BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645634|ref|NP_207810.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(406 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JN1|A Chain A, Structure Of 2c-Methyl-D-Erythritol 2,4... 135 8e-33
pdb|1KNK|A Chain A, Crystal Structure Of 2-C-Methyl-D-Eryth... 133 4e-32
pdb|1KNJ|A Chain A, Co-Crystal Structure Of 2-C-Methyl-D-Er... 131 1e-31
pdb|1GX1|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4... 131 1e-31
pdb|1IV1|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4... 97 4e-21
pdb|1IV2|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4... 94 2e-20
pdb|1INI|A Chain A, Crystal Structure Of 4-Diphosphocytidyl... 47 4e-06
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric ... 27 5.4
pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dn... 27 5.4
pdb|1TND|A Chain A, Transducin (Alpha Subunit) Complexed Wi... 27 5.4
pdb|1QDB|A Chain A, Cytochrome C Nitrite Reductase >gi|5822... 26 7.1
pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-... 26 7.1
>pdb|1JN1|A Chain A, Structure Of 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate
Synthase From Haemophilus Influenzae (Hi0671)
pdb|1JN1|B Chain B, Structure Of 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate
Synthase From Haemophilus Influenzae (Hi0671)
pdb|1JN1|C Chain C, Structure Of 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate
Synthase From Haemophilus Influenzae (Hi0671)
Length = 158
Score = 135 bits (340), Expect = 8e-33
Identities = 67/148 (45%), Positives = 98/148 (65%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF +D+P+++GGV + G AHSDGD LHA+ DAILGA GDIG+ FP
Sbjct: 4 IGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D D +YKNA S+ LL+ Q G+++ + TI ++ PK+ P+ A+ +++ L
Sbjct: 64 DTDMQYKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQC 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
+ Q+++KATT EK+GF G+QEG+ +A
Sbjct: 124 DIEQVNVKATTTEKLGFTGRQEGIACEA 151
>pdb|1KNK|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase (Ispf) From E. Coli Involved
In Mevalonate-Independent Isoprenoid Biosynthesis
pdb|1JY8|A Chain A, 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase
(Ispf)
Length = 159
Score = 133 bits (334), Expect = 4e-32
Identities = 67/148 (45%), Positives = 96/148 (64%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF + P+++GGV + E GL AHSDGD LHA+ DA+LGA GDIG+ FP
Sbjct: 3 IGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP +K A S+ELL+ Q+ G+ L + TI ++ PK+ P+ P + +++ LG
Sbjct: 63 DTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGC 122
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
+++KATT EK+GF G+ EG+ +A
Sbjct: 123 HMDDVNVKATTTEKLGFTGRGEGIACEA 150
>pdb|1KNJ|A Chain A, Co-Crystal Structure Of 2-C-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase (Ispf) From E. Coli Involved
In Mevalonate-Independent Isoprenoid Biosynthesis,
Complexed With CmpMECDPMN2+
Length = 159
Score = 131 bits (330), Expect = 1e-31
Identities = 67/148 (45%), Positives = 94/148 (63%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF + P+++GGV + E GL AHSDGD LHA+ DA+LGA GDIG+ FP
Sbjct: 3 IGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP +K A S+ELL+ Q+ G+ L + TI ++ PK P+ P +++ LG
Sbjct: 63 DTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKXLPHIPQXRVFIAEDLGC 122
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
+++KATT EK+GF G+ EG+ +A
Sbjct: 123 HXDDVNVKATTTEKLGFTGRGEGIACEA 150
>pdb|1GX1|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1GX1|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1GX1|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
Length = 160
Score = 131 bits (330), Expect = 1e-31
