BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645628|ref|NP_207804.1| 7-alpha-hydroxysteroid
dehydrogenase (hdhA) [Helicobacter pylori 26695]
(262 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FMC|A Chain A, 7-Alpha-Hydroxysteroid Dehydrogenase Co... 124 1e-29
pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Redu... 107 1e-24
pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Redu... 107 1e-24
pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bi... 99 5e-22
pdb|1JA9|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydro... 98 8e-22
pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogen... 88 9e-19
pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl C... 87 3e-18
pdb|1I01|E Chain E, Crystal Structure Of Beta-Ketoacyl [acy... 86 6e-18
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-... 85 7e-18
pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With N... 84 2e-17
pdb|1HDC|A Chain A, 3-Alpha, 20-Beta-Hydroxysteroid Dehydro... 81 1e-16
pdb|1AE1|B Chain B, Tropinone Reductase-I Complex With Nadp... 79 4e-16
pdb|1DFH|B Chain B, X-Ray Structure Of Escherichia Coli Eno... 78 9e-16
pdb|1LX6|A Chain A, Crystal Structure Of E. Coli Enoyl Redu... 78 9e-16
pdb|1QSG|G Chain G, Crystal Structure Of Enoyl Reductase In... 78 9e-16
pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph... 62 7e-11
pdb|1BDB| Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase ... 58 1e-09
pdb|1D7O|A Chain A, Crystal Structure Of Brassica Napus Eno... 55 1e-08
pdb|1ENO| Brassica Napus Enoyl Acp ReductaseNAD BINARY CO... 55 1e-08
pdb|1CWU|A Chain A, Brassica Napus Enoyl Acp Reductase A138... 54 2e-08
pdb|1FK8|A Chain A, The Crystal Structure Of The Binary Com... 45 7e-06
pdb|1ENZ| Mol_id: 1; Molecule: Enoyl-Acyl Carrier Protein... 41 1e-04
pdb|1BVR|A Chain A, M.Tb. Enoyl-Acp Reductase (Inha) In Com... 41 1e-04
pdb|1ENY| Mol_id: 1; Molecule: Enoyl-Acyl Carrier Protein... 41 1e-04
pdb|1E6W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogena... 41 2e-04
pdb|1E3W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogena... 41 2e-04
pdb|1E3W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogena... 40 3e-04
pdb|1E7W|A Chain A, One Active Site, Two Modes Of Reduction... 33 0.044
pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase ... 28 1.4
pdb|1F82|A Chain A, Botulinum Neurotoxin Type B Catalytic D... 28 1.4
pdb|1F83|A Chain A, Botulinum Neurotoxin Type B Catalytic D... 28 1.4
pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botuli... 28 1.4
pdb|1PSD|A Chain A, D-3-Phosphoglycerate Dehydrogenase (Pho... 27 1.8
pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor >gi|2... 26 5.3
pdb|1BPX|A Chain A, Human Dna Polymerase Beta Complexed Wit... 25 7.0
pdb|1MIO|B Chain B, Nitrogenase Molybdenum-Iron Protein >gi... 25 7.0
pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida... 25 7.0
pdb|1DV0|A Chain A, Refined Nmr Solution Structure Of The C... 25 9.1
>pdb|1FMC|A Chain A, 7-Alpha-Hydroxysteroid Dehydrogenase Complex With Nadh And
7-Oxo Glycochenodeoxycholic Acid
pdb|1FMC|B Chain B, 7-Alpha-Hydroxysteroid Dehydrogenase Complex With Nadh And
7-Oxo Glycochenodeoxycholic Acid
pdb|1AHI|A Chain A, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh
And 7-Oxo Glycochenodeoxycholic Acid
pdb|1AHI|B Chain B, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh
And 7-Oxo Glycochenodeoxycholic Acid
pdb|1AHH|A Chain A, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nad+
pdb|1AHH|B Chain B, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nad+
Length = 255
Score = 124 bits (310), Expect = 1e-29
Identities = 82/252 (32%), Positives = 135/252 (53%), Gaps = 11/252 (4%)
Query: 7 MKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYS 66
+ K +I+GA GIGK I + FA +G ++ + + N + AN ++++++Q +A A
Sbjct: 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVS-DINADAANHVVDEIQQLGG-QAFACR 66
Query: 67 LNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATV 126
++ ++ + L + +VD ++NA GG PF + Y V
Sbjct: 67 CDITSEQELSALADFAISKLGKVDILVNNA------GGGGPKPF-DMPMADFRRAYELNV 119
Query: 127 LAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGE 186
+F +Q A M+K GGG I++++S N + +SK A +V+ A DLGE
Sbjct: 120 FSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGE 179
Query: 187 FNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSG 246
NIRVN ++ G I TDALK+ EI++K+ + +P++R+G P D+A AA FLC S
Sbjct: 180 KNIRVNGIAPGAILTDALKSVIT-PEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAAS- 237
Query: 247 WLTGQTIVVDGG 258
W++GQ + V GG
Sbjct: 238 WVSGQILTVSGG 249
>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
pdb|1YBV|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And An Active Site Inhibitor
Length = 283
Score = 107 bits (268), Expect = 1e-24
Identities = 76/266 (28%), Positives = 126/266 (46%), Gaps = 20/266 (7%)
Query: 4 SNHMKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAK 63
S ++ K +++GA RGIG+ + + + G + Y + E A +++ +++ S A
Sbjct: 24 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAA 82
Query: 64 AYSLNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYT 123
NV E +F++ F ++D SN S V F + P+ + ++T
Sbjct: 83 CVKANVGVVEDIVRMFEEAVKIFGKLDIVCSN------SGVVSFGHVKDVTPEEFDRVFT 136
Query: 124 ATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVD 183
A+EA K ++ IGG I+ S TG +P +A + SK A+ET + A+D
Sbjct: 137 INTRGQFFVAREAYKHLE-IGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAID 195
Query: 184 LGEFNIRVNAVSGGPIDTDALKAF-PDYVEIKEKVEEQ----------SPLKRMGNPNDL 232
+ + I VN V+ G I TD A +Y+ E + + SPL+R+G P D+
Sbjct: 196 MADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDI 255
Query: 233 AGAAYFLCDETQSGWLTGQTIVVDGG 258
A FL GW+TG+ I +DGG
Sbjct: 256 ARVVCFLA-SNDGGWVTGKVIGIDGG 280
>pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|D Chain D, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0N|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-Nitro-Inden-1-One
pdb|1G0O|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1DOH|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-Nitro-Inden-1-One
pdb|1G0N|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
Length = 283
Score = 107 bits (268), Expect = 1e-24
Identities = 76/266 (28%), Positives = 126/266 (46%), Gaps = 20/266 (7%)
Query: 4 SNHMKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAK 63
S ++ K +++GA RGIG+ + + + G + Y + E A +++ +++ S A
Sbjct: 24 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAA 82
