BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645633|ref|NP_207809.1| serine protease (htrA)
[Helicobacter pylori 26695]
(443 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra) >gi|20... 270 2e-73
pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial ... 122 8e-29
pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococc... 50 7e-07
pdb|1QTF|A Chain A, Crystal Structure Of Exfoliative Toxin B 37 0.006
pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr... 36 0.010
pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf In... 36 0.010
pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXC... 36 0.010
pdb|2SGP|E Chain E, Pro 18 Variant Of Turkey Ovomucoid Inhi... 33 0.049
pdb|1SGP|E Chain E, Ala 18 Variant Of Turkey Ovomucoid Inhi... 33 0.049
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz... 32 0.14
pdb|2SFA| Serine Proteinase From Streptomyces Fradiae Atc... 30 0.42
pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing... 30 0.54
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing... 30 0.71
pdb|2SGA| Proteinase A (Component Of The Extracellular Fi... 29 0.93
pdb|1FEP|A Chain A, Ferric Enterobactin Receptor 29 1.2
pdb|1HU4|A Chain A, Crystal Structure Of Porcine Testicular... 29 1.2
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Ph... 28 1.6
pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-... 28 1.6
pdb|1GYP|A Chain A, Mol_id: 1; Molecule: Glyceraldehyde-3-P... 28 1.6
pdb|1GGA|A Chain A, D-Glyceraldehyde-3-Phosphate Dehydrogen... 28 1.6
pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonucleas... 28 2.1
pdb|1BEF|A Chain A, Crystal Structure Of Dengue Virus Ns3 S... 28 2.7
pdb|1DF9|A Chain A, Dengue Virus Ns3-Protease Complexed Wit... 28 2.7
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 27 3.5
pdb|1EFP|A Chain A, Electron Transfer Flavoprotein (Etf) Fr... 27 6.0
pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase... 26 7.9
pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex W... 26 7.9
pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amyla... 26 7.9
pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Co... 26 7.9
pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mu... 26 7.9
>pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
Length = 448
Score = 270 bits (690), Expect = 2e-73
Identities = 166/398 (41%), Positives = 241/398 (59%), Gaps = 27/398 (6%)
Query: 43 NDPFFQQFFGDLGGMIPKERMERALGSGVIISKD-GYIVTNNHVIDGADKIKVTIPGSNK 101
+ PF Q G GG +++ ALGSGVII D GY+VTNNHV+D A IKV + K
Sbjct: 65 SSPFCQGGQGGNGG--GQQQKFXALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRK 122
Query: 102 EYSATLVGTDSESDLAVIRITKD-NLPTIKFSDSNDISVGDLVFAIGNPFGVGESVTQGI 160
+ A VG D SD+A+I+I NL IK +DS+ + VGD AIGNPFG+GE+VT GI
Sbjct: 123 -FDAKXVGKDPRSDIALIQIQNPKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGI 181
