BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645639|ref|NP_207815.1| putative heat shock protein
(hspR) [Helicobacter pylori 26695]
(123 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JBG|A Chain A, Crystal Structure Of Mtan, The Bacillus... 41 4e-05
pdb|1CXZ|B Chain B, Crystal Structure Of Human Rhoa Complex... 28 0.30
pdb|1LFA|A Chain A, Cd11a I-Domain With Bound Mn++ >gi|1942... 28 0.39
pdb|1MPY|A Chain A, Structure Of Catechol 2,3-Dioxygenase (... 28 0.39
pdb|1EMY| Myoglobin Complexed With Cyanide 27 0.51
pdb|1CQP|A Chain A, Crystal Structure Analysis Of The Compl... 26 1.5
pdb|1DGQ|A Chain A, Nmr Solution Structure Of The Inserted ... 26 1.5
pdb|1KCW| X-Ray Crystal Structure Of Human Ceruloplasmin ... 26 1.5
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 25 1.9
pdb|1CG5|A Chain A, Deoxy Form Hemoglobin From Dasyatis Aka... 25 1.9
pdb|102M| Sperm Whale Myoglobin H64a Aquomet At Ph 9.0 >g... 25 2.5
pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa 25 2.5
pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex >gi|67... 25 2.5
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 25 3.3
pdb|2IFE|A Chain A, Translation Initiation Factor If3 From ... 24 4.3
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 23 7.4
pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinosit... 23 9.6
pdb|1JNK| The C-Jun N-Terminal Kinase (Jnk3s) Complexed W... 23 9.6
pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinosit... 23 9.6
>pdb|1JBG|A Chain A, Crystal Structure Of Mtan, The Bacillus Subtilis Multidrug
Transporter Activator, N-Terminus
Length = 109
Score = 40.8 bits (94), Expect = 4e-05
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 9 YLISVVAKILGVHPQTLRQYEKEGLIEPSR-TDGKMRLYSQRDMDKIKTILRLTRDMGVN 67
Y + VA+I GV +TL Y+ L+ PS TD RLYS D+++++ IL
Sbjct: 3 YQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFK------ 56
Query: 68 LAGVDIILRLKEKLDELDNLNKELQDALHKHSK 100
+I RL E + LD+ N + + AL +
Sbjct: 57 ----EIGFRLDEIKEMLDHPNFDRKAALQSQKE 85
>pdb|1CXZ|B Chain B, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
Length = 86
Score = 28.1 bits (61), Expect = 0.30
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 27 QYEKEGLIEPSRTDGKMRLYSQRDMDKIKTILRLTRDMGVNLAGVDIILRLKEKLDELDN 86
+ E+E L R + K++ + + + R T D+G +L V+++LR + LD
Sbjct: 24 ELERERLRREIRKELKLK-------EGAENLRRATTDLGRSLGPVELLLRGSSR--RLDL 74
Query: 87 LNKELQDALHKH 98
L+++LQ+ LH H
Sbjct: 75 LHQQLQE-LHAH 85
>pdb|1LFA|A Chain A, Cd11a I-Domain With Bound Mn++
pdb|1ZOP|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOP|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOO|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOO|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
pdb|1LFA|B Chain B, Cd11a I-Domain With Bound Mn++
pdb|1ZON| Cd11a I-Domain Without Bound Cation
Length = 187
Score = 27.7 bits (60), Expect = 0.39
Identities = 18/65 (27%), Positives = 30/65 (45%), Gaps = 3/65 (4%)
Query: 40 DGKMRLYS---QRDMDKIKTILRLTRDMGVNLAGVDIILRLKEKLDELDNLNKELQDALH 96
DG M L Q+ +D +K +++ + A V K + D D + ++ DAL
Sbjct: 13 DGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALL 72
Query: 97 KHSKN 101
KH K+
Sbjct: 73 KHVKH 77
>pdb|1MPY|A Chain A, Structure Of Catechol 2,3-Dioxygenase
(Metapyrocatechase) From Pseudomonas Putida Mt-2
pdb|1MPY|B Chain B, Structure Of Catechol 2,3-Dioxygenase
(Metapyrocatechase) From Pseudomonas Putida Mt-2
pdb|1MPY|C Chain C, Structure Of Catechol 2,3-Dioxygenase
(Metapyrocatechase) From Pseudomonas Putida Mt-2