Query: 64 AYSLNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYT 123
NV E +F++ F ++D SN S V F + P+ + ++T
Sbjct: 83 CVKANVGVVEDIVRMFEEAVKIFGKLDIVCSN------SGVVSFGHVKDVTPEEFDRVFT 136
Query: 124 ATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVD 183
A+EA K ++ IGG I+ S TG +P +A + SK A+ET + A+D
Sbjct: 137 INTRGQFFVAREAYKHLE-IGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAID 195
Query: 184 LGEFNIRVNAVSGGPIDTDALKAF-PDYVEIKEKVEEQ----------SPLKRMGNPNDL 232
+ + I VN V+ G I TD A +Y+ E + + SPL+R+G P D+
Sbjct: 196 MADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDI 255
Query: 233 AGAAYFLCDETQSGWLTGQTIVVDGG 258
A FL GW+TG+ I +DGG
Sbjct: 256 ARVVCFLA-SNDGGWVTGKVIGIDGG 280
>pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|B Chain B, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|C Chain C, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|D Chain D, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|E Chain E, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|F Chain F, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|G Chain G, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|H Chain H, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|I Chain I, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|J Chain J, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|K Chain K, Mannitol Dehydrogenase From Agaricus Bisporus
pdb|1H5Q|L Chain L, Mannitol Dehydrogenase From Agaricus Bisporus
Length = 265
Score = 99.0 bits (245), Expect = 5e-22
Identities = 77/258 (29%), Positives = 124/258 (47%), Gaps = 18/258 (6%)
Query: 9 NKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYSLN 68
NKT++++G RGIG A A +G N+A Y ++ +A ++ E V +++ +K KAY +
Sbjct: 14 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIY-RSAADAVEVTEKVGKEFGVKTKAYQCD 72
Query: 69 VLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATVLA 128
V + T+ +QIDAD + I+NA G SVV P L + +Y V
Sbjct: 73 VSNTDIVTKTIQQIDADLGPISGLIANA---GVSVV---KPATELTHEDFAFVYDVNVFG 126
Query: 129 FVVGAQEAAKR-MQKIGGGAIVSLSS-TGNLVYMPNYAG------HGNSKNAVETMVKYA 180
+ AK +QK G+IV SS + ++ + G + +SK A +VK
Sbjct: 127 VFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGL 186
Query: 181 AVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLC 240
A + IRVNA+S G ++TD +I++ PL R P ++ G A L
Sbjct: 187 AAEWASAGIRVNALSPGYVNTDQTAHMDK--KIRDHQASNIPLNRFAQPEEMTGQAILLL 244
Query: 241 DETQSGWLTGQTIVVDGG 258
+ + ++TG +DGG
Sbjct: 245 SD-HATYMTGGEYFIDGG 261
>pdb|1JA9|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Reductase In Complex With Nadph And Pyroquilon
Length = 274
Score = 98.2 bits (243), Expect = 8e-22
Identities = 70/269 (26%), Positives = 126/269 (46%), Gaps = 22/269 (8%)
Query: 2 NGSNHMKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIK 61
+ S + K + +GA RGIG+ I + + G ++ Y + + A +++ +++ K +
Sbjct: 14 DASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELK-KLGAQ 72
Query: 62 AKAYSLNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNI 121
A ++ +P + LF + + F +DF +SN+ G V + + + + + +
Sbjct: 73 GVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNS---GMEV---WCDELEVTQELFDKV 126
Query: 122 YTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAA 181
+ AQ+ K ++ GG I++ S + +PN+A + SK AVE + A
Sbjct: 127 FNLNTRGQFFVAQQGLKHCRR-GGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFA 185
Query: 182 VDLGEFNIRVNAVSGGPIDTD------------ALKAFPDYVEIKEKVEEQSPLKRMGNP 229
VD G + VN ++ G + TD K P +I E + +PLKR+G P
Sbjct: 186 VDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQ-EKIDEGLANMNPLKRIGYP 244
Query: 230 NDLAGAAYFLCDETQSGWLTGQTIVVDGG 258
D+ A LC E +S W+ GQ I + GG
Sbjct: 245 ADIGRAVSALCQE-ESEWINGQVIKLTGG 272
>pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|B Chain B, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|E Chain E, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|F Chain F, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
Length = 261
Score = 88.2 bits (217), Expect = 9e-19
Identities = 63/256 (24%), Positives = 123/256 (47%), Gaps = 11/256 (4%)
Query: 7 MKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYS 66
++ K +VI+G++ G+GK++ +RFA + Y +EAN ++E++ +K +A A
Sbjct: 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEI-KKVGGEAIAVK 63
Query: 67 LNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATV 126
+V L + +F ++D I+NA + + N + +
Sbjct: 64 GDVTVESDVINLVQSAIKEFGKLDVMINNAGLENP------VSSHEMSLSDWNKVIDTNL 117
Query: 127 LAFVVGAQEAAKR-MQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLG 185
+G++EA K ++ G ++++SS + P + + SK ++ M + A++
Sbjct: 118 TGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYA 177
Query: 186 EFNIRVNAVSGGPIDTDA-LKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQ 244
IRVN + G I+T + F D E + VE P+ +G P ++A A +L ++
Sbjct: 178 PKGIRVNNIGPGAINTPINAEKFAD-PEQRADVESMIPMGYIGEPEEIAAVAAWLA-SSE 235
Query: 245 SGWLTGQTIVVDGGTT 260
+ ++TG T+ DGG T
Sbjct: 236 ASYVTGITLFADGGMT 251
>pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein
Reductase From Brassica Napus Complexed With Nadp+
Length = 244
Score = 86.7 bits (213), Expect = 3e-18
Identities = 63/247 (25%), Positives = 117/247 (46%), Gaps = 9/247 (3%)
Query: 12 LVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYSLNVLE 71
+V++GA+RGIGKAI + ++G + Y ++ + A ++ + +E Y +A + +V +
Sbjct: 4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA-YGGQAITFGGDVSK 62
Query: 72 PEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATVLAFVV 131
+ K + +D ++NA I +++ +R+K + + + +
Sbjct: 63 EADVEAMMKTAIDAWGTIDVVVNNAGITRDTLL------IRMKKSQWDEVIDLNLTGVFL 116
Query: 132 GAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFNIRV 191
Q A K M K G I++++S L+ A + +K V K AA + NI V
Sbjct: 117 CTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINV 176
Query: 192 NAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWLTGQ 251
N V G I +D + ++++K+ PL R G P ++AG FL + ++TGQ
Sbjct: 177 NVVCPGFIASDMTAKLGE--DMEKKILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQ 234
Query: 252 TIVVDGG 258
+DGG
Sbjct: 235 AFTIDGG 241
>pdb|1I01|E Chain E, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|B Chain B, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|F Chain F, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|D Chain D, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|G Chain G, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|H Chain H, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli.
