BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645629|ref|NP_207805.1| hypothetical protein
[Helicobacter pylori 26695]
         (168 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1L9V|A  Chain A, Non Structural Protein Encoded By Gene ...    27  1.2
pdb|1AUA|    Phosphatidylinositol Transfer Protein Sec14p Fr...    24  7.8

>pdb|1L9V|A Chain A, Non Structural Protein Encoded By Gene Segment 8 Of
           Rotavirus (Nsp2), An Ntpase, Ssrna Binding And Nucleic
           Acid Helix-Destabilizing Protein
          Length = 317

 Score = 26.9 bits (58), Expect = 1.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 57  FENFAFSFLAVILCAILSYLVPNASNALSLIGNGVSIFYLHKL 99
           FE   F+ +A+++C  L+ L    +N  +++   VSI +L  L
Sbjct: 72  FETIMFTKVAMLICEALNSLKVTQANVSNVLSRVVSIRHLENL 114



>pdb|1AUA|   Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces
           Cerevisiae
          Length = 296

 Score = 24.3 bits (51), Expect = 7.8
 Identities = 15/79 (18%), Positives = 34/79 (42%), Gaps = 6/79 (7%)

Query: 40  GAIGFYRLSKITRHLSFFENFAFSFLAVI-----LCA-ILSYLVPNASNALSLIGNGVSI 93
           GA+  + ++K+T      +N  + + +V+      C+    +LV  +   + L G  +S 
Sbjct: 124 GAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISS 183

Query: 94  FYLHKLYRELSLYTQERFF 112
            Y    Y   + Y  + ++
Sbjct: 184 AYSVMSYVREASYISQNYY 202



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.338    0.149    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 718,130
Number of Sequences: 13198
Number of extensions: 23677
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 2
length of query: 168
length of database: 2,899,336
effective HSP length: 82
effective length of query: 86
effective length of database: 1,817,100
effective search space: 156270600
effective search space used: 156270600
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 51 (24.3 bits)