Query: 161 VSALNKSGIGINSYENFIQTDASINPGNSGGALIDSRGGLVGINTAIISKTGGNHGIGFA 220
VSAL +SG+ +YENFIQTDA+IN GN+GGAL++ G L+GINTAI++ GGN GIGFA
Sbjct: 182 VSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFA 241
Query: 221 IPSNMVKDTVTQLIKTGKIERGYLGVGLQDLSGDLQNS--YDNKEGAVVISVEKDSPAKK 278
IPSN VK+ +Q ++ G+++RG LG+ +L+ +L + D + GA V V +S A K
Sbjct: 242 IPSNXVKNLTSQXVEYGQVKRGELGIXGTELNSELAKAXKVDAQRGAFVSQVLPNSSAAK 301
Query: 279 AGILVWDLITEVNGKKVKNTNELRNLIGSMLPNQRVTLKVIRDKKERAFTLTLAERKNPN 338
AGI D+IT +NGK + + LR +G+ ++TL ++RD K+ L L ++ + N
Sbjct: 302 AGIKAGDVITSLNGKPISSFAALRAQVGTXPVGSKLTLGLLRDGKQVNVNLEL-QQSSQN 360
Query: 339 KKETISAQNGAQGQLNGLQVEDLTQETKRSMRLSDDVQGVLVSQVNENSPAEQAGFRQGN 398
+ ++ S NG +G + +D QGV+V+ V +PA Q G ++G+
Sbjct: 361 QVDSSSIFNGIEGAEXSNKGKD---------------QGVVVNNVKTGTPAAQIGLKKGD 405
Query: 399 IITKIEEVEVKSVADFNHALEKYKGKPKRFLVLDLNQG 436
+I + VK++A+ L+ KP L L++ +G
Sbjct: 406 VIIGANQQAVKNIAELRKVLD---SKPS-VLALNIQRG 439
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 122 bits (306), Expect = 8e-29
Identities = 82/252 (32%), Positives = 141/252 (55%), Gaps = 24/252 (9%)
Query: 68 GSGVIISKDGYIVTNNHVIDGADKIKVTIPGSNKEYSATLVGTDSESDLAVIRI-TKDNL 126
GSG +++ DG IVTN HV+ +++V + S Y A + D +D+A +RI TK+ L
Sbjct: 49 GSGFVVAADGLIVTNAHVVADRRRVRVRLL-SGDTYEAVVTAVDPVADIATLRIQTKEPL 107
Query: 127 PTIKFSDSNDISVGDLVFAIGNPFGVGESVTQGIVSALNKSG--IGI-NSYENFIQTDAS 183
PT+ S D+ G+ V A+G+PF + ++T GIVS+ + +G+ + +IQTDA+
Sbjct: 108 PTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQTDAA 167
Query: 184 INPGNSGGALIDSRGGLVGINTAIISKTGGNHGIGFAIPSNMVKDTVTQLIKTGK----- 238
I+ GN+GG L++ G ++G+NT ++ GI FAIPS+ +++ + + K
Sbjct: 168 IDFGNAGGPLVNLDGEVIGVNTMKVTA-----GISFAIPSDRLREFLHRGEKKNSSSGIS 222
Query: 239 -IERGYLGVGLQDLS----GDLQ----NSYDNKEGAVVISVEKDSPAKKAGILVWDLITE 289
+R Y+GV + LS +LQ + D + G ++ V SPA +AG+ D+I
Sbjct: 223 GSQRRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILA 282
Query: 290 VNGKKVKNTNEL 301
+ + V+N ++
Sbjct: 283 IGEQMVQNAEDV 294
Score = 39.7 bits (91), Expect = 7e-04
Identities = 28/85 (32%), Positives = 46/85 (53%), Gaps = 5/85 (5%)
Query: 339 KKETISAQNGAQGQLNGLQVEDLTQETKRSMRLSD----DVQ-GVLVSQVNENSPAEQAG 393
KK + S +G+Q + G+ + L+ ++L + DVQ GVL+ +V SPA +AG
Sbjct: 214 KKNSSSGISGSQRRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAG 273
Query: 394 FRQGNIITKIEEVEVKSVADFNHAL 418
R G++I I E V++ D A+
Sbjct: 274 LRPGDVILAIGEQMVQNAEDVYEAV 298
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
Length = 242
Score = 49.7 bits (117), Expect = 7e-07
Identities = 50/190 (26%), Positives = 82/190 (42%), Gaps = 34/190 (17%)
Query: 69 SGVIISKDGYIVTNNHVIDGA--DKIKVTI-PGSNKEYSATLVGTDSES----------- 114
+GV+I K+ ++TN H+ A D KV+ P N + + E
Sbjct: 58 TGVLIGKNT-VLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFG 116
Query: 115 ---DLAVIRITKDN--------LPTIKFSDSNDISVGDLVFAIGNPFGVGESVTQGIVSA 163
DLA+IR+ D + K SND+ GD + IG PF V+