pdb|1MPY|D Chain D, Structure Of Catechol 2,3-Dioxygenase
(Metapyrocatechase) From Pseudomonas Putida Mt-2
Length = 307
Score = 27.7 bits (60), Expect = 0.39
Identities = 17/63 (26%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
Query: 13 VVAKILGVHPQTLRQYEKEGLIEPSRTD-GKMRLYSQRDMDKIKTILRLTRDMGVNLAGV 71
V ++L + E GLIE R D G++ L + ++DK +LR + G++ G
Sbjct: 11 VQLRVLDMSKALEHYVELLGLIEMDRDDQGRVYLKAWTEVDKFSLVLREADEPGMDFMGF 70
Query: 72 DII 74
++
Sbjct: 71 KVV 73
>pdb|1EMY| Myoglobin Complexed With Cyanide
Length = 153
Score = 27.3 bits (59), Expect = 0.51
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 5 DEPLYLISVVAKILGVHPQTLRQYEKEGLIEPSRTDGKMRLYSQRDMDKIKTILRLTRDM 64
D P + +V ++ HP+TL +++K + +T+G+M+ + D+ K
Sbjct: 20 DIPGHGETVFVRLFTGHPETLEKFDK---FKHLKTEGEMK--ASEDLKK----------- 63
Query: 65 GVNLAGVDIILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNL 109
GV ++ L L + + E+Q H+ K P K L
Sbjct: 64 ----QGVTVLTALGGILKKKGHHEAEIQPLAQSHATKHKIPIKYL 104
>pdb|1CQP|A Chain A, Crystal Structure Analysis Of The Complex Lfa-1 (Cd11a) I-
Domain LOVASTATIN AT 2.6 A RESOLUTION
pdb|1CQP|B Chain B, Crystal Structure Analysis Of The Complex Lfa-1 (Cd11a) I-
Domain LOVASTATIN AT 2.6 A RESOLUTION
Length = 182
Score = 25.8 bits (55), Expect = 1.5
Identities = 18/65 (27%), Positives = 29/65 (43%), Gaps = 3/65 (4%)
Query: 40 DGKMRLYS---QRDMDKIKTILRLTRDMGVNLAGVDIILRLKEKLDELDNLNKELQDALH 96
DG M L Q+ +D +K +++ + A V K + D D + + DAL
Sbjct: 10 DGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKWKDPDALL 69
Query: 97 KHSKN 101
KH K+
Sbjct: 70 KHVKH 74
>pdb|1DGQ|A Chain A, Nmr Solution Structure Of The Inserted Domain Of Human
Leukocyte Function Associated Antigen-1
Length = 188
Score = 25.8 bits (55), Expect = 1.5
Identities = 18/65 (27%), Positives = 29/65 (43%), Gaps = 3/65 (4%)
Query: 40 DGKMRLYS---QRDMDKIKTILRLTRDMGVNLAGVDIILRLKEKLDELDNLNKELQDALH 96
DG M L Q+ +D +K +++ + A V K + D D + + DAL
Sbjct: 14 DGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKWKDPDALL 73
Query: 97 KHSKN 101
KH K+
Sbjct: 74 KHVKH 78
>pdb|1KCW| X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0 Angstroms
Length = 1046
Score = 25.8 bits (55), Expect = 1.5
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 32 GLIEPSRTDGKMRLYS---QRDMDKIKTILRLTRDMGVNLAGVDIILRLKEKLDELDNLN 88
GLI P + K L++ Q+D+DK + D +L D I D++D +
Sbjct: 533 GLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKED 592
Query: 89 KELQDALHKHSKN 101
++ Q++ HS N
Sbjct: 593 EDFQESNKMHSMN 605
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 25.4 bits (54), Expect = 1.9
Identities = 19/89 (21%), Positives = 35/89 (38%)
Query: 8 LYLISVVAKILGVHPQTLRQYEKEGLIEPSRTDGKMRLYSQRDMDKIKTILRLTRDMGVN 67
+ I + I+G + Q + LI+P + GK+R+ + I R +
Sbjct: 281 ILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARR 340
Query: 68 LAGVDIILRLKEKLDELDNLNKELQDALH 96
+DI E+ ++ N K +A H
Sbjct: 341 FQKIDITEPSIEETVQIINGLKPKYEAHH 369
>pdb|1CG5|A Chain A, Deoxy Form Hemoglobin From Dasyatis Akajei
pdb|1CG8|A Chain A, Co Form Hemoglobin From Dasyatis Akajei
Length = 141
Score = 25.4 bits (54), Expect = 1.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 70 GVDIILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNLN 110
G ++ L + LDNL+ L+D KH +N N +
Sbjct: 60 GKRVMNALADATHHLDNLHLHLEDLARKHGENLLVDPHNFH 100
>pdb|102M| Sperm Whale Myoglobin H64a Aquomet At Ph 9.0
pdb|103M| Sperm Whale Myoglobin H64a N-Butyl Isocyanide At Ph 9.0
Length = 154
Score = 25.0 bits (53), Expect = 2.5
Identities = 20/97 (20%), Positives = 42/97 (42%), Gaps = 20/97 (20%)
