BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645640|ref|NP_207816.1| conserved hypothetical
helicase-like protein [Helicobacter pylori 26695]
(391 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 74 4e-14
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 73 5e-14
pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader S... 72 1e-13
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 72 1e-13
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 72 1e-13
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 72 1e-13
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 71 2e-13
pdb|1IXR|C Chain C, Ruva-Ruvb Complex 65 2e-11
pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva D... 65 2e-11
pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermoph... 65 2e-11
pdb|1JR3|A Chain A, Crystal Structure Of The Processivity C... 51 3e-07
pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And ... 36 0.007
pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 35 0.015
pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 35 0.015
pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of ... 32 0.16
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptida... 30 0.47
pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Loc... 30 0.47
pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX 30 0.47
pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfon... 30 0.47
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Cha... 30 0.47
pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomet... 30 0.47
pdb|1BUC|A Chain A, Butyryl-Coa Dehydrogenase (Bcad) (Bacte... 29 0.80
pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox... 29 1.0
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 28 1.4
pdb|1GW5|A Chain A, Ap2 Clathrin Adaptor Core 27 5.2
pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Ace... 26 6.8
pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocyste... 26 6.8
pdb|1FIU|A Chain A, Tetrameric Restriction Endonuclease Ngo... 26 6.8
pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase 26 6.8
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Co... 26 8.9
pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication In... 26 8.9
pdb|1JBK|A Chain A, Crystal Structure Of The First Nuceloti... 26 8.9
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 73.6 bits (179), Expect = 4e-14
Identities = 74/265 (27%), Positives = 118/265 (43%), Gaps = 42/265 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL++F+GQE++ K + +A ++ + H GPPG+GKT+LA IIA L+
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK------- 116
I + + K D+ L + + V+FIDE HRLNK +E L +E
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLER---GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135
Query: 117 -------------DHALILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++GA+T+ + LS +RSR I EL +L + +A
Sbjct: 136 GKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA 193
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNL---------LDLSAKIEDPITLKTLQSLRPH 213
+L+ +IE A + S G R + L + + +I I LKT++ L
Sbjct: 194 SLMDVEIEDAAAEMIAKRSRGTGRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN-- 251
Query: 214 SLNDGSYSDDTHYNLTSALIKSLRG 238
D D+ + +I+ RG
Sbjct: 252 --IDDEGLDEFDRKILKTIIEIYRG 274
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 73.2 bits (178), Expect = 5e-14
Identities = 74/265 (27%), Positives = 118/265 (43%), Gaps = 42/265 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL++F+GQE++ K + +A ++ + H GPPG+GKT+LA IIA L+
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK------- 116
I + + K D+ L + + V+FIDE HRLNK +E L +E