Sbjct: 117 AGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPF-------DHKVNQ 169
Query: 164 LNKSGIGINSYENFIQTDASINPGNSGGALIDSRGGLVGINTAIISKTGGNHGIGFAIP- 222
+++S I + + ++ PGNSG + +S G LVGI+++ +S H I + +
Sbjct: 170 MHRSEIELTTLSRGLRYYGFTVPGNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVGI 229
Query: 223 SNMVKDTVTQ 232
N VK + +
Sbjct: 230 GNYVKRIINE 239
>pdb|1QTF|A Chain A, Crystal Structure Of Exfoliative Toxin B
Length = 246
Score = 36.6 bits (83), Expect = 0.006
Identities = 49/182 (26%), Positives = 72/182 (38%), Gaps = 43/182 (23%)
Query: 67 LGSGVIISKDGYIVTNNHVIDGADKIKVTI---PGSNKEYSATLVGTD---------SES 114
L +GV+I K+ IVTN HV A K I P N++ T ES
Sbjct: 49 LATGVLIGKNT-IVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKES 107
Query: 115 ------DLAVIRITK--------DNLPTIKFSDSNDISVGDLVFAIGNPFGVGE-SVTQG 159
DLA+I++ D + D DI+ GD +G P+ S+ Q
Sbjct: 108 PYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAYSLYQS 167
Query: 160 IVSALNKSGIGINSYENFIQTDASINPGNSGGALIDSRGGLVGINTAIISKTGGNHGIGF 219
+ N S + F T+ GNSG + + +G L+GI+ S GG H +
Sbjct: 168 QIEMFNDS-------QYFGYTEV----GNSGSGIFNLKGELIGIH----SGKGGQHNLPI 212
Query: 220 AI 221
+
Sbjct: 213 GV 214
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 35.8 bits (81), Expect = 0.010
Identities = 23/58 (39%), Positives = 32/58 (54%), Gaps = 6/58 (10%)
Query: 239 IERGYLGVGLQDLSGDLQNSYDNKEGAVVISVEKDSPAKKAGILVWDLITEVNGKKVK 296
+E+G G G L G+ K G + VE SPA+KAG+L D + EVNG+ V+
Sbjct: 9 LEKGPNGYGFH-LHGE-----KGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVE 60
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 35.8 bits (81), Expect = 0.010
Identities = 23/58 (39%), Positives = 32/58 (54%), Gaps = 6/58 (10%)
Query: 239 IERGYLGVGLQDLSGDLQNSYDNKEGAVVISVEKDSPAKKAGILVWDLITEVNGKKVK 296
+E+G G G L G+ K G + VE SPA+KAG+L D + EVNG+ V+
Sbjct: 8 LEKGPNGYGFH-LHGE-----KGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVE 59
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 35.8 bits (81), Expect = 0.010
Identities = 23/58 (39%), Positives = 32/58 (54%), Gaps = 6/58 (10%)
Query: 239 IERGYLGVGLQDLSGDLQNSYDNKEGAVVISVEKDSPAKKAGILVWDLITEVNGKKVK 296
+E+G G G L G+ K G + VE SPA+KAG+L D + EVNG+ V+
Sbjct: 9 LEKGPNGYGFH-LHGE-----KGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVE 60
>pdb|2SGP|E Chain E, Pro 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Streptomyces Griseus Proteinase B At Ph
6.5
Length = 185
Score = 33.5 bits (75), Expect = 0.049
Identities = 42/162 (25%), Positives = 60/162 (36%), Gaps = 27/162 (16%)
Query: 66 ALGSGVIISKDGYIVTNNHVIDGADKIKVTIPGSNKEYSATLVGTDSES-----DLAVIR 120
+LG V Y +T H DGA T +N + T++GT S S D ++R
Sbjct: 15 SLGFNVRSGSTYYFLTAGHCTDGA-----TTWWANSART-TVLGTTSGSSFPNNDYGIVR 68
Query: 121 ITKDNLPTIKFSDSNDIS------VGDLVFAIGNPFGVGESVTQGIVSALNKSGIGINSY 174
T +P DI+ VG V G+ G + + +N G +
Sbjct: 69 YTNTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTGTHSGSVTALNATVNYGGGDV--V 126
