BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645630|ref|NP_207806.1|
phosphatidylglycerophosphate synthase (pgsA) [Helicobacter pylori
26695]
         (200 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1PMT|    Glutathione Transferase From Proteus Mirabilis ...    27  1.2
pdb|1QOR|A  Chain A, Quinone Oxidoreductase Complexed With N...    26  3.6

>pdb|1PMT|   Glutathione Transferase From Proteus Mirabilis
 pdb|2PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
 pdb|2PMT|B Chain B, Glutathione Transferase From Proteus Mirabilis
 pdb|2PMT|C Chain C, Glutathione Transferase From Proteus Mirabilis
 pdb|2PMT|D Chain D, Glutathione Transferase From Proteus Mirabilis
          Length = 203

 Score = 27.3 bits (59), Expect = 1.2
 Identities = 20/59 (33%), Positives = 28/59 (46%)

Query: 135 SGLRVLAANEKKDIPVNALGKYKTVSQVVAIGALLADVTYSYALVAIAVFLTLYSGIDY 193
           SG   LA N K  +PV  L     +++ VAI   LAD+     L+A    L  Y  I++
Sbjct: 39  SGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLADLKPDRNLIAPPKALERYHQIEW 97



>pdb|1QOR|A Chain A, Quinone Oxidoreductase Complexed With Nadph
 pdb|1QOR|B Chain B, Quinone Oxidoreductase Complexed With Nadph
          Length = 327

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 135 SGLRVLAANEKKDIPVNALGKYKTVSQVVAIGA--LLADVTYSYALVAIAVFLTLY 188
           SG++ + A ++     +ALG Y +V  ++A  A  L A +++  A  +    LT+Y
Sbjct: 74  SGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVY 129



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.332    0.146    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 974,104
Number of Sequences: 13198
Number of extensions: 32979
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 2
length of query: 200
length of database: 2,899,336
effective HSP length: 84
effective length of query: 116
effective length of database: 1,790,704
effective search space: 207721664
effective search space used: 207721664
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)