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLER---GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135
Query: 117 -------------DHALILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++GA+T+ + LS +RSR I EL +L + +A
Sbjct: 136 GKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA 193
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNL---------LDLSAKIEDPITLKTLQSLRPH 213
+L+ +IE A + S G R + L + + +I I LKT++ L
Sbjct: 194 SLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN-- 251
Query: 214 SLNDGSYSDDTHYNLTSALIKSLRG 238
D D+ + +I+ RG
Sbjct: 252 --IDDEGLDEFDRKILKTIIEIYRG 274
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 72.0 bits (175), Expect = 1e-13
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 28/213 (13%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML-----ER 63
P+ L+D +GQEH+V + L +++ PH F GPPGVGKT+ A +A L
Sbjct: 21 PQRLDDIVGQEHIVKR---LKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRH 77
Query: 64 PILLFNATDFK-LEDLRLKLKNYQNTLLKP-------VVFIDETHRLNKTQQEFLLPIME 115
L NA+D + + +R K+K + T KP ++F+DE L + Q+ L ME
Sbjct: 78 NFLELNASDERGINVIREKVKEFART--KPIGGASFKIIFLDEADALTQDAQQALRRTME 135
Query: 116 KDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAKALTLLKKQ-----IE 170
+ + + + + + I+SR IF PL D+ AK L + + E
Sbjct: 136 MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI----AKRLRYIAENEGLELTE 191
Query: 171 PGAKTYLLNNSAGDARALLNLLDLSAKIEDPIT 203
G + +L + GD R +N+L +A ++ IT
Sbjct: 192 EGLQA-ILYIAEGDMRRAINILQAAAALDKKIT 223
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 72.0 bits (175), Expect = 1e-13
Identities = 74/263 (28%), Positives = 115/263 (43%), Gaps = 38/263 (14%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL++F+GQE++ K + +A ++ + H GPPG+GKT+LA IIA L+
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK---DHAL 120
I + + K D+ L + + V+FIDE HRLNK +E L +E D +
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLER---GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135
Query: 121 ILGASTQDPNYS---------------LSHAIRSR-SFIFELTPLNKSDLDRLCAKALTL 164
G S + LS +RSR I EL +L + +A +L
Sbjct: 136 GKGPSAKSIRIDIQPFTLVGATVRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL 195
Query: 165 LKKQIEPGAKTYLLNNSAGDARALLNL---------LDLSAKIEDPITLKTLQSLRPHSL 215
+ +IE A + S G R + L + + +I I LKT++ L
Sbjct: 196 MDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN---- 251
Query: 216 NDGSYSDDTHYNLTSALIKSLRG 238
D D+ + +I+ RG
Sbjct: 252 IDDEGLDEFDRKILKTIIEIYRG 274
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 72.0 bits (175), Expect = 1e-13
Identities = 73/265 (27%), Positives = 118/265 (43%), Gaps = 42/265 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL++F+GQE++ K + +A ++ + H GPPG+GKT+LA IIA L+
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK------- 116
I + + K D+ L + + V+FIDE HRLNK +E L +E
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLER---GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135
Query: 117 -------------DHALILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++G++T+ + LS +RSR I EL +L + +A
Sbjct: 136 GKGPSAKSIRIDIQPFTLVGSTTR--SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA 193
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNL---------LDLSAKIEDPITLKTLQSLRPH 213
+L+ +IE A + S G R + L + + +I I LKT++ L
Sbjct: 194 SLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN-- 251
Query: 214 SLNDGSYSDDTHYNLTSALIKSLRG 238
D D+ + +I+ RG
Sbjct: 252 --IDDEGLDEFDRKILKTIIEIYRG 274
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 72.0 bits (175), Expect = 1e-13
Identities = 73/265 (27%), Positives = 118/265 (43%), Gaps = 42/265 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL++F+GQE++ K + +A ++ + H GPPG+G+T+LA IIA L+