Identities = 67/148 (45%), Positives = 94/148 (63%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG GFD HAF + P+++GGV + E GL AHSDGD LHA+ DA+LGA GDIG+ FP
Sbjct: 4 IGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFP 63
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP +K A S+ELL+ Q+ G+ L + TI ++ PK P+ P +++ LG
Sbjct: 64 DTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKXLPHIPQXRVFIAEDLGC 123
Query: 369 EKSQISLKATTMEKMGFIGKQEGLLVQA 396
+++KATT EK+GF G+ EG+ +A
Sbjct: 124 HXDDVNVKATTTEKLGFTGRGEGIACEA 151
>pdb|1IV1|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
Length = 152
Score = 96.7 bits (239), Expect = 4e-21
Identities = 50/133 (37%), Positives = 80/133 (59%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G D+H + +P+ L G+++ G AHSDGDA LHA+ DA+L A GDIG FP
Sbjct: 3 IGYGEDSHRLEEGRPLYLCGLLIPSPVGALAHSDGDAALHALTDALLSAYGLGDIGLLFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP+++ S+ L+ L ++ G +L + + + PK+ P++ A++++LS+LL L
Sbjct: 63 DTDPRWRGERSEVFLREALRLVEARGAKLLQASLVLTLDRPKLGPHRKALVDSLSRLLRL 122
Query: 369 EKSQISLKATTME 381
+ +I L T E
Sbjct: 123 PQDRIGLTFKTSE 135
>pdb|1IV2|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV3|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV4|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
Length = 152
Score = 94.4 bits (233), Expect = 2e-20
Identities = 47/133 (35%), Positives = 80/133 (59%)
Query: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFP 308
IG G D+H + +P+ L G+++ G AHSDGDA +HA+ DA+L A GDIG FP
Sbjct: 3 IGYGEDSHRLEEGRPLYLCGLLIPSPVGALAHSDGDAAMHALTDALLSAYGLGDIGLLFP 62
Query: 309 DNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGL 368
D DP+++ S+ L+ + ++ G +L + + + PK+ P++ A++++LS+L+ L
Sbjct: 63 DTDPRWRGERSEVFLREAMRLVEARGAKLLQASLVLTLDRPKLGPHRKALVDSLSRLMRL 122
Query: 369 EKSQISLKATTME 381
+ +I L T E
Sbjct: 123 PQDRIGLTFKTSE 135
>pdb|1INI|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2-C-
Methylerythritol (Cdp-Me) Synthetase (Ygbp) Involved In
Mevalonate Independent Isoprenoid Biosynthesis,
Complexed With Cdp-Me And Mg2+
pdb|1I52|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2-C-
Methylerythritol (Cdp-Me) Synthase (Ygbp) Involved In
Mevalonate Independent Isoprenoid Biosynthesis
pdb|1INJ|A Chain A, Crystal Structure Of The Apo Form Of
4-Diphosphocytidyl-2-C- Methylerythritol (Cdp-Me)
Synthetase (Ygbp) Involved In Mevalonate Independent
Isoprenoid Biosynthesis
Length = 236
Score = 47.0 bits (110), Expect = 4e-06
Identities = 61/214 (28%), Positives = 91/214 (42%), Gaps = 22/214 (10%)
Query: 39 VLLAAGESRRFSQTIKKQWLR-SNHTPLWLSVYESFKEALDFKEIILVVSELDYIYIK-- 95
V+ AAG RR KQ+L N T L SV+ K +++ +S D + +
Sbjct: 11 VVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPR-VKRVVIAISPGDSRFAQLP 69
Query: 96 -RHYPEIKLVKGGASRQESVRNALKII-DSAYTLTSDVARGLANIEALKNLFLTLQQTSH 153
++P+I +V GG R +SV LK D+ + L D AR + + L L L L +TS
Sbjct: 70 LANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARL-LALSETSR 128
Query: 154 YCIAPYLPCYDT---------AIYYNEALDREAIKLIQTPQLSHTKALQS----ALNQGD 200
P DT AI + +DR + TPQ + L ALN+G
Sbjct: 129 TGGILAAPVRDTMKRAEPGKNAIAH--TVDRNGLWHALTPQFFPRELLHDCLTRALNEGA 186
Query: 201 FKDESSAILQAFPDRVSYIEGSKDLHKLTTSGDL 234
+ ++ L+ +EG D K+T DL
Sbjct: 187 TITDEASALEYCGFHPQLVEGRADNIKVTRPEDL 220
>pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(RGS9) (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(RGS9) (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 26.6 bits (57), Expect = 5.4
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 34 KQTSVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIY 93
+ ++LL AGES + TI KQ ++ H + S +E L+F II + +
Sbjct: 3 RTVKLLLLGAGESGK--STIVKQ-MKIIHQDGY-----SLEECLEFIAIIYGNTLQSILA 54