Query: 175 ENFIQTDASINPGNSGGALIDSRGGLVGINTAIISKTGGNHG 216
I+T+ PG+SGG L T I T G G
Sbjct: 127 YGMIRTNVCAEPGDSGGPLYS--------GTRAIGLTSGGSG 160
>pdb|1SGP|E Chain E, Ala 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Streptomyces Griseus Proteinase B
pdb|1CT4|E Chain E, Crystal Structure Of The Omtky3 P1 Variant Omtky3-Val18i
In Complex With Sgpb
pdb|1CT2|E Chain E, Crystal Structure Of The Omtky3 P1 Variant Omtky3-Thr18i
In Complex With Sgpb
pdb|1DS2|E Chain E, Crystal Structure Of Sgpb:omtky3-Coo-Leu18i
pdb|1SGR|E Chain E, Leu 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Streptomyces Griseus Proteinase B
pdb|1CT0|E Chain E, Crystal Structure Of The Omtky3 P1 Variant Omtky3-Ser18i
In Complex With Sgpb
pdb|3SGB|E Chain E, Proteinase B From Streptomyces Griseus (SGPB) (E.C. Number
Not Assigned) Complex With Third Domain Of The Turkey
Ovomucoid Inhibitor (OMTKY3)
pdb|1SGQ|E Chain E, Gly 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Streptomyces Griseus Proteinase B
pdb|1CSO|E Chain E, Crystal Structure Of The Omtky3 P1 Variant Omtky3-Ile18i
In Complex With Sgpb
pdb|4SGB|E Chain E, Serine Proteinase B Complex With The Potato Inhibitor
PCI-1
Length = 185
Score = 33.5 bits (75), Expect = 0.049
Identities = 42/162 (25%), Positives = 60/162 (36%), Gaps = 27/162 (16%)
Query: 66 ALGSGVIISKDGYIVTNNHVIDGADKIKVTIPGSNKEYSATLVGTDSES-----DLAVIR 120
+LG V Y +T H DGA T +N + T++GT S S D ++R
Sbjct: 15 SLGFNVRSGSTYYFLTAGHCTDGA-----TTWWANSART-TVLGTTSGSSFPNNDYGIVR 68
Query: 121 ITKDNLPTIKFSDSNDIS------VGDLVFAIGNPFGVGESVTQGIVSALNKSGIGINSY 174
T +P DI+ VG V G+ G + + +N G +
Sbjct: 69 YTNTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTGTHSGSVTALNATVNYGGGDV--V 126
Query: 175 ENFIQTDASINPGNSGGALIDSRGGLVGINTAIISKTGGNHG 216
I+T+ PG+SGG L T I T G G
Sbjct: 127 YGMIRTNVCAEPGDSGGPLYS--------GTRAIGLTSGGSG 160
>pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 32.0 bits (71), Expect = 0.14
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 233 LIKTGKIERGYLGVGLQDLSGDLQNSYDNKEGAVVIS-VEKDSPAKKAGIL-VWDLITEV 290
L KTGK G+ + G++++S + K + I + DSPA G L V D I +
Sbjct: 11 LDKTGK-----KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
Query: 291 NGKKVKNTNE 300
NGK V+N+ E
Sbjct: 66 NGKDVRNSTE 75
>pdb|2SFA| Serine Proteinase From Streptomyces Fradiae Atcc 14544
Length = 191
Score = 30.4 bits (67), Expect = 0.42
Identities = 20/55 (36%), Positives = 27/55 (48%), Gaps = 2/55 (3%)
Query: 139 VGDLVFAIGNPFGVGESVTQGIVSALNKSGIGINSYENFIQTDASINPGNSGGAL 193
VG V G+ G+ G+ + +N G I S IQT+ PG+SGGAL
Sbjct: 99 VGQTVQRSGSTTGLHSGRVTGLNATVNYGGGDIVS--GLIQTNVCAEPGDSGGAL 151
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 30.0 bits (66), Expect = 0.54
Identities = 20/77 (25%), Positives = 35/77 (44%), Gaps = 2/77 (2%)
Query: 225 MVKDTVTQLIKTGKIERGYLGVGLQDLSGDLQNSYDNKEG--AVVISVEKDSPAKKAGIL 282
++ D T+ ++ ++ G L+ +YD G VV++ PA+KAG