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTN 78
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK------- 116
I + + K D+ L + + V+FIDE HRLNK +E L +E
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLER---GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135
Query: 117 -------------DHALILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++GA+T+ + LS +RSR I EL +L + +A
Sbjct: 136 GKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA 193
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNL---------LDLSAKIEDPITLKTLQSLRPH 213
+L+ +IE A + S G R + L + + +I I LKT++ L
Sbjct: 194 SLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN-- 251
Query: 214 SLNDGSYSDDTHYNLTSALIKSLRG 238
D D+ + +I+ RG
Sbjct: 252 --IDDEGLDEFDRKILKTIIEIYRG 274
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 70.9 bits (172), Expect = 2e-13
Identities = 73/265 (27%), Positives = 117/265 (43%), Gaps = 42/265 (15%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKA--LQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERP 64
L PKSL++F+GQE++ K + +A ++ + H GPPG+GKT+LA IIA L+
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEK------- 116
I + + K D+ L + + V+FIDE HRLNK +E L +E
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLER---GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMI 135
Query: 117 -------------DHALILGASTQDPNYSLSHAIRSR-SFIFELTPLNKSDLDRLCAKAL 162
++GA+T+ + LS +RS I EL +L + +A
Sbjct: 136 GKGPSAKSIRIDIQPFTLVGATTR--SGLLSSPLRSAFGIILELDFYTVKELKEIIKRAA 193
Query: 163 TLLKKQIEPGAKTYLLNNSAGDARALLNL---------LDLSAKIEDPITLKTLQSLRPH 213
+L+ +IE A + S G R + L + + +I I LKT++ L
Sbjct: 194 SLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN-- 251
Query: 214 SLNDGSYSDDTHYNLTSALIKSLRG 238
D D+ + +I+ RG
Sbjct: 252 --IDDEGLDEFDRKILKTIIEIYRG 274
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 64.7 bits (156), Expect = 2e-11
Identities = 41/112 (36%), Positives = 63/112 (55%), Gaps = 5/112 (4%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK+L++++GQE L K +A +++ P H +GPPG+GKT+LA +IA+ L
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + K DL L N ++FIDE HRL++ +E L P ME
Sbjct: 66 LRVTSGPAIEKPGDLAAILANSLEE--GDILFIDEIHRLSRQAEEHLYPAME 115
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 64.7 bits (156), Expect = 2e-11
Identities = 41/112 (36%), Positives = 63/112 (55%), Gaps = 5/112 (4%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK+L++++GQE L K +A +++ P H +GPPG+GKT+LA +IA+ L
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + K DL L N ++FIDE HRL++ +E L P ME
Sbjct: 66 LRVTSGPAIEKPGDLAAILANSLEE--GDILFIDEIHRLSRQAEEHLYPAME 115
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 64.7 bits (156), Expect = 2e-11
Identities = 41/112 (36%), Positives = 63/112 (55%), Gaps = 5/112 (4%)
Query: 7 LNPKSLEDFLGQEHLVGKDAPLFKALQSKHFP--HAFFYGPPGVGKTSLAQIIAYMLERP 64
L PK+L++++GQE L K +A +++ P H +GPPG+GKT+LA +IA+ L
Sbjct: 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65
Query: 65 ILLFNATDF-KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIME 115
+ + + K DL L N ++FIDE HRL++ +E L P ME
Sbjct: 66 LRVTSGPAIEKPGDLAAILANSLEE--GDILFIDEIHRLSRQAEEHLYPAME 115
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
Length = 373
Score = 50.8 bits (120), Expect = 3e-07
Identities = 68/259 (26%), Positives = 106/259 (40%), Gaps = 43/259 (16%)
Query: 9 PKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAF-FYGPPGVGKTSLAQIIAYMLERP--- 64
P++ D +GQEH++ L L HA+ F G GVGKTS+A+++A L
Sbjct: 12 PQTFADVVGQEHVL---TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 65 ----------------------ILLFNATDFKLEDLRLKLKNYQNTLLK---PVVFIDET 99
I + A+ K+ED R L N Q + V IDE
Sbjct: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128