Query: 94 IKRHYPEIKLVKGGASRQESVRNALKIIDSAYTLT-----SDVARGLANIEALKNLFLTL 148
I R + + G ++RQ+ R + + D+ T SD+ + L ++ F
Sbjct: 55 IVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACF--- 111
Query: 149 QQTSHYCIAPYLPCYDTAIYYNEALDR 175
+ S Y + D+A YY L+R
Sbjct: 112 DRASEYQL------NDSAGYYLSDLER 132
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 26.6 bits (57), Expect = 5.4
Identities = 21/111 (18%), Positives = 47/111 (41%), Gaps = 13/111 (11%)
Query: 26 KETLETLIKQTSVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILV 85
+ T+E+ K V L G + + K LR+ + + + +E + FK + LV
Sbjct: 435 RRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLV 494
Query: 86 VSELDYIYIKRHYPEIKLVKGGASRQESVRNALKIIDSAYTLTSDVARGLA 136
+ + + + G ++E++ N K++D+ + + R +A
Sbjct: 495 IIDEQHRF-------------GVKQREALMNKGKMVDTLVMSATPIPRSMA 532
>pdb|1TND|A Chain A, Transducin (Alpha Subunit) Complexed With The
Nonhydrolyzable Gtp Analogue Gtp Gamma S
pdb|1TAD|C Chain C, Transducin-Alpha (Gt-Alpha-Gdp-Alf, T-Alpha-Gdp-Alf)
Complexed With Gdp And Aluminum Fluoride
pdb|1TAD|A Chain A, Transducin-Alpha (Gt-Alpha-Gdp-Alf, T-Alpha-Gdp-Alf)
Complexed With Gdp And Aluminum Fluoride
pdb|1TAD|B Chain B, Transducin-Alpha (Gt-Alpha-Gdp-Alf, T-Alpha-Gdp-Alf)
Complexed With Gdp And Aluminum Fluoride
pdb|1TND|B Chain B, Transducin (Alpha Subunit) Complexed With The
Nonhydrolyzable Gtp Analogue Gtp Gamma S
pdb|1TND|C Chain C, Transducin (Alpha Subunit) Complexed With The
Nonhydrolyzable Gtp Analogue Gtp Gamma S
pdb|1TAG| Transducin-Alpha Complexed With Gdp And Magnesium (Gt-Alpha-Gdp,
T-Alpha-Gdp)
Length = 324
Score = 26.6 bits (57), Expect = 5.4
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 34 KQTSVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILVVSELDYIY 93
+ ++LL AGES + TI KQ ++ H + S +E L+F II + +
Sbjct: 2 RTVKLLLLGAGESGK--STIVKQ-MKIIHQDGY-----SLEECLEFIAIIYGNTLQSILA 53
Query: 94 IKRHYPEIKLVKGGASRQESVRNALKIIDSAYTLT-----SDVARGLANIEALKNLFLTL 148
I R + + G ++RQ+ R + + D+ T SD+ + L ++ F
Sbjct: 54 IVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACF--- 110
Query: 149 QQTSHYCIAPYLPCYDTAIYYNEALDR 175
+ S Y + D+A YY L+R
Sbjct: 111 DRASEYQL------NDSAGYYLSDLER 131
>pdb|1QDB|A Chain A, Cytochrome C Nitrite Reductase
pdb|1QDB|B Chain B, Cytochrome C Nitrite Reductase
pdb|1QDB|C Chain C, Cytochrome C Nitrite Reductase
Length = 473
Score = 26.2 bits (56), Expect = 7.1
Identities = 12/35 (34%), Positives = 20/35 (56%), Gaps = 2/35 (5%)
Query: 23 FETKETLETLIKQTSVVLLAAGESRRFSQTIKKQW 57
F+TK+ + L K L A E +F QT++++W
Sbjct: 410 FDTKDKAQKLAKVDIAAL--AAEKMKFKQTLEQEW 442
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 26.2 bits (56), Expect = 7.1
Identities = 40/155 (25%), Positives = 64/155 (40%), Gaps = 22/155 (14%)
Query: 26 KETLETLIKQTSVVLLAAGESRRFSQTIKKQWLRSNHTPLWLSVYESFKEALDFKEIILV 85
KE E + ++LL AGES + TI KQ + H + S +E L+F II
Sbjct: 20 KEDAEKDARTVKLLLLGAGESGK--STIVKQ-XKIIHQDGY-----SLEECLEFIAIIYG 71
Query: 86 VSELDYIYIKRHYPEIKLVKGGASRQESVRNALKIIDSAYTLT-----SDVARGLANIEA 140
+ + I R + + G ++RQ+ R D+ T SD+ + L
Sbjct: 72 NTLQSILAIVRAXTTLNIQYGDSARQDDARKLXHXADTIEEGTXPKEXSDIIQRLWKDSG 131
Query: 141 LKNLFLTLQQTSHYCIAPYLPCYDTAIYYNEALDR 175
++ F + S Y + D+A YY L+R
Sbjct: 132 IQACF---DRASEYQL------NDSAGYYLSDLER 157
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,209,653
Number of Sequences: 13198
Number of extensions: 90486
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 12
length of query: 406
length of database: 2,899,336
effective HSP length: 90
effective length of query: 316
effective length of database: 1,711,516
effective search space: 540839056
effective search space used: 540839056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)