pdb|1I01|C Chain C, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein]
Reductase From E. Coli
Length = 244
Score = 85.5 bits (210), Expect = 6e-18
Identities = 66/253 (26%), Positives = 119/253 (46%), Gaps = 14/253 (5%)
Query: 6 HMKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAY 65
+ + K +++GA+RGIG+AI A G + T E + I D K
Sbjct: 2 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATS--ENGAQAISDY---LGANGKGL 56
Query: 66 SLNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTAT 125
LNV +P + ++I A+F VD ++NA I +++ MR+K + N+I
Sbjct: 57 MLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLL------MRMKDEEWNDIIETN 110
Query: 126 VLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLG 185
+ + ++ + M K G I+++ S + A + +K + K A ++
Sbjct: 111 LSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVA 170
Query: 186 EFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQS 245
I VN V+ G I+TD +A D + + + Q P R+G ++A A FL + ++
Sbjct: 171 SRGITVNVVAPGFIETDMTRALSD--DQRAGILAQVPAGRLGGAQEIANAVAFLASD-EA 227
Query: 246 GWLTGQTIVVDGG 258
++TG+T+ V+GG
Sbjct: 228 AYITGETLHVNGG 240
>pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 85.1 bits (209), Expect = 7e-18
Identities = 72/268 (26%), Positives = 117/268 (42%), Gaps = 31/268 (11%)
Query: 10 KTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYSLNV 69
K +++GA +GIGKAI +R + G +A + N A + ++ Q A A ++V
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIA-DYNDATAKAVASEINQAGG-HAVAVKVDV 60
Query: 70 LEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATVLAF 129
+ +Q +Q D ++NA V P + P+ ++ +Y V
Sbjct: 61 SDRDQVFAAVEQARKTLGGFDVIVNNA------GVAPSTPIESITPEIVDKVYNINVKGV 114
Query: 130 VVGAQEAAKRMQKIG-GGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFN 188
+ G Q A + +K G GG I++ S V P A + +SK AV + + AA DL
Sbjct: 115 IWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLG 174
Query: 189 IRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQS---------------PLKRMGNPNDLA 233
I VN G + T P + EI +V E + L R+ P D+A
Sbjct: 175 ITVNGYCPGIVKT------PMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVA 228
Query: 234 GAAYFLCDETQSGWLTGQTIVVDGGTTF 261
+L S ++TGQ++++DGG F
Sbjct: 229 ACVSYLA-SPDSDYMTGQSLLIDGGMVF 255
>pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And
Pseudotropine
pdb|2AE2|B Chain B, Tropinone Reductase-Ii Complexed With Nadp+ And
Pseudotropine
pdb|2AE1| Tropinone Reductase-Ii
Length = 260
Score = 84.0 bits (206), Expect = 2e-17
Identities = 72/264 (27%), Positives = 126/264 (47%), Gaps = 17/264 (6%)
Query: 1 MNGSNHMKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSI 60
M G +++ T +++G +RGIG I A G ++ +T ++N +E N + K
Sbjct: 1 MAGRWNLEGCTALVTGGSRGIGYGIVEELASLGASV-YTCSRNQKELNDCLTQWRSK-GF 58
Query: 61 KAKAYSLNVLEPEQYTELFKQIDADFD-RVDFFISNA--IIYGRSVVGGFAPFMRLKPKG 117
K +A ++ + EL + F +++ ++NA +IY + + +
Sbjct: 59 KVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSIN 118
Query: 118 LNNIYTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMV 177
Y +VLA +A++R G +V +SS + +P A +G +K A++ +
Sbjct: 119 FEAAYHLSVLAHPF--LKASER------GNVVFISSVSGALAVPYEAVYGATKGAMDQLT 170
Query: 178 KYAAVDLGEFNIRVNAVSGGPIDTDALKAF---PDYVEIKEKVEEQSPLKRMGNPNDLAG 234
+ A + + NIRVN V G I T ++ P+ E K+ ++ L+RMG P +LA
Sbjct: 171 RCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAA 230
Query: 235 AAYFLCDETQSGWLTGQTIVVDGG 258
FLC S ++TGQ I VDGG
Sbjct: 231 MVAFLCFPAAS-YVTGQIIYVDGG 253
>pdb|1HDC|A Chain A, 3-Alpha, 20-Beta-Hydroxysteroid Dehydrogenase
(E.C.1.1.1.53) Complexed With Carbenoxolone
pdb|1HDC|B Chain B, 3-Alpha, 20-Beta-Hydroxysteroid Dehydrogenase
(E.C.1.1.1.53) Complexed With Carbenoxolone
pdb|1HDC|C Chain C, 3-Alpha, 20-Beta-Hydroxysteroid Dehydrogenase
(E.C.1.1.1.53) Complexed With Carbenoxolone
pdb|1HDC|D Chain D, 3-Alpha, 20-Beta-Hydroxysteroid Dehydrogenase
(E.C.1.1.1.53) Complexed With Carbenoxolone
pdb|2HSD|A Chain A, 3 Alpha, 20 Beta-Hydroxysteroid Dehydrogenase (Holo Form)
(E.C.1.1.1.53)
pdb|2HSD|B Chain B, 3 Alpha, 20 Beta-Hydroxysteroid Dehydrogenase (Holo Form)
(E.C.1.1.1.53)
pdb|2HSD|C Chain C, 3 Alpha, 20 Beta-Hydroxysteroid Dehydrogenase (Holo Form)
(E.C.1.1.1.53)
pdb|2HSD|D Chain D, 3 Alpha, 20 Beta-Hydroxysteroid Dehydrogenase (Holo Form)
(E.C.1.1.1.53)
Length = 253
Score = 81.3 bits (199), Expect = 1e-16
Identities = 68/259 (26%), Positives = 115/259 (44%), Gaps = 20/259 (7%)
Query: 5 NHMKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKA 64
N + KT++I+G RG+G + +G + + E A ++ A+
Sbjct: 1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAA-----TARELGDAARY 55
Query: 65 YSLNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNN---I 121
L+V E + + +F VD ++NA G + M L+ + + +
Sbjct: 56 QHLDVTIEEDWQRVVAYAREEFGSVDGLVNNA---------GISTGMFLETESVERFRKV 106
Query: 122 YTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAA 181
+ +G + M+ GGG+IV++SS L+ + + +G SK V + K AA
Sbjct: 107 VEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAA 166
Query: 182 VDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCD 241
V+LG IRVN+V G T + E +P+ R+G P ++AGA L
Sbjct: 167 VELGTDRIRVNSVHPGMTYTP--MTAETGIRQGEGNYPNTPMGRVGEPGEIAGAVVKLLS 224
Query: 242 ETQSGWLTGQTIVVDGGTT 260
+T S ++TG + VDGG T
Sbjct: 225 DT-SSYVTGAELAVDGGWT 242
>pdb|1AE1|B Chain B, Tropinone Reductase-I Complex With Nadp
pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp
Length = 273
Score = 79.3 bits (194), Expect = 4e-16
Identities = 67/259 (25%), Positives = 121/259 (45%), Gaps = 14/259 (5%)
Query: 7 MKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYS 66
+K T +++G ++GIG AI A G + +T ++N +E ++ +E +K + +
Sbjct: 19 LKGTTALVTGGSKGIGYAIVEELAGLGARV-YTCSRNEKELDECLEIWREK-GLNVEGSV 76
Query: 67 LNVLEPEQYTELFKQIDADFD-RVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTAT 125
++L + +L + + FD +++ ++NA + F K N I
Sbjct: 77 CDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTE------KDYNIIMGTN 130
Query: 126 VLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLG 185
A +Q A ++ G ++ LSS +P+ + + SK A+ M K A +
Sbjct: 131 FEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWA 190
Query: 186 EFNIRVNAVSGG----PIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCD 241
+ NIRVN+V+ G P+ A+K P E + ++P+ R G P +++ FLC