Query: 100 HRLNKTQQEFLLPIMEK--DHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRL 157
H L++ LL +E+ +H L A+T DP L I SR F L L+ +
Sbjct: 129 HMLSRHSFNALLKTLEEPPEHVKFLLATT-DPQ-KLPVTILSRCLQFHLKALDVEQIRHQ 186
Query: 158 CAKALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLS-AKIEDPITLKTLQSLRPHSLN 216
L EP A L + G R L+L D + A + ++ + + ++
Sbjct: 187 LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML----- 241
Query: 217 DGSYSDDTHYNLTSALIKS 235
G+ DD +L A++++
Sbjct: 242 -GTLDDDQALSLVEAMVEA 259
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
Length = 458
Score = 36.2 bits (82), Expect = 0.007
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 28 LFKALQSKHFPHAFFYGPPGVGKTSLAQIIA-------YMLERPILLFNATDFKLEDLRL 80
LFKA+ K YGPPG GKT +A+ +A +++ P ++ +LR
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 81 KLKNYQNTLLKPVVFIDETHRL----NKTQQEF-------LLPIM----EKDHALILGAS 125
+ + ++FIDE + KT E LL +M ++ H +++ A+
Sbjct: 289 AFEEAEKN-APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM-AA 346
Query: 126 TQDPNYSLSHAIR 138
T PN S+ A+R
Sbjct: 347 TNRPN-SIDPALR 358
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 35.0 bits (79), Expect = 0.015
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 31/114 (27%)
Query: 44 GPPGVGKTSLAQIIAYMLERPILLFNATDF----------KLEDLRLKLKNYQNTLLKPV 93
GPPGVGKT LA+ +A P + + +DF ++ DL K + +
Sbjct: 80 GPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC----I 135
Query: 94 VFIDETHRLNK---------------TQQEFLLPI--MEKDHALILGASTQDPN 130
VFIDE + + T + L+ + EKD A+++ A+T P+
Sbjct: 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 189
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 35.0 bits (79), Expect = 0.015
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 31/114 (27%)
Query: 44 GPPGVGKTSLAQIIAYMLERPILLFNATDF----------KLEDLRLKLKNYQNTLLKPV 93
GPPGVGKT LA+ +A P + + +DF ++ DL K + +
Sbjct: 56 GPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC----I 111
Query: 94 VFIDETHRLNK---------------TQQEFLLPI--MEKDHALILGASTQDPN 130
VFIDE + + T + L+ + EKD A+++ A+T P+
Sbjct: 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 31.6 bits (70), Expect = 0.16
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 29 FKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPILLFNATDF 73
F+ L K GPPG GKT LA+ IA + P + +DF
Sbjct: 37 FQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81
>pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
Length = 443
Score = 30.0 bits (66), Expect = 0.47
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 44 GPPGVGKTSLAQIIAYMLERPILLFNATDF 73
GP GVGKT +A+ +A + P + AT F
Sbjct: 57 GPTGVGKTEIARRLAKLANAPFIKVEATKF 86
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 30.0 bits (66), Expect = 0.47
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 44 GPPGVGKTSLAQIIAYMLERPILLFNATDF 73
GP GVGKT +A+ +A + P + AT F
Sbjct: 56 GPTGVGKTEIARRLAKLANAPFIKVEATKF 85
>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
Length = 203
Score = 30.0 bits (66), Expect = 0.47
Identities = 21/62 (33%), Positives = 29/62 (45%), Gaps = 11/62 (17%)
Query: 310 LACSPKSNTAYRAINQALDCVQKGSLY-----PIPKHLLPNAKDYLYPHDYNGYVKQDYL 364
LA S KS + I++A++CV K LY P+ K PN + K+DYL
Sbjct: 146 LATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGKLFRPNERQVAQ------LAKKDYL 199
Query: 365 EK 366
K
Sbjct: 200 GK 201
>pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|B Chain B, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|C Chain C, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|D Chain D, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|E Chain E, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|F Chain F, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|S Chain S, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|T Chain T, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|U Chain U, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|V Chain V, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|W Chain W, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|X Chain X, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
Length = 444
Score = 30.0 bits (66), Expect = 0.47
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 44 GPPGVGKTSLAQIIAYMLERPILLFNATDF 73
GP GVGKT +A+ +A + P + AT F
Sbjct: 57 GPTGVGKTEIARRLAKLANAPFIKVEATKF 86
>pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
Length = 449
Score = 30.0 bits (66), Expect = 0.47
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 44 GPPGVGKTSLAQIIAYMLERPILLFNATDF 73
GP GVGKT +A+ +A + P + AT F
Sbjct: 63 GPTGVGKTEIARRLAKLANAPFIKVEATKF 92
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 30.0 bits (66), Expect = 0.47
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 44 GPPGVGKTSLAQIIAYMLERPILLFNATDF 73
GP GVGKT +A+ +A + P + AT F
Sbjct: 57 GPTGVGKTEIARRLAKLANAPFIKVEATKF 86
>pdb|1BUC|A Chain A, Butyryl-Coa Dehydrogenase (Bcad) (Bacterial Short-Chain
Acyl-Coa Dehydrogenase) (E.C.1.3.99.2) Complexed With
Fad And Acetoacetyl-Coenzyme A
pdb|1BUC|B Chain B, Butyryl-Coa Dehydrogenase (Bcad) (Bacterial Short-Chain
Acyl-Coa Dehydrogenase) (E.C.1.3.99.2) Complexed With
Fad And Acetoacetyl-Coenzyme A
Length = 383
Score = 29.3 bits (64), Expect = 0.80
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 47 GVGKTSLAQIIAYMLER-----PILLFNATDFKLEDLRLKLKNYQNTLLK 91
G+ + +LA + Y +R P+ F + FKL D++++++ +N + K
Sbjct: 256 GIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYK 305
>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At 1.8
Angstrom Resolution And Biochemical Characterizations Of
The A128v Mutant Implicated In Chronic Granulomatous
Disease
Length = 213
Score = 28.9 bits (63), Expect = 1.0
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 310 LACSPKSNTAYRAINQALDCVQKGSLY-----PIPKHLLPNAKDYLYPHDYNGYVKQDYL 364
LA S KS + I++A++CV K LY P+ + PN + K+DYL
Sbjct: 146 LATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVAQ------LAKKDYL 199
Query: 365 EK 366
K
Sbjct: 200 GK 201
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 28.5 bits (62), Expect = 1.4
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 21/107 (19%)
Query: 17 GQEHLVGKDAPLFKALQ---SKHFPHAFFYGPPGVGKTSLAQIIAYML---ERPILLFNA 70
G + L+G++ L +A+Q + + G GVGKT++A+ +A+ + + P ++ +
Sbjct: 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADC 243
Query: 71 TDFKLE------------DLRLKLKNYQNTL---LKPVVFIDETHRL 102
T + L+ D + K L ++FIDE H +
Sbjct: 244 TIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 290
>pdb|1GW5|A Chain A, Ap2 Clathrin Adaptor Core
Length = 621
Score = 26.6 bits (57), Expect = 5.2
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Query: 250 RLIAGGENPEFIARRLVIFA-SEDIGNANPNALNLAASCLFAVKQIGY 296
+ + G +++ + L IF DI + A+NL +S + KQIGY
Sbjct: 48 KALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGY 95
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
Length = 468
Score = 26.2 bits (56), Expect = 6.8
Identities = 15/61 (24%), Positives = 32/61 (51%), Gaps = 6/61 (9%)
Query: 160 KALTLLKKQIEPGAKT------YLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPH 213
+A +LK Q + GA+T Y+++++ G + N + + + D +T+ +RP+
Sbjct: 284 EANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPN 343
Query: 214 S 214
S
Sbjct: 344 S 344
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT7|B Chain B, Oxidized Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT8|A Chain A, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