Sbjct: 59 VLDDPFTRFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGAR 118
Query: 283 VWDLITEVNGKKVKNTN 299
D+I V+G VK +
Sbjct: 119 AGDVIVTVDGTAVKGXS 135
>pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 29.6 bits (65), Expect = 0.71
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 225 MVKDTVTQLIKTGKIERGYLGVGLQDLSGDLQNSYDNKEG--AVVISVEKDSPAKKAGIL 282
++ D T+ ++ ++ G L+ +YD G VV++ PA+KAG
Sbjct: 59 VLDDPFTRFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGAR 118
Query: 283 VWDLITEVNGKKVK 296
D+I V+G VK
Sbjct: 119 AGDVIVTVDGTAVK 132
Score = 26.2 bits (56), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (56%)
Query: 378 VLVSQVNENSPAEQAGFRQGNIITKIEEVEVKSVA 412
V+V PAE+AG R G++I ++ VK ++
Sbjct: 101 VVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGLS 135
>pdb|2SGA| Proteinase A (Component Of The Extracellular Filtrate Pronase)
(SGPA) (E.C. Number Not Assigned)
pdb|3SGA|E Chain E, Proteinase A (Component Of The Extracellular Filtrate
Pronase) (SGPA) (E.C. Number Not Assigned) Complexed
With Tetrapeptide Ace-Pro-Ala-Pro-Phe-Aldehyde
pdb|4SGA|E Chain E, Proteinase A (Component Of The Extracellular Filtrate
Pronase) (SGPA) (E.C. Number Not Assigned) Complexed
With Tetrapeptide Ace-Pro-Ala-Pro-Phe
pdb|5SGA|E Chain E, Proteinase A (Component Of The Extracellular Filtrate
Pronase) (SGPA) (E.C. Number Not Assigned) Complexed
With Tetrapeptide Ace-Pro-Ala-Pro-Tyr
pdb|1SGC| Proteinase A Complex With Chymostatin
Length = 181
Score = 29.3 bits (64), Expect = 0.93
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 2/55 (3%)
Query: 139 VGDLVFAIGNPFGVGESVTQGIVSALNKSGIGINSYENFIQTDASINPGNSGGAL 193
VG V G+ G+ G+ + +N GI IQT+ PG+SGG+L
Sbjct: 89 VGQAVQRSGSTTGLRSGSVTGLNATVNYGSSGI--VYGMIQTNVCAQPGDSGGSL 141
>pdb|1FEP|A Chain A, Ferric Enterobactin Receptor
Length = 724
Score = 28.9 bits (63), Expect = 1.2
Identities = 50/202 (24%), Positives = 83/202 (40%), Gaps = 12/202 (5%)
Query: 146 IGNPFGVGESVTQGIVSALN-KSGIGINSYE--NFIQTDASINPGNSGGALIDSRGG--L 200
+GN + +++QG+ K GI +Y+ + QT+ + + G S GG L
Sbjct: 438 VGNNWSPALNISQGLGDDFTLKXGIA-RAYKAPSLYQTNPNYILYSKGQGCYASAGGCYL 496
Query: 201 VGINTAIISKTGGNHGIGFAIPSNMVKDTVTQLIKT--GKIERGYLGVGLQDLSGDLQNS 258
G N + ++T N IG + VT KIE GY+ VG + DL
Sbjct: 497 QG-NDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVGQNAVGTDLY-Q 554
Query: 259 YDNKEGAVVISVEKDSPAKKAGILVW-DLITEVNGKKVKNTNELRNLIGSMLPNQRVTLK 317
+DN AVV +E + + W + IT + K T + ++I N ++ +
Sbjct: 555 WDNVPKAVVEGLEGSLNVPVSETVXWTNNITYXLKSENKTTGDRLSIIPEYTLNSTLSWQ 614
Query: 318 VIRDKKERAFTLTLAERKNPNK 339
D + T T ++ P K
Sbjct: 615 AREDLSXQT-TFTWYGKQQPKK 635
>pdb|1HU4|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase
20beta-Hydroxysteroid Dehydrogenase
Length = 288
Score = 28.9 bits (63), Expect = 1.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 204 NTAIISKTGGNHGIGFAIPSNMVKDTVTQLIKTGK-IERGYLGV 246
