
KT++DT+ V+ Q I+ ++ +++DST
Sbjct: 55 KTVQDTVTQVIEQNMNGIDNLMYMSSNSDST 85
>pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 26.6 bits (57), Expect = 3.1
Identities = 16/56 (28%), Positives = 27/56 (47%)
Query: 44 STLEIIQKHRDKIACVMSEKDEGIYDAMNKGIKRSSGDIIALLNSDDFYKDEFVVE 99
S LE I + K V+++ DE I A + +K GDI L++ ++ V +
Sbjct: 65 SGLEKISEELSKGVIVVTQSDEDIQTANERRLKELIGDIAGKLHTGRSRNEQVVTD 120
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 26.6 bits (57), Expect = 3.1
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 44 STLEIIQKHRDKIACVMSEKDEGIYDAMNKGIKRSSGDIIALLNSDDFYKDEFVVE 99
S LE I + K V+ + DE I A + +K GDI L++ D+ V +
Sbjct: 67 SGLEKISEEWSKGVFVVKQSDEDINTANERRLKELIGDIAGKLHTGRSRNDQVVTD 122
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 25.8 bits (55), Expect = 5.2
Identities = 13/35 (37%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 33 EYIIIDGASTDSTLEIIQKHRDKIACVMSEKDEGI 67
EY +++ + D T EIIQKH I + ++ D G+
Sbjct: 85 EYPVLNTSIDDETEEIIQKHYYNIG-IAADTDRGL 118
>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme)
Complexed With Nicotinamide Adenine Dinucleotide (Nad),
And Zinc
pdb|1CDO|B Chain B, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme)
Complexed With Nicotinamide Adenine Dinucleotide (Nad),
And Zinc
Length = 374
Score = 25.4 bits (54), Expect = 6.9
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 12 NSEKTIEDTILSVLHQTYKNIEYIIIDGASTDSTLEIIQKHRDKIACVMSEKDEGIYDAM 71
N IE+ + V H I+ I TD KH+D V+ + GI +++
Sbjct: 18 NKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESV 77
Query: 72 NKGI 75
G+
Sbjct: 78 GPGV 81
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 25.0 bits (53), Expect = 8.9
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 5 SVITACFNSEKT-IEDTILSVLHQTYKNI------EYIIIDGAS----TDSTLEIIQKHR 53
SVI KT I + SV Y+N+ + +I G S T++T ++I +
Sbjct: 135 SVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIM-YL 193
Query: 54 DKIACVMSEKDEGIYD 69
K+AC + +KDE D
Sbjct: 194 AKVACAVKKKDEEASD 209
>pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1B7T|A Chain A, Myosin Digested By Papain
Length = 835
Score = 25.0 bits (53), Expect = 8.9
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 5 SVITACFNSEKT-IEDTILSVLHQTYKNI------EYIIIDGAS----TDSTLEIIQKHR 53
SVI KT I + SV Y+N+ + +I G S T++T ++I +
Sbjct: 135 SVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIM-YL 193
Query: 54 DKIACVMSEKDEGIYD 69
K+AC + +KDE D
Sbjct: 194 AKVACAVKKKDEEASD 209
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 831
Score = 25.0 bits (53), Expect = 8.9
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 5 SVITACFNSEKT-IEDTILSVLHQTYKNI------EYIIIDGAS----TDSTLEIIQKHR 53
SVI KT I + SV Y+N+ + +I G S T++T ++I +
Sbjct: 131 SVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIM-YL 189
Query: 54 DKIACVMSEKDEGIYD 69
K+AC + +KDE D
Sbjct: 190 AKVACAVKKKDEEASD 205
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 25.0 bits (53), Expect = 8.9
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 5 SVITACFNSEKT-IEDTILSVLHQTYKNI------EYIIIDGAS----TDSTLEIIQKHR 53
SVI KT I + SV Y+N+ + +I G S T++T ++I +
Sbjct: 130 SVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIM-YL 188
Query: 54 DKIACVMSEKDEGIYD 69
K+AC + +KDE D
Sbjct: 189 AKVACAVKKKDEEASD 204
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,437,024
Number of Sequences: 13198
Number of extensions: 57165
Number of successful extensions: 155
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 16
length of query: 259
length of database: 2,899,336
effective HSP length: 86
effective length of query: 173
effective length of database: 1,764,308
effective search space: 305225284
effective search space used: 305225284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)