BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645637|ref|NP_207813.1| hypothetical protein
[Helicobacter pylori 26695]
(416 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BSX|A Chain A, Structure And Specificity Of Nuclear Re... 32 0.17
pdb|1AUA| Phosphatidylinositol Transfer Protein Sec14p Fr... 30 0.50
pdb|1OBT| Structure Of Ricin A Chain Mutant, Complex With... 28 1.9
pdb|1BR6|A Chain A, Ricin A Chain (Recombinant) Complex Wit... 28 1.9
pdb|2AAI|A Chain A, Ricin (E.C.3.2.2.22) >gi|3660105|pdb|1B... 28 1.9
pdb|1IFT| Ricin A-Chain (Recombinant) >gi|2914587|pdb|1IF... 28 1.9
pdb|1LC5|A Chain A, Crystal Structure Of L-Threonine-O-3-Ph... 27 3.3
pdb|1GFM| Ompf Porin (Mutant D113g) 27 4.3
pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught ... 27 5.6
pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphat... 27 5.6
pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphat... 27 5.6
pdb|1A80| Native 2,5-Diketo-D-Gluconic Acid Reductase A F... 27 5.6
pdb|1HW6|A Chain A, Crystal Structure Of Apo-2,5-Diketo-D-G... 27 5.6
pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small S... 27 5.6
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Esc... 27 5.6
pdb|1A17| Tetratricopeptide Repeats Of Protein Phosphatase 5 27 5.6
pdb|1G0D|A Chain A, Crystal Structure Of Red Sea Bream Tran... 26 7.3
pdb|1I44|A Chain A, Crystallographic Studies Of An Activati... 26 7.3
pdb|1IRK| Insulin Receptor (Tyrosine Kinase Domain) Mutan... 26 7.3
pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosin... 26 7.3
>pdb|1BSX|A Chain A, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
pdb|1BSX|B Chain B, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
Length = 260
Score = 31.6 bits (70), Expect = 0.17
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 187 SLNALASYDPVSKRLYVGGEVFVLGAEYRHENLKVVPFILTDTRLPLSTQNV 238
SL A YDP S+ L + GE+ V + ++ L VV + D + LS+ N+
Sbjct: 113 SLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNL 164
>pdb|1AUA| Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces
Cerevisiae
Length = 296
Score = 30.0 bits (66), Expect = 0.50
Identities = 16/46 (34%), Positives = 25/46 (53%), Gaps = 11/46 (23%)
Query: 206 EVFVLGAEYRHENLKVVPFILTDTRLPLSTQNVLVQVGGKLEYDAS 251
++F+LG+ Y+ E LK +P +N+ V+ GGK E D S
Sbjct: 236 KIFILGSSYQKELLKQIP-----------AENLPVKFGGKSEVDES 270
>pdb|1OBT| Structure Of Ricin A Chain Mutant, Complex With Amp
pdb|1OBS| Structure Of Ricin A Chain Mutant
Length = 267
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 6/61 (9%)
Query: 211 GAEYRHENLKVVPFILTDTRLPLSTQNVLVQVGGKLEYDASLAKGFTSHTLVHGMYQYGN 270
GA+ RHE +P + LP++ + +LV++ E +LA T+ +V Y+ GN
Sbjct: 35 GADVRHE----IPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAYVVG--YRAGN 88
Query: 271 T 271
+
Sbjct: 89 S 89
>pdb|1BR6|A Chain A, Ricin A Chain (Recombinant) Complex With Pteroic Acid
pdb|1RTC| Ricin A Chain (E.C.3.2.2.22)
Length = 268
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 6/61 (9%)
Query: 211 GAEYRHENLKVVPFILTDTRLPLSTQNVLVQVGGKLEYDASLAKGFTSHTLVHGMYQYGN 270
GA+ RHE +P + LP++ + +LV++ E +LA T+ +V Y+ GN
Sbjct: 36 GADVRHE----IPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAYVVG--YRAGN 89
Query: 271 T 271
+
Sbjct: 90 S 90
>pdb|2AAI|A Chain A, Ricin (E.C.3.2.2.22)
pdb|1BR5|A Chain A, Ricin A Chain (Recombinant) Complex With Neopterin