NT + TG N GIGFAI ++ + ++ T + + RG V
Sbjct: 3 NTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAV 46
>pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 28.5 bits (62), Expect = 1.6
Identities = 23/75 (30%), Positives = 31/75 (40%), Gaps = 9/75 (12%)
Query: 160 IVSALNKSGIGINS-----YENFIQTDASINPGNSGGALIDSRGGLVGINTAIISKTGGN 214
IV L K GI + ++ T +++ G +L D RGG I S TG
Sbjct: 174 IVHVLTKENFGIETGLMTTIHSYTATQKTVD----GVSLKDWRGGRAAAVNIIPSTTGAA 229
Query: 215 HGIGFAIPSNMVKDT 229
+G IPS K T
Sbjct: 230 KAVGMVIPSTKGKLT 244
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
Length = 359
Score = 28.5 bits (62), Expect = 1.6
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 160 IVSALNKSGIGINS-----YENFIQTDASINPGNSGGALIDSRGGLVGINTAIISKTGGN 214
IV L K G G+ + ++ T +++ G ++ D RGG I S TG
Sbjct: 174 IVHVLVKEGFGVQTGLMTTIHSYTATQKTVD----GVSVKDWRGGRAAAVNIIPSTTGAA 229
Query: 215 HGIGFAIPSNMVKDT 229
+G IPS K T
Sbjct: 230 KAVGMVIPSTQGKLT 244
>pdb|1GYP|A Chain A, Mol_id: 1; Molecule: Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: A, B, C, D; Synonym: Gapdh; Ec:
1.2.1.12; Engineered: Yes; Heterogen: Nad; Heterogen:
Phosphate
pdb|1GYP|B Chain B, Mol_id: 1; Molecule: Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: A, B, C, D; Synonym: Gapdh; Ec:
1.2.1.12; Engineered: Yes; Heterogen: Nad; Heterogen:
Phosphate
pdb|1GYP|C Chain C, Mol_id: 1; Molecule: Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: A, B, C, D; Synonym: Gapdh; Ec:
1.2.1.12; Engineered: Yes; Heterogen: Nad; Heterogen:
Phosphate
pdb|1GYP|D Chain D, Mol_id: 1; Molecule: Glyceraldehyde-3-Phosphate
Dehydrogenase; Chain: A, B, C, D; Synonym: Gapdh; Ec:
1.2.1.12; Engineered: Yes; Heterogen: Nad; Heterogen:
Phosphate
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 28.5 bits (62), Expect = 1.6
Identities = 23/75 (30%), Positives = 31/75 (40%), Gaps = 9/75 (12%)
Query: 160 IVSALNKSGIGINS-----YENFIQTDASINPGNSGGALIDSRGGLVGINTAIISKTGGN 214
IV L K GI + ++ T +++ G +L D RGG I S TG
Sbjct: 174 IVHVLTKENFGIETGLMTTIHSYTATQKTVD----GVSLKDWRGGRAAAVNIIPSTTGAA 229
Query: 215 HGIGFAIPSNMVKDT 229
+G IPS K T
Sbjct: 230 KAVGMVIPSTKGKLT 244
>pdb|1GGA|A Chain A, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|B Chain B, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|O Chain O, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|P Chain P, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|Q Chain Q, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
pdb|1GGA|R Chain R, D-Glyceraldehyde-3-Phosphate Dehydrogenase (Holo Form)
(E.C.1.2.1.12)
Length = 358
Score = 28.5 bits (62), Expect = 1.6
Identities = 22/75 (29%), Positives = 33/75 (43%), Gaps = 9/75 (12%)
Query: 160 IVSALNKSGIGINS-----YENFIQTDASINPGNSGGALIDSRGGLVGINTAIISKTGGN 214
+V L K G GI++ ++ T +++ G ++ D RGG I S TG
Sbjct: 173 LVHVLVKEGFGISTGLMTTVHSYTATQKTVD----GVSVKDWRGGRAAALNIIPSTTGAA 228