pdb|1LT8|B Chain B, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
Length = 406
Score = 26.2 bits (56), Expect = 6.8
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 81 KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNY--SLSHAIR 138
KL+N N +L+ + +N+ + + ++ AL+ G +Q P+Y + S
Sbjct: 82 KLENRGNYVLEKI----SGQEVNEAAADIARQVADEGDALVAGGVSQTPSYLSAKSETEV 137
Query: 139 SRSFIFELTPLNKSDLDRLCAK 160
+ F+ +L K ++D L A+
Sbjct: 138 KKVFLQQLEVFMKKNVDFLIAE 159
>pdb|1FIU|A Chain A, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|1FIU|B Chain B, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|1FIU|C Chain C, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
pdb|1FIU|D Chain D, Tetrameric Restriction Endonuclease Ngomiv In Complex With
Cleaved Dna
Length = 286
Score = 26.2 bits (56), Expect = 6.8
Identities = 40/154 (25%), Positives = 59/154 (37%), Gaps = 22/154 (14%)
Query: 238 GSDENAS--IYYLARLIAGGE---NPEFIARRLVIFASEDIGNANPNALNLAASCLFAVK 292
GSD + I LIA E N + + +AS GN N L+ + SC + ++
Sbjct: 132 GSDYTITPDIIVTRNLIADAEINRNEFLVDENIATYASLRAGNGNMPLLHASISCKWTIR 191
Query: 293 QIGYPEARI-----------ILSQCVIYLACSPKSNTAYRAINQA-LDCVQKGSLYPIPK 340
AR L V+ A S + A+ +DCV +LY + +
Sbjct: 192 SDRAQNARSEGLNLVRNRKGRLPHIVVVTAEPTPSRISSIALGTGEIDCVYHFALYELEQ 251
Query: 341 HL----LPNAKDYLYPHDYNGYVKQDYLEKPLDL 370
L +A D Y NG +D + PLDL
Sbjct: 252 ILQSLNYEDALDLFYIM-VNGKRLKDISDLPLDL 284
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 26.2 bits (56), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (49%), Gaps = 5/42 (11%)
Query: 329 CVQKGSLYPIPKHLLPNAKDYLYP-----HDYNGYVKQDYLE 365
CV G Y IP++ +P+ K + P DY + DYL+
Sbjct: 363 CVFYGDYYGIPQYNIPSLKSKIDPLLIARRDYAYGTQHDYLD 404
>pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Mg-Adp-Alf3
Length = 589
Score = 25.8 bits (55), Expect = 8.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 38 PHAFFYGPPGVGKTSLAQIIAYML 61
P+ FF G GVGKTS++ A L
Sbjct: 9 PYLFFTGKGGVGKTSISCATAIRL 32
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 25.8 bits (55), Expect = 8.9
Identities = 44/148 (29%), Positives = 64/148 (42%), Gaps = 34/148 (22%)
Query: 7 LNPK-SLEDFLGQE-----HLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYM 60
LNPK +LE+F+ E + V K+A + L S + P F YG G GKT L Q
Sbjct: 4 LNPKYTLENFIVGEGNRLAYEVVKEA--LENLGSLYNP-IFIYGSVGTGKTHLLQAAGNE 60
Query: 61 LER---PILLFNATDF-----------KLEDLRLKLKNYQNTLLKPVVFIDETHRLNKTQ 106
++ ++ +A DF + + R K+ LL V F+ R TQ
Sbjct: 61 AKKRGYRVIYSSADDFAQAXVEHLKKGTINEFRNXYKSVDLLLLDDVQFLSGKER---TQ 117
Query: 107 QEFL-----LPIMEKDHALILGASTQDP 129
EF L ++EK I+ AS + P
Sbjct: 118 IEFFHIFNTLYLLEKQ---IILASDRHP 142
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 25.8 bits (55), Expect = 8.9
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 30/138 (21%)
Query: 21 LVGKDAPL---FKALQSKHFPHAFFYGPPGVGKTSLAQIIAYML---ERPILLFNATDFK 74
++G+D + + LQ + + G PGVGKT++ + +A + E P L
Sbjct: 24 VIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83
Query: 75 LE------------DLRLKLKNYQNTLLKP----VVFIDETHRLNKTQQ--------EFL 110
L+ + +LK N L K ++FIDE H + + L
Sbjct: 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNML 143
Query: 111 LPIMEKDHALILGASTQD 128
P + + +GA+T D
Sbjct: 144 KPALARGELHCVGATTLD 161
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,252,104
Number of Sequences: 13198
Number of extensions: 90431
Number of successful extensions: 272
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 35
length of query: 391
length of database: 2,899,336
effective HSP length: 90
effective length of query: 301
effective length of database: 1,711,516
effective search space: 515166316
effective search space used: 515166316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)