Sbjct: 191 KDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCF 250
Query: 242 ETQSGWLTGQTIVVDGGTT 260
S ++TGQ I DGG T
Sbjct: 251 PAAS-YITGQIIWADGGFT 268
>pdb|1DFH|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Thieno-Diazaborine
pdb|1QG6|A Chain A, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|B Chain B, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|C Chain C, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|D Chain D, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1D8A|B Chain B, E. Coli Enoyl ReductaseNAD+TRICLOSAN COMPLEX
pdb|1DFH|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Thieno-Diazaborine
pdb|1D8A|A Chain A, E. Coli Enoyl ReductaseNAD+TRICLOSAN COMPLEX
pdb|1DFG|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Benzo-Diazaborine
pdb|1DFG|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Benzo-Diazaborine
pdb|1DFI|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|C Chain C, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|D Chain D, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
Length = 261
Score = 78.2 bits (191), Expect = 9e-16
Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 21/260 (8%)
Query: 7 MKNKTLVISGATRGIGKAIFVRFA--QSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKA 64
+ K ++++G + A + A + G +AFTY +N + ++ E Q S
Sbjct: 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTY-QNDKLKGRVEEFAAQLGS--DIV 59
Query: 65 YSLNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNI--- 121
+V E +F ++ + + D F+ + GFAP +L +N +
Sbjct: 60 LQCDVAEDASIDTMFAELGKVWPKFDGFVHSI---------GFAPGDQLDGDYVNAVTRE 110
Query: 122 ---YTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVK 178
+ ++ A A R G A+++LS G +PNY G +K ++E V+
Sbjct: 111 GFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVR 170
Query: 179 YAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYF 238
Y A +G +RVNA+S GPI T A D+ ++ E +P++R D+ +A F
Sbjct: 171 YMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAF 230
Query: 239 LCDETQSGWLTGQTIVVDGG 258
LC + +G ++G+ + VDGG
Sbjct: 231 LCSDLSAG-ISGEVVHVDGG 249
>pdb|1LX6|A Chain A, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Benzamide Inhibitor
pdb|1LX6|B Chain B, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Benzamide Inhibitor
pdb|1LXC|A Chain A, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Acrylamide Inhibitor
pdb|1LXC|B Chain B, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Acrylamide Inhibitor
pdb|1I2Z|B Chain B, E. Coli Enoyl Reductase In Complex With Nad And Brl-12654
pdb|1C14|A Chain A, Crystal Structure Of E Coli Enoyl Reductase-Nad+-Triclosan
Complex
pdb|1C14|B Chain B, Crystal Structure Of E Coli Enoyl Reductase-Nad+-Triclosan
Complex
pdb|1I2Z|A Chain A, E. Coli Enoyl Reductase In Complex With Nad And Brl-12654
pdb|1I30|A Chain A, E. Coli Enoyl Reductase +nad+sb385826
pdb|1I30|B Chain B, E. Coli Enoyl Reductase +nad+sb385826
Length = 262
Score = 78.2 bits (191), Expect = 9e-16
Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 21/260 (8%)
Query: 7 MKNKTLVISGATRGIGKAIFVRFA--QSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKA 64
+ K ++++G + A + A + G +AFTY +N + ++ E Q S
Sbjct: 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTY-QNDKLKGRVEEFAAQLGS--DIV 60
Query: 65 YSLNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNI--- 121
+V E +F ++ + + D F+ + GFAP +L +N +
Sbjct: 61 LQCDVAEDASIDTMFAELGKVWPKFDGFVHSI---------GFAPGDQLDGDYVNAVTRE 111
Query: 122 ---YTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVK 178
+ ++ A A R G A+++LS G +PNY G +K ++E V+
Sbjct: 112 GFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVR 171
Query: 179 YAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYF 238
Y A +G +RVNA+S GPI T A D+ ++ E +P++R D+ +A F
Sbjct: 172 YMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAF 231
Query: 239 LCDETQSGWLTGQTIVVDGG 258
LC + +G ++G+ + VDGG
Sbjct: 232 LCSDLSAG-ISGEVVHVDGG 250
>pdb|1QSG|G Chain G, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|A Chain A, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|B Chain B, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|C Chain C, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|D Chain D, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|E Chain E, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|F Chain F, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|H Chain H, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
Length = 265
Score = 78.2 bits (191), Expect = 9e-16
Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 21/260 (8%)
Query: 7 MKNKTLVISGATRGIGKAIFVRFA--QSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKA 64
+ K ++++G + A + A + G +AFTY +N + ++ E Q S
Sbjct: 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTY-QNDKLKGRVEEFAAQLGS--DIV 63
Query: 65 YSLNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNI--- 121
+V E +F ++ + + D F+ + GFAP +L +N +
Sbjct: 64 LQCDVAEDASIDTMFAELGKVWPKFDGFVHSI---------GFAPGDQLDGDYVNAVTRE 114
Query: 122 ---YTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVK 178
+ ++ A A R G A+++LS G +PNY G +K ++E V+
Sbjct: 115 GFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVR 174
Query: 179 YAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYF 238
Y A +G +RVNA+S GPI T A D+ ++ E +P++R D+ +A F
Sbjct: 175 YMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAF 234
Query: 239 LCDETQSGWLTGQTIVVDGG 258
LC + +G ++G+ + VDGG
Sbjct: 235 LCSDLSAG-ISGEVVHVDGG 253
>pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|B Chain B, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|C Chain C, Carbonyl Reductase Complexed With Nadph And 2-Propanol
pdb|1CYD|D Chain D, Carbonyl Reductase Complexed With Nadph And 2-Propanol
Length = 244
Score = 62.0 bits (149), Expect = 7e-11
Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 8/171 (4%)
Query: 89 VDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATVLAFVVGAQEAAKRMQKIG-GGA 147
VD ++NA + V+ PF+ + + + ++ + + +Q A+ M G G+
Sbjct: 77 VDLLVNNAAL----VI--MQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGS 130
Query: 148 IVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDALKAF 207