Query: 215 HGIGFAIPSNMVKDT 229
+G IPS K T
Sbjct: 229 KAVGMVIPSTQGKLT 243
>pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From
Hyperthermophilic Archaeon, Thermococcus Kodakaraensis
Kod1
Length = 213
Score = 28.1 bits (61), Expect = 2.1
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 352 QLNGLQVEDLTQET-KRSMRLSDDVQGVLVSQVNENSPAEQAGFRQGNIITKIEEVEVKS 410
+L L+V D + T KR +L +++ GVL V P + G R+G + E EV+
Sbjct: 32 KLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGT----LNEFEVE- 86
Query: 411 VADFNHALEKYKGKP 425
+F AL K KP
Sbjct: 87 --NFAKALNSLKVKP 99
>pdb|1BEF|A Chain A, Crystal Structure Of Dengue Virus Ns3 Serine Protease
Length = 181
Score = 27.7 bits (60), Expect = 2.7
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 185 NPGNSGGALIDSRGGLVGI-NTAIISKTG 212
+PG SG +ID +G +VGI +++++G
Sbjct: 131 SPGTSGSPIIDKKGKVVGIYGNGVVTRSG 159
>pdb|1DF9|A Chain A, Dengue Virus Ns3-Protease Complexed With Mung-Bean Bowman-
Birk Inhibitor
pdb|1DF9|B Chain B, Dengue Virus Ns3-Protease Complexed With Mung-Bean Bowman-
Birk Inhibitor
Length = 191
Score = 27.7 bits (60), Expect = 2.7
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 185 NPGNSGGALIDSRGGLVGI-NTAIISKTG 212
+PG SG +ID +G +VGI +++++G
Sbjct: 137 SPGTSGSPIIDKKGKVVGIYGNGVVTRSG 165
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 27.3 bits (59), Expect = 3.5
Identities = 37/143 (25%), Positives = 62/143 (42%), Gaps = 22/143 (15%)
Query: 283 VWDLITEV--NGKKVKNTNELRNLIGSMLPNQRVTLKVIRDKKERAFTLTLAERKNPNKK 340
V DL T + +K KN +L+N SM+ V LK +++K R L +RK +
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK--KEEKSRQ-ELEKIKRKLEGES 1069
Query: 341 ETISAQNG-AQGQLNGLQVEDLTQETKRSMRLSDDVQGVLVSQVNENSPAEQAGFRQGNI 399
+ Q Q Q+ L+ + +E +++Q L +E S ++ N
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKE--------EELQAALARLEDETS-------QKNNA 1114
Query: 400 ITKIEEVEVKSVADFNHALEKYK 422
+ KI E+E ++D LE K
Sbjct: 1115 LKKIRELE-SHISDLQEDLESEK 1136
>pdb|1EFP|A Chain A, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
pdb|1EFP|C Chain C, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
Length = 307
Score = 26.6 bits (57), Expect = 6.0
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 189 SGGALIDSRGGLVGINTAIISKTGGNHGIGFAIPSNMVKDTVTQLIKTGKIERGYLGVGL 248
SGG + S+ I + K G G A + Q+ +TGK+ L V +
Sbjct: 197 SGGRGLGSKESFAIIEE-LADKLGAAVGASRAAVDSGYAPNDWQVGQTGKVVAPELYVAV 255
Query: 249 QDLSGDLQNSYDNKEGAVVISVEKDSPAKKAGI----LVWDL---ITEVNGK 293
+SG +Q+ K+ V++++ KD A I LV DL + E+ GK
Sbjct: 256 -GISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGK 306
>pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1119
Score = 26.2 bits (56), Expect = 7.9
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 310 PNQRVTLKVIRDKKERAFTLTLAERKNPNKKETISAQNGAQGQLNGLQVEDLTQETKRSM 369
PN V++KV +R F L L R +ET++ + GA G+L V+ L E+ +M
Sbjct: 178 PNGVVSMKV----NKRKFPLVLLLRVLGYDQETLARELGAYGEL----VQGLMDESVFAM 229