Query: 13 VVAKILGVHPQTLRQYEKEGLIEPSRTDGKMRLYSQRDMDKIKTILRLTRDMGVNLAGVD 72
++ ++ HP+TL ++++ + +T+ +M+ + D+ K AGV
Sbjct: 29 ILIRLFKSHPETLEKFDR---FKHLKTEAEMK--ASEDLKK---------------AGVT 68
Query: 73 IILRLKEKLDELDNLNKELQDALHKHSKNTKTPTKNL 109
++ L L + + EL+ H+ K P K L
Sbjct: 69 VLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYL 105
>pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa
Length = 303
Score = 25.0 bits (53), Expect = 2.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 77 LKEKLDELDNLNKELQDALHK 97
LKE D+LD L+KE +D +K
Sbjct: 167 LKEYTDKLDKLDKESKDKFNK 187
>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex
pdb|1SFC|E Chain E, Neuronal Synaptic Fusion Complex
pdb|1SFC|I Chain I, Neuronal Synaptic Fusion Complex
Length = 96
Score = 25.0 bits (53), Expect = 2.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 36 PSRTDGKMRLYSQRDMDKIKTILRLTRDMGVNLAGVDIILRLKEKLDELDNLNKELQ 92
P+ T + +Q +D++ I+R+ VD +L +KL ELD+ LQ
Sbjct: 24 PNLTSNRRLQQTQAQVDEVVDIMRVN---------VDKVLERDQKLSELDDRADALQ 71
>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
Length = 426
Score = 24.6 bits (52), Expect = 3.3
Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 3/48 (6%)
Query: 66 VNLAGVDIILRLKEKLDELDNLNKELQDAL---HKHSKNTKTPTKNLN 110
V LA ++ +KE +E D LNK+L AL K +N K K N
Sbjct: 238 VPLAYINFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDN 285
>pdb|2IFE|A Chain A, Translation Initiation Factor If3 From Escherichia Coli
Ribosome Binding Domain (Residues 84-180)
Length = 100
Score = 24.3 bits (51), Expect = 4.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 52 DKIKTILRLT-RDMGVNLAGVDIILRLKEKLDEL 84
DK K LR R+M G++++ R+K+ L EL
Sbjct: 42 DKAKITLRFRGREMAHQQIGMEVLNRVKDDLQEL 75
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 23.5 bits (49), Expect = 7.4
Identities = 14/61 (22%), Positives = 30/61 (48%)
Query: 14 VAKILGVHPQTLRQYEKEGLIEPSRTDGKMRLYSQRDMDKIKTILRLTRDMGVNLAGVDI 73
+A+ L +P + + G ++ + M+L + + + KT++ +T D+ V G I
Sbjct: 156 IARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERI 215
Query: 74 I 74
I
Sbjct: 216 I 216
>pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E7V|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E90|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase
Enzymatic Mechanism And Signalling
Length = 961
Score = 23.1 bits (48), Expect = 9.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 73 IILRLKEKLDELDNLN 88
+I +LK+KL+ L NLN
Sbjct: 622 VISQLKQKLENLQNLN 637
>pdb|1JNK| The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp
Length = 422
Score = 23.1 bits (48), Expect = 9.6
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 79 EKLDELDNLNKELQDALHKHSKNTKTPTKN 108
++LDE ++ +E ++ ++K N++ TKN
Sbjct: 378 KQLDEREHTIEEWKELIYKEVMNSEEKTKN 407
>pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 23.1 bits (48), Expect = 9.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 73 IILRLKEKLDELDNLN 88
+I +LK+KL+ L NLN
Sbjct: 622 VISQLKQKLENLQNLN 637
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.138 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 718,618
Number of Sequences: 13198
Number of extensions: 28538
Number of successful extensions: 74
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 19
length of query: 123
length of database: 2,899,336
effective HSP length: 77
effective length of query: 46
effective length of database: 1,883,090
effective search space: 86622140
effective search space used: 86622140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)