IV++SS V PN + ++K A+ + K A++LG IRVN+V+ + TD K
Sbjct: 131 IVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKV 190
Query: 208 PDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWLTGQTIVVDGG 258
E K++E+ PL++ D+ + FL + +S +G I+VD G
Sbjct: 191 SADPEFARKLKERHPLRKFAEVEDVVNSILFLLSD-RSASTSGGGILVDAG 240
>pdb|1BDB| Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From Pseudomonas
Sp. Lb400
Length = 277
Score = 58.2 bits (139), Expect = 1e-09
Identities = 57/263 (21%), Positives = 111/263 (41%), Gaps = 22/263 (8%)
Query: 7 MKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYS 66
+K + ++I+G G+G+A+ RF G +A ++++ + + ++E +
Sbjct: 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAV-----LDKSAERLAELETDHGDNVLGIV 57
Query: 67 LNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATV 126
+V E + + A F ++D I NA I+ S P L + ++ V
Sbjct: 58 GDVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESL-DAAFDEVFHINV 116
Query: 127 LAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAG--HGNSKNAVETMVKYAAVDL 184
++ + + G I ++S+ G + PN G + +K+A+ +V+ A +L
Sbjct: 117 KGYIHAVKACLPALVASRGNVIFTISNAG---FYPNGGGPLYTAAKHAIVGLVRELAFEL 173
Query: 185 GEFNIRVNAVSGGPIDTD---------ALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGA 235
+ +RVN V G I++D KA V + + ++ P+ RM + GA
Sbjct: 174 APY-VRVNGVGSGGINSDLRGPSSLGMGSKAI-STVPLADMLKSVLPIGRMPEVEEYTGA 231
Query: 236 AYFLCDETQSGWLTGQTIVVDGG 258
F + TG + DGG
Sbjct: 232 YVFFATRGDAAPATGALLNYDGG 254
>pdb|1D7O|A Chain A, Crystal Structure Of Brassica Napus Enoyl Acyl Carrier
Protein Reductase Complexed With Nad And Triclosan
Length = 297
Score = 54.7 bits (130), Expect = 1e-08
Identities = 51/176 (28%), Positives = 82/176 (45%), Gaps = 9/176 (5%)
Query: 85 DFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATVLAFVVGAQEAAKRMQKIG 144
DF +D + +++ G V P + KG +A+ +FV M
Sbjct: 116 DFGSIDILV-HSLANGPEVS---KPLLETSRKGYLAAISASSYSFVSLLSHFLPIMNP-- 169
Query: 145 GGAIVSLSSTGNLVYMPNYAGHGNS-KNAVETMVKYAAVDLG-EFNIRVNAVSGGPIDTD 202
GGA +SL+ + +P Y G +S K A+E+ + A + G + NIRVN +S GP+ +
Sbjct: 170 GGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSR 229
Query: 203 ALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWLTGQTIVVDGG 258
A KA + E +P+++ +++ AA FL S +TG TI VD G
Sbjct: 230 AAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASA-ITGATIYVDNG 284
>pdb|1ENO| Brassica Napus Enoyl Acp ReductaseNAD BINARY COMPLEX AT Ph 8.0 And
Room Temperature
pdb|1ENP| Brassica Napus Enoyl Acp ReductaseNADH BINARY COMPLEX AT Ph 8.0
And Room Temperature
Length = 312
Score = 54.7 bits (130), Expect = 1e-08
Identities = 51/176 (28%), Positives = 82/176 (45%), Gaps = 9/176 (5%)
Query: 85 DFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYTATVLAFVVGAQEAAKRMQKIG 144
DF +D + +++ G V P + KG +A+ +FV M
Sbjct: 126 DFGSIDILV-HSLANGPEVS---KPLLETSRKGYLAAISASSYSFVSLLSHFLPIMNP-- 179
Query: 145 GGAIVSLSSTGNLVYMPNYAGHGNS-KNAVETMVKYAAVDLG-EFNIRVNAVSGGPIDTD 202
GGA +SL+ + +P Y G +S K A+E+ + A + G + NIRVN +S GP+ +
Sbjct: 180 GGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSR 239
Query: 203 ALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWLTGQTIVVDGG 258
A KA + E +P+++ +++ AA FL S +TG TI VD G
Sbjct: 240 AAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASA-ITGATIYVDNG 294
>pdb|1CWU|A Chain A, Brassica Napus Enoyl Acp Reductase A138g Mutant Complexed
With Nad+ And Thienodiazaborine
pdb|1CWU|B Chain B, Brassica Napus Enoyl Acp Reductase A138g Mutant Complexed
With Nad+ And Thienodiazaborine
Length = 296
Score = 53.9 bits (128), Expect = 2e-08
Identities = 39/116 (33%), Positives = 61/116 (51%), Gaps = 3/116 (2%)
Query: 145 GGAIVSLSSTGNLVYMPNYAGHGNS-KNAVETMVKYAAVDLG-EFNIRVNAVSGGPIDTD 202
GGA +SL+ + +P Y G +S K A+E+ + A + G + NIRVN +S GP+ +
Sbjct: 169 GGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSR 228
Query: 203 ALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWLTGQTIVVDGG 258
A KA + E +P+++ +++ AA FL S +TG TI VD G
Sbjct: 229 AAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASA-ITGATIYVDNG 283
>pdb|1FK8|A Chain A, The Crystal Structure Of The Binary Complex With Nad Of 3-
Alpha-Hydroxysteroid Dehydrogenase From Comamonas
Testosteroni, A Member Of The Short Chain
DehydrogenaseREDUCTASE FAMILY
pdb|1FJH|A Chain A, The Crystal Structure Of 3-Alpha-Hydroxysteroid
Dehydrogenase From Comamonas Testosteroni, A Member Of
The Short Chain DehydrogenaseREDUCTASE FAMILY
pdb|1FJH|B Chain B, The Crystal Structure Of 3-Alpha-Hydroxysteroid
Dehydrogenase From Comamonas Testosteroni, A Member Of
The Short Chain DehydrogenaseREDUCTASE FAMILY
pdb|1FK8|B Chain B, The Crystal Structure Of The Binary Complex With Nad Of 3-
Alpha-Hydroxysteroid Dehydrogenase From Comamonas
Testosteroni, A Member Of The Short Chain
DehydrogenaseREDUCTASE FAMILY
Length = 257
Score = 45.4 bits (106), Expect = 7e-06
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 155 GNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDALKA---FPDYV 211
GNL Y SKNA+ V+ A GE +R+N ++ G +T L+A P Y
Sbjct: 151 GNLAY-------AGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYG 203
Query: 212 EIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWLTGQTIVVDGG 258
E K P+ R P+++A FL S ++ G IV+DGG
Sbjct: 204 ESIAKF--VPPMGRRAEPSEMASVIAFLMSPAAS-YVHGAQIVIDGG 247
>pdb|1ENZ| Mol_id: 1; Molecule: Enoyl-Acyl Carrier Protein (Acp) Reductase;
Chain: Null; Synonym: Inha; Engineered: Yes; Mutation:
S94a
Length = 268
Score = 41.2 bits (95), Expect = 1e-04
Identities = 36/127 (28%), Positives = 60/127 (46%), Gaps = 17/127 (13%)
Query: 145 GGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDAL 204
GG+IV + + MP Y +K+A+E++ ++ A + G++ +R N V+ GPI T A+
Sbjct: 140 GGSIVGMDFDPSRA-MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAM 198
Query: 205 KAF----------PDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWL---TGQ 251
A ++E ++++P+ N D A +C S WL TG
Sbjct: 199 SAIVGGALGEEAGAQIQLLEEGWDQRAPIG--WNMKDATPVAKTVC-ALLSDWLPATTGD 255
Query: 252 TIVVDGG 258
I DGG
Sbjct: 256 IIYADGG 262
>pdb|1BVR|A Chain A, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty-Acyl-Substrate
pdb|1BVR|B Chain B, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty-Acyl-Substrate