pdb|1IL5|B Chain B, Structure Of Ricin A Chain Bound With Inhibitor
2,5-Diamino- 4,6-Dihydroxypyrimidine (Ddp)
pdb|1FMP| Ricin (E.C.3.2.2.22) Complex With Formycin-5'-Monophosphate
pdb|1APG|A Chain A, Ricin (A Chain) Complex With Adenyl(3'-->5')guanosine
(Apg)
pdb|1IL3|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor 7-
Deazaguanine
pdb|1IL9|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor
8-Methyl-9- Oxoguanine
pdb|1IL4|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor 9-
Deazaguanine
pdb|1IL5|A Chain A, Structure Of Ricin A Chain Bound With Inhibitor
2,5-Diamino- 4,6-Dihydroxypyrimidine (Ddp)
Length = 267
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 6/61 (9%)
Query: 211 GAEYRHENLKVVPFILTDTRLPLSTQNVLVQVGGKLEYDASLAKGFTSHTLVHGMYQYGN 270
GA+ RHE +P + LP++ + +LV++ E +LA T+ +V Y+ GN
Sbjct: 35 GADVRHE----IPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAYVVG--YRAGN 88
Query: 271 T 271
+
Sbjct: 89 S 89
>pdb|1IFT| Ricin A-Chain (Recombinant)
pdb|1IFS| Ricin A-Chain (Recombinant) Complex With Adenosine (Adenosine
Becomes Adenine In The Complex)
pdb|1IFU| Ricin A-Chain (Recombinant) Complex With Formycin
Length = 263
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 6/61 (9%)
Query: 211 GAEYRHENLKVVPFILTDTRLPLSTQNVLVQVGGKLEYDASLAKGFTSHTLVHGMYQYGN 270
GA+ RHE +P + LP++ + +LV++ E +LA T+ +V Y+ GN
Sbjct: 35 GADVRHE----IPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAYVVG--YRAGN 88
Query: 271 T 271
+
Sbjct: 89 S 89
>pdb|1LC5|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica In Its Apo State
pdb|1LC7|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With A
Substrate
pdb|1LC8|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With Its
Reaction Intermediate
pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Salmonella Enterica
Length = 364
Score = 27.3 bits (59), Expect = 3.3
Identities = 15/42 (35%), Positives = 20/42 (46%), Gaps = 6/42 (14%)
Query: 298 TGFYIVPARNNKGYLWTFNDRTKFYGRGINAPGVPAIYFANS 339
TGF +PA + ++W TKFY PG+ Y NS
Sbjct: 196 TGF--IPALKDNPHIWVLRSLTKFYA----IPGLRLGYLVNS 231
>pdb|1GFM| Ompf Porin (Mutant D113g)
Length = 340
Score = 26.9 bits (58), Expect = 4.3
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 43 NQGAQKNPHSYVGALARLGVDFSYSNGWSFGIGAIGAWNIYNKQRLANLYISLG---NFF 99
N G + Y G L G D +YS+ F +G +G Y L L +
Sbjct: 101 NYGVVYDALGYTGMLPEFGGDTAYSD--DFFVGRVGGVATYRNSNFFGLVDGLNFAVQYL 158
Query: 100 GSSKNVKPYLSAGDVSDAYVQYTNQRFKI 128
G ++ S GD + Y + F I
Sbjct: 159 GKNERDTARRSNGDGVGGSISYEYEGFGI 187
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 26.6 bits (57), Expect = 5.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 309 KGYLWTFNDRTKFYGRGINAPG--VPAIYFANSSISGY 344
K L D T+F+GR I A G V + F N+S++GY
Sbjct: 2 KSALLVLEDGTQFHGRAIGATGSAVGEVVF-NTSMTGY 38
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 26.6 bits (57), Expect = 5.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 309 KGYLWTFNDRTKFYGRGINAPG--VPAIYFANSSISGY 344
K L D T+F+GR I A G V + F N+S++GY
Sbjct: 3 KSALLVLEDGTQFHGRAIGATGSAVGEVVF-NTSMTGY 39
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 26.6 bits (57), Expect = 5.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 309 KGYLWTFNDRTKFYGRGINAPG--VPAIYFANSSISGY 344
K L D T+F+GR I A G V + F N+S++GY
Sbjct: 3 KSALLVLEDGTQFHGRAIGATGSAVGEVVF-NTSMTGY 39