Query: 370 R 370
R
Sbjct: 230 R 230
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 26.2 bits (56), Expect = 7.9
Identities = 27/95 (28%), Positives = 38/95 (39%), Gaps = 1/95 (1%)
Query: 44 DPFFQQFFG-DLGGMIPKERMERALGSGVIISKDGYIVTNNHVIDGADKIKVTIPGSNKE 102
DP FFG DL G+I LG I + +NH D AD ++ +KE
Sbjct: 164 DPTPTSFFGGDLQGIIDHLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKE 223
Query: 103 YSATLVGTDSESDLAVIRITKDNLPTIKFSDSNDI 137
TLV E + V+ N +F+ D+
Sbjct: 224 TLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDV 258
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 26.2 bits (56), Expect = 7.9
Identities = 27/95 (28%), Positives = 38/95 (39%), Gaps = 1/95 (1%)
Query: 44 DPFFQQFFG-DLGGMIPKERMERALGSGVIISKDGYIVTNNHVIDGADKIKVTIPGSNKE 102
DP FFG DL G+I LG I + +NH D AD ++ +KE
Sbjct: 164 DPTPTSFFGGDLQGIIDHLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKE 223
Query: 103 YSATLVGTDSESDLAVIRITKDNLPTIKFSDSNDI 137
TLV E + V+ N +F+ D+
Sbjct: 224 TLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDV 258
>pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Nicotinamide-Adenine-Dinucleotide (Nad+)
Length = 458
Score = 26.2 bits (56), Expect = 7.9
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 178 IQTDASINPGNSGGALIDSRGGLVGINTAII--SKTGGNHGIGFAIPSNMVKDTVTQLIK 235
IQT I G GG + R G +GI T ++ GG IPS + Q +
Sbjct: 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQ 63
Query: 236 TGKI-ERGYLGVGLQDLSGDLQNSYDNKEGAV-VISVEKDSPAKKAGILV---WDLI--- 287
+ E LG+ + D+ S K+G V ++ + KK G+ V W +
Sbjct: 64 ASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDG 123
Query: 288 --TEVNGKKVK 296
EV+G++++
Sbjct: 124 KQVEVDGQRIQ 134
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 26.2 bits (56), Expect = 7.9
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 61 ERMERALGSGVIISKDGYIVTNNHVIDGADKIKVTIPGSNKEYSATLVGTDSESDLAVIR 120
E +ER G G + +VT+ + D AD + V + + +A L GT +I+
Sbjct: 212 ETVERYEGDGRVQK----VVTDKNAYD-ADLVVVAV--GVRPNTAWLKGTLELHPNGLIK 264
Query: 121 ITKDNLPTIKFSDSNDISVGDLVFAIGNPFGVGESVTQGIVSALNKSGIGINSYENFIQT 180
+ ++ S+ + +VGD NP ++ +A+ + + + E ++
Sbjct: 265 TDE----YMRTSEPDVFAVGDATLIKYNPADTEVNIALA-TNAMKQGRFAVKNLEEPVKP 319
Query: 181 DASINPGNSGGALIDSRGGLVGINTAIISKTG 212
+ G+SG A+ D + GIN + K G
Sbjct: 320 FPGVQ-GSSGLAVFDYKFASTGINEVMAQKLG 350
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.135 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,583,349
Number of Sequences: 13198
Number of extensions: 114042
Number of successful extensions: 272
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 36
length of query: 443
length of database: 2,899,336
effective HSP length: 91
effective length of query: 352
effective length of database: 1,698,318
effective search space: 597807936
effective search space used: 597807936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)