pdb|1BVR|C Chain C, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty-Acyl-Substrate
pdb|1BVR|D Chain D, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty-Acyl-Substrate
pdb|1BVR|E Chain E, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty-Acyl-Substrate
pdb|1BVR|F Chain F, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty-Acyl-Substrate
Length = 268
Score = 41.2 bits (95), Expect = 1e-04
Identities = 36/127 (28%), Positives = 60/127 (46%), Gaps = 17/127 (13%)
Query: 145 GGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDAL 204
GG+IV + + MP Y +K+A+E++ ++ A + G++ +R N V+ GPI T A+
Sbjct: 140 GGSIVGMDFDPSRA-MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAM 198
Query: 205 KAF----------PDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWL---TGQ 251
A ++E ++++P+ N D A +C S WL TG
Sbjct: 199 SAIVGGALGEEAGAQIQLLEEGWDQRAPIG--WNMKDATPVAKTVC-ALLSDWLPATTGD 255
Query: 252 TIVVDGG 258
I DGG
Sbjct: 256 IIYADGG 262
>pdb|1ENY| Mol_id: 1; Molecule: Enoyl-Acyl Carrier Protein (Acp) Reductase;
Chain: Null; Synonym: Inha; Engineered: Yes
pdb|1ZID| Long Fatty Acid Chain Enoyl-Acp Reductase (Inha) In Complex With
An Isonicotinic-Acyl-Nadh Inhibitor
Length = 268
Score = 41.2 bits (95), Expect = 1e-04
Identities = 36/127 (28%), Positives = 60/127 (46%), Gaps = 17/127 (13%)
Query: 145 GGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDAL 204
GG+IV + + MP Y +K+A+E++ ++ A + G++ +R N V+ GPI T A+
Sbjct: 140 GGSIVGMDFDPSRA-MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAM 198
Query: 205 KAF----------PDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQSGWL---TGQ 251
A ++E ++++P+ N D A +C S WL TG
Sbjct: 199 SAIVGGALGEEAGAQIQLLEEGWDQRAPIG--WNMKDATPVAKTVC-ALLSDWLPATTGD 255
Query: 252 TIVVDGG 258
I DGG
Sbjct: 256 IIYADGG 262
>pdb|1E6W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
Length = 260
Score = 40.8 bits (94), Expect = 2e-04
Identities = 58/260 (22%), Positives = 94/260 (35%), Gaps = 21/260 (8%)
Query: 7 MKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYS 66
+K VI+G G+G + R G N E E +K
Sbjct: 7 VKGLVAVITGGASGLGLSTAKRLVGQGATAVLLDVPNSEG-----ETEAKKLGGNCIFAP 61
Query: 67 LNVLEPEQYTELFKQIDADFDRVDFFISNAIIY--------GRSVVGGFAPFMRLKPKGL 118
NV ++ F R+D ++ A I ++ V F R+ +
Sbjct: 62 ANVTSEKEVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVI--NV 119
Query: 119 NNIYTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVK 178
N I T V+ V G + Q G I++ +S A + SK + M
Sbjct: 120 NLIGTFNVIRLVAGVMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTL 179
Query: 179 YAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPL-KRMGNPNDLAGAAY 237
A DL IRV ++ G T L PD +++ + Q P R+G+P + A
Sbjct: 180 PIARDLAPIGIRVVTIAPGLFATPLLTTLPD--KVRNFLASQVPFPSRLGDPAEYAHLVQ 237
Query: 238 FLCDETQSGWLTGQTIVVDG 257
+ ++ +L G+ I +DG
Sbjct: 238 MV---IENPFLNGEVIRLDG 254
>pdb|1E3W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3S|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
Length = 261
Score = 40.8 bits (94), Expect = 2e-04
Identities = 58/260 (22%), Positives = 94/260 (35%), Gaps = 21/260 (8%)
Query: 7 MKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYS 66
+K VI+G G+G + R G N E E +K
Sbjct: 8 VKGLVAVITGGASGLGLSTAKRLVGQGATAVLLDVPNSEG-----ETEAKKLGGNCIFAP 62
Query: 67 LNVLEPEQYTELFKQIDADFDRVDFFISNAIIY--------GRSVVGGFAPFMRLKPKGL 118
NV ++ F R+D ++ A I ++ V F R+ +
Sbjct: 63 ANVTSEKEVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVI--NV 120
Query: 119 NNIYTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVK 178
N I T V+ V G + Q G I++ +S A + SK + M
Sbjct: 121 NLIGTFNVIRLVAGVMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTL 180
Query: 179 YAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPL-KRMGNPNDLAGAAY 237
A DL IRV ++ G T L PD +++ + Q P R+G+P + A
Sbjct: 181 PIARDLAPIGIRVVTIAPGLFATPLLTTLPD--KVRNFLASQVPFPSRLGDPAEYAHLVQ 238
Query: 238 FLCDETQSGWLTGQTIVVDG 257
+ ++ +L G+ I +DG
Sbjct: 239 MV---IENPFLNGEVIRLDG 255
>pdb|1E3W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
Length = 261
Score = 40.0 bits (92), Expect = 3e-04
Identities = 58/260 (22%), Positives = 93/260 (35%), Gaps = 21/260 (8%)
Query: 7 MKNKTLVISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYS 66
+K VI+G G+G + R G N E E +K
Sbjct: 8 VKGLVAVITGGASGLGLSTAKRLVGQGATAVLLDVPNSEG-----ETEAKKLGGNCIFAP 62
Query: 67 LNVLEPEQYTELFKQIDADFDRVDFFISNAIIY--------GRSVVGGFAPFMRLKPKGL 118
NV ++ F R+D ++ A I ++ V F R+ +
Sbjct: 63 ANVTSEKEVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVI--NV 120
Query: 119 NNIYTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVK 178
N I T V+ V G + Q G I++ +S A + SK + M
Sbjct: 121 NLIGTFNVIRLVAGVMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTL 180
Query: 179 YAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPL-KRMGNPNDLAGAAY 237
A DL IRV ++ G T L PD ++ + Q P R+G+P + A
Sbjct: 181 PIARDLAPIGIRVVTIAPGLFATPLLTTLPD--TVRNFLASQVPFPSRLGDPAEYAHLVQ 238
Query: 238 FLCDETQSGWLTGQTIVVDG 257
+ ++ +L G+ I +DG
Sbjct: 239 MV---IENPFLNGEVIRLDG 255
>pdb|1E7W|A Chain A, One Active Site, Two Modes Of Reduction Correlate The
Mechanism Of Leishmania Pteridine Reductase With Pterin
Metabolism And Antifolate Drug Resistance In Trpanosomes
pdb|1E7W|B Chain B, One Active Site, Two Modes Of Reduction Correlate The
Mechanism Of Leishmania Pteridine Reductase With Pterin
Metabolism And Antifolate Drug Resistance In Trpanosomes
Length = 291
Score = 32.7 bits (73), Expect = 0.044
Identities = 60/289 (20%), Positives = 117/289 (39%), Gaps = 40/289 (13%)
Query: 5 NHMKNKTL---VISGATRGIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQK---Y 58
+HM T+ +++GA + +G++I G + Y+++ EAN + + +
Sbjct: 2 SHMTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNS 61
Query: 59 SIKAKAYSLNVLEP--------------EQYTELFKQIDADFDRVDFFISNAIIYG---- 100
+I +A NV + EL + R D ++NA +
Sbjct: 62 AITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPL 121
Query: 101 -RSVVGGFAPFM---RLKPKGLNNIYTATVLA--FVVG--AQEAAKRMQKIGGGAIVSLS 152
R+ G P + +++ + +A F++ A A K G ++
Sbjct: 122 LRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIIN 181
Query: 153 STGNLVYMP--NYAGHGNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDALKAFPDY 210