>pdb|1A80| Native 2,5-Diketo-D-Gluconic Acid Reductase A From Corynbacterium
Sp. Complexed With Nadph
Length = 277
Score = 26.6 bits (57), Expect = 5.6
Identities = 17/55 (30%), Positives = 25/55 (44%)
Query: 138 VDFDWIGGNIQGVSVAFKQNSMRYFGIFMDSMLYNGHQINKEQGNRIATSLNALA 192
+D I GN +GV A + + +F+ + L+N E IA SL LA
Sbjct: 43 IDTAAIYGNEEGVGAAIAASGIARDDLFITTKLWNDRHDGDEPAAAIAESLAKLA 97
>pdb|1HW6|A Chain A, Crystal Structure Of Apo-2,5-Diketo-D-Gluconate Reductase
Length = 278
Score = 26.6 bits (57), Expect = 5.6
Identities = 17/55 (30%), Positives = 25/55 (44%)
Query: 138 VDFDWIGGNIQGVSVAFKQNSMRYFGIFMDSMLYNGHQINKEQGNRIATSLNALA 192
+D I GN +GV A + + +F+ + L+N E IA SL LA
Sbjct: 44 IDTAAIYGNEEGVGAAIAASGIARDDLFITTKLWNDRHDGDEPAAAIAESLAKLA 98
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 26.6 bits (57), Expect = 5.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 309 KGYLWTFNDRTKFYGRGINAPG--VPAIYFANSSISGY 344
K L D T+F+GR I A G V + F N+S++GY
Sbjct: 3 KSALLVLEDGTQFHGRAIGATGSAVGEVVF-NTSMTGY 39
>pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
Length = 382
Score = 26.6 bits (57), Expect = 5.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 309 KGYLWTFNDRTKFYGRGINAPG--VPAIYFANSSISGY 344
K L D T+F+GR I A G V + F N+S++GY
Sbjct: 3 KSALLVLEDGTQFHGRAIGATGSAVGEVVF-NTSMTGY 39
>pdb|1A17| Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 26.6 bits (57), Expect = 5.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 315 FNDRTKFYGRGINAPGVPAIYFANSSIS-------GYVFLGLKTKRVRLDAMVAFGDYQ 366
+ + KFY + I AIY+ N S++ GY LG T+ + LD G Y+
Sbjct: 29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA-LGDATRAIELDKKYIKGYYR 86
>pdb|1G0D|A Chain A, Crystal Structure Of Red Sea Bream Transglutaminase
Length = 695
Score = 26.2 bits (56), Expect = 7.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 225 ILTDTRLPLSTQNVLVQVGGK 245
I+T +PLST +LVQV GK
Sbjct: 574 IMTVANIPLSTPELLVQVPGK 594
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 26.2 bits (56), Expect = 7.3
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 228 DTRLPLSTQNVLVQVGGKLEY--DASLAKGFTSHTLV 262
+TR+ + T N + ++E+ +AS+ KGFT H +V
Sbjct: 47 ETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVV 83
>pdb|1IRK| Insulin Receptor (Tyrosine Kinase Domain) Mutant With Cys 981
Replaced By Ser And Tyr 984 Replaced By Phe (C981s,
Y984f)
Length = 306
Score = 26.2 bits (56), Expect = 7.3
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 228 DTRLPLSTQNVLVQVGGKLEY--DASLAKGFTSHTLV 262
+TR+ + T N + ++E+ +AS+ KGFT H +V
Sbjct: 47 ETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVV 83
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 26.2 bits (56), Expect = 7.3
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 228 DTRLPLSTQNVLVQVGGKLEY--DASLAKGFTSHTLV 262
+TR+ + T N + ++E+ +AS+ KGFT H +V
Sbjct: 47 ETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVV 83
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,548,681
Number of Sequences: 13198
Number of extensions: 113800
Number of successful extensions: 274
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 22
length of query: 416
length of database: 2,899,336
effective HSP length: 91
effective length of query: 325
effective length of database: 1,698,318
effective search space: 551953350
effective search space used: 551953350
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)