BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645641|ref|NP_207817.1| ferric uptake regulation
protein (fur) [Helicobacter pylori 26695]
(150 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Pe... 31 0.053
pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening... 31 0.069
pdb|2POL|A Chain A, Pol Iii (Beta Subunit) (E.C.2.7.7.7) >g... 31 0.069
pdb|1TN4| Four Calcium Tnc >gi|3212621|pdb|1TCF| Crystal... 27 1.3
pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue... 27 1.3
pdb|1A3Y|B Chain B, Odorant Binding Protein From Nasal Muco... 26 1.7
pdb|1DZP|A Chain A, Porcine Odorant Binding Protein Complex... 26 1.7
pdb|1A3Y|A Chain A, Odorant Binding Protein From Nasal Muco... 26 1.7
pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Sub... 26 2.2
pdb|5TNC| Troponin-C 25 2.9
pdb|1TOP| Troponin C >gi|1942982|pdb|1NCX| Troponin C >g... 25 2.9
pdb|4TNC| Troponin C 25 2.9
pdb|2JDX|A Chain A, Crystal Structure Of Human L-Arginine:g... 24 6.5
pdb|1TNW| Ef-Hand Mol_id: 1; Molecule: Troponin C; Chain:... 24 6.5
pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C W... 24 6.5
pdb|1KS9|A Chain A, Ketopantoate Reductase From Escherichia... 24 8.4
pdb|1POG| Oct-1 Pou Homeodomain Dna-Binding Protein Mutan... 24 8.4
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 31.2 bits (69), Expect = 0.053
Identities = 20/55 (36%), Positives = 27/55 (48%), Gaps = 5/55 (9%)
Query: 61 ISSVYRILNFLEKENFICVLETSKSGRRYEIAAKEHHDHIICLHCGKIIEFADPE 115
+ V RI+ L +E V+ T + G A+ H+I LH GKI E DPE
Sbjct: 189 VGEVLRIMQQLAEEGKTMVVVTHEMG-----FARHVSSHVIFLHQGKIEEEGDPE 238
>pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of Beta-Delta (1-140)
pdb|1JQJ|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of The Beta-Delta Complex
pdb|1JQJ|B Chain B, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of The Beta-Delta Complex
Length = 366
Score = 30.8 bits (68), Expect = 0.069
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 14 LRMSIKKNGLK---NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNF 70
+R+ + +N LK N+ ++EE +L ++T+S + + ++S V +LN
Sbjct: 281 VRLYVSENQLKITANNPEQEEAEEIL----------DVTYSGAEMEIGFNVSYVLDVLNA 330
Query: 71 LEKENFICVLETSKSGRRYEIAAKEHHDHII 101
L+ EN +L S S + E AA + +++
Sbjct: 331 LKCENVRMMLTDSVSSVQIEDAASQSAAYVV 361
>pdb|2POL|A Chain A, Pol Iii (Beta Subunit) (E.C.2.7.7.7)
pdb|2POL|B Chain B, Pol Iii (Beta Subunit) (E.C.2.7.7.7)
Length = 366
Score = 30.8 bits (68), Expect = 0.069
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 14 LRMSIKKNGLK---NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNF 70
+R+ + +N LK N+ ++EE +L ++T+S + + ++S V +LN
Sbjct: 281 VRLYVSENQLKITANNPEQEEAEEIL----------DVTYSGAEMEIGFNVSYVLDVLNA 330
Query: 71 LEKENFICVLETSKSGRRYEIAAKEHHDHII 101
L+ EN +L S S + E AA + +++
Sbjct: 331 LKCENVRMMLTDSVSSVQIEDAASQSAAYVV 361
>pdb|1TN4| Four Calcium Tnc
pdb|1TCF| Crystal Structure Of Calcium-Saturated Rabbit Skeletal Troponin C
pdb|2TN4| Four Calcium Tnc
Length = 159
Score = 26.6 bits (57), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKN 58
EE+ + SG H++ EEI ++ DKN
Sbjct: 113 EELAEIFRASGEHVTDEEIESLMKDGDKN 141
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 26.6 bits (57), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKN 58
EE+ + SG H++ EEI ++ DKN
Sbjct: 113 EELAEIFRASGEHVTDEEIESLMKDGDKN 141
>pdb|1A3Y|B Chain B, Odorant Binding Protein From Nasal Mucosa Of Pig
Length = 149
Score = 26.2 bits (56), Expect = 1.7
Identities = 21/62 (33%), Positives = 29/62 (45%), Gaps = 9/62 (14%)
Query: 34 SVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIC----VLETSKSGRRY 89
S L + G + + SI DK S VY LNF KEN IC ++ T + G Y
Sbjct: 16 SDLEKIGENAPFQVFMRSIEFDDKE---SKVY--LNFFSKENGICEEFSLIGTKQEGNTY 70
Query: 90 EI 91
++
Sbjct: 71 DV 72
>pdb|1DZP|A Chain A, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1E00|A Chain A, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl-7-Octen-2-Ol
pdb|1DZM|A Chain A, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1E06|A Chain A, Porcine Odorant Binding Protein Complexed With
5-Methyl-2-(1-Methylethyl)phenol
pdb|1E02|A Chain A, Porcine Odorant Binding Protein Complexed With Undecanal
pdb|1HQP|A Chain A, Crystal Structure Of A Truncated Form Of Porcine
Odorant- Binding Protein
pdb|1DZK|A Chain A, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1DZK|B Chain B, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1E00|B Chain B, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl-7-Octen-2-Ol
pdb|1DZJ|A Chain A, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZJ|B Chain B, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZP|B Chain B, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1DZM|B Chain B, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1E06|B Chain B, Porcine Odorant Binding Protein Complexed With
5-Methyl-2-(1-Methylethyl)phenol