+ P Y + +K A+E + + AA++L IRVN V GP + + P
Sbjct: 182 MVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGV--GPGLSVLVDDMPP- 238
Query: 211 VEIKEKVEEQSPL-KRMGNPNDLAGAAYFLCDETQSGWLTGQTIVVDGG 258
+ E + PL +R + +++ FLC +++ ++TG + VDGG
Sbjct: 239 -AVWEGHRSKVPLYQRDSSAAEVSDVVIFLC-SSKAKYITGTCVKVDGG 285
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 27.7 bits (60), Expect = 1.4
Identities = 22/77 (28%), Positives = 35/77 (44%), Gaps = 1/77 (1%)
Query: 185 GEFNIRVNAVSGGPIDTDALKAFPDYVEIKEKVEEQSPLKRMGNPNDLAGAAYFLCDETQ 244
G++ I ++ S PI +A K I E+V LK +PN +AGA F E +
Sbjct: 142 GQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPK 201
Query: 245 SGWLTGQTIVV-DGGTT 260
+ +++ GG T
Sbjct: 202 FYVFKAKAVILATGGAT 218
>pdb|1F82|A Chain A, Botulinum Neurotoxin Type B Catalytic Domain
Length = 424
Score = 27.7 bits (60), Expect = 1.4
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 25 IFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYSLNVLEPEQYTELFKQIDA 84
+ V + +NI NK ++ K +ED E KYSI + E + +L+K +
Sbjct: 305 VLVCISDPNININIYKNK-FKDKYKFVEDSEGKYSI----------DVESFDKLYKSLMF 353
Query: 85 DFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYT 123
F + + I S P +++K N IYT
Sbjct: 354 GFTETNIAENYKIKTRASYFSDSLPPVKIKNLLDNEIYT 392
>pdb|1F83|A Chain A, Botulinum Neurotoxin Type B Catalytic Domain With
Synaptobrevin-Ii Bound
Length = 425
Score = 27.7 bits (60), Expect = 1.4
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 25 IFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYSLNVLEPEQYTELFKQIDA 84
+ V + +NI NK ++ K +ED E KYSI + E + +L+K +
Sbjct: 305 VLVCISDPNININIYKNK-FKDKYKFVEDSEGKYSI----------DVESFDKLYKSLMF 353
Query: 85 DFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYT 123
F + + I S P +++K N IYT
Sbjct: 354 GFTETNIAENYKIKTRASYFSDSLPPVKIKNLLDNEIYT 392
>pdb|1I1E|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With Doxorubicin
pdb|1EPW|A Chain A, Crystal Structure Of Clostridium Neurotoxin Type B
pdb|1F31|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin B
Complexed With A Trisaccharide
Length = 1290
Score = 27.7 bits (60), Expect = 1.4
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 25 IFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKAYSLNVLEPEQYTELFKQIDA 84
+ V + +NI NK ++ K +ED E KYSI + E + +L+K +
Sbjct: 305 VLVCISDPNININIYKNK-FKDKYKFVEDSEGKYSI----------DVESFDKLYKSLMF 353
Query: 85 DFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGLNNIYT 123
F + + I S P +++K N IYT
Sbjct: 354 GFTETNIAENYKIKTRASYFSDSLPPVKIKNLLDNEIYT 392
>pdb|1PSD|A Chain A, D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate
Dehydrogenase) (E.C.1.1.1.95)
pdb|1PSD|B Chain B, D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate
Dehydrogenase) (E.C.1.1.1.95)
Length = 409
Score = 27.3 bits (59), Expect = 1.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 20 GIGKAIFVRFAQSGVNIAFTYNKNVEEANKIIEDVEQKYSIKAKA 64
G+ A+ FA+ GVNIA Y + + ++ D+E + KA
Sbjct: 348 GVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKA 392
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 25.8 bits (55), Expect = 5.3
Identities = 27/120 (22%), Positives = 46/120 (37%), Gaps = 15/120 (12%)
Query: 59 SIKAKAYSLNVLEPEQYTELFKQIDADFDRVDFFISNAIIYGRSVVGGFAPFMRLKPKGL 118
+++ YS N++ Y E + + F+ +N +S F RL P+
Sbjct: 81 TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFPEYK 140
Query: 119 NN-----------IYTATVLAFVVGAQEAAKRMQ--KIGGGAIVSLSSTGNLVYMPNYAG 165
NN IY T+ V+ Q+ + +Q +G G + +LVY Y G
Sbjct: 141 NNKLFLTGESYAGIYIPTLAVLVM--QDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHG 198
>pdb|1BPX|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna
pdb|1BPZ|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
pdb|9ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Native Structure
pdb|9ICX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna (Non Gapped Dna Only)
pdb|9ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(0.1 Millimolar) And Zncl2 (0.2 Millimolar)
pdb|8ICK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mgcl2 (5 Millimolar), And Mncl2 (5
Millimolar)
pdb|8ICO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Azt-Tp (1 Millimolar) And Mncl2 (5 Millimolar)
pdb|1ZQA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar) At Ph 7.5
pdb|1ZQI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar)
pdb|9ICK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of
Artificial Mother Liquor
pdb|8ICN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Atp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of
Pyrophosphate (1 Millimolar) And Mncl2 (5 Millimolar)
pdb|7ICT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.01 Millimolar) And Mgcl2 (1 Millimolar)
pdb|8ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|1ZQP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Nacl (75 Millimolar)
pdb|7ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(0.1 Millimolar)
pdb|7ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(0.1 Millimolar)
pdb|7ICN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Nicl2
(0.1 Millimolar)
pdb|7ICS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.001 Millimolar)
pdb|7ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar) And In The Absence Of Nacl
pdb|8ICC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna (No 5'-Phosphate)
pdb|9ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|8ICR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Datp (1
Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Ddctp
(10 Millimolar) And Mncl2 (10 Millimolar)
pdb|8ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dttp (1
Millimolar) And Mncl2 (5 Millimolar)
pdb|7ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.1 Millimolar) (Four-Day Soak)
pdb|8ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(10 Millimolar) And Mgcl2 (50 Millimolar)
pdb|8ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mncl2 (5 Millimolar), And Ammonium
Sulfate (75 Millimolar)
pdb|1ZQF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cscl
(150 Millimolar)
pdb|7ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cocl2
(0.1 Millimolar)
pdb|7ICK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mgcl2
(0.1 Millimolar)
pdb|9ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Double Stranded Dna (No 5'-Phosphate)
pdb|9ICO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dttp (1
Millimolar) And Mgcl2 (5 Millimolar)
pdb|9ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|8ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Ddatp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|9ICR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dctp (1
Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dgtp (1
Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cacl2 (5 Millimolar)
pdb|9ICN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Ddctp
(20 Millimolar) And Mgcl2 (20 Millimolar)
pdb|7ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.01 Millimolar)
pdb|7ICR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(1 Millimolar)
pdb|9ICA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Datp(Alpha)s (1 Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICY|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna (Non Gapped Dna Only)
pdb|1ZQN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(15 Millimolar) And Nacl (15 Millimolar)
pdb|7ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.01 Millimolar)
pdb|7ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(1.0 Millimolar)
pdb|8ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (0.1 Millimolar) And Mncl2 (0.5 Millimolar)
pdb|8ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Nicl2 (5 Millimolar)
pdb|8ICT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICY|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Crcl3 (5 Millimolar)
pdb|7ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar) (Four-Day Soak)
pdb|9ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|8ICZ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (1 Millimolar), Mncl2 (5 Millimolar), And Lithium
Sulfate (75 Millimolar)
pdb|9ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna
pdb|1ZQG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 6.5
pdb|1ZQH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 7.5
pdb|7ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar)
pdb|8ICB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Artificial Mother Liquor
pdb|9ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of
Pyrophosphate (1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|8ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cdcl2 (1 Millimolar)
pdb|9ICB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cocl2 (5 Millimolar)
pdb|8ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|1ZQB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(150 Millimolar)
pdb|1ZQC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar)
pdb|1ZQM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar)
pdb|1ZQK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Mgcl2 (75 Millimolar)
pdb|1ZQO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Nacl (15 Millimolar)
pdb|8ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|1ZQQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Nacl (15 Millimolar)
pdb|7ICO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.1 Millimolar)
pdb|7ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar)
pdb|1ZQL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
pdb|1ZQJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
pdb|1ZQS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Tlcl
(0.5 Millimolar)
pdb|8ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|8ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|9ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cucl2 (0.1 Millimolar)
pdb|1ZQT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(0.01 Millimolar) And Zncl2 (0.02 Millimolar)
pdb|7ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cucl2
(0.1 Millimolar)
pdb|1ZQD|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(150 Millimolar)
pdb|1ZQR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Nicl2
(15 Millimolar)
pdb|1ZQE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(Saturated Solution)
pdb|1BPY|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna And
Ddctp
Length = 335
Score = 25.4 bits (54), Expect = 7.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 154 TGNLVYMPNYAGHGNSKNAVETMVKYAAVDLGEFNIRVNAVSGGPIDTDALKAFPDYVEI 213
TG+ ++ N H K T+ +Y LG V V+G P+ D+ K DY++
Sbjct: 273 TGSDIFNKNMRAHALEKGF--TINEYTIRPLG-----VTGVAGEPLPVDSEKDIFDYIQW 325
Query: 214 K 214
K
Sbjct: 326 K 326
>pdb|1MIO|B Chain B, Nitrogenase Molybdenum-Iron Protein
pdb|1MIO|D Chain D, Nitrogenase Molybdenum-Iron Protein
Length = 458
Score = 25.4 bits (54), Expect = 7.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 161 PNYAGHGNS--KNAVETMVKYAAVDLGEFNIRVNAVSG--GPIDTDALKAFPDYVEI 213
P+Y G + N V+ +V Y + + G N ++N + G GP D +K + ++I
Sbjct: 140 PSYVGSHVTGFANMVQGIVNYLSENTGAKNGKINVIPGFVGPADMREIKRLFEAMDI 196
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase E1b)
Length = 407
Score = 25.4 bits (54), Expect = 7.0
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 120 NIYTATVLAFVVGAQEAAKRMQKIGGGAIVSLSSTGNLVYMPNYAGHGNSKNAVETMVKY 179
++Y A V+ VV Q A Q I GG + + G + + GN AV ++
Sbjct: 228 HVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRW 287
Query: 180 AA 181
AA
Sbjct: 288 AA 289
>pdb|1DV0|A Chain A, Refined Nmr Solution Structure Of The C-Terminal Uba
Domain Of The Human Homologue Of Rad23a (Hhr23a)
Length = 47
Score = 25.0 bits (53), Expect = 9.1
Identities = 12/32 (37%), Positives = 18/32 (55%), Gaps = 3/32 (9%)
Query: 214 KEKVEEQSPLKRMGNPNDLAGAAYFLCDETQS 245
KE +E LK +G P L AYF C++ ++
Sbjct: 5 KEAIER---LKALGFPESLVIQAYFACEKNEN 33
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,523,905
Number of Sequences: 13198
Number of extensions: 62552
Number of successful extensions: 238
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 42
length of query: 262
length of database: 2,899,336
effective HSP length: 86
effective length of query: 176
effective length of database: 1,764,308
effective search space: 310518208
effective search space used: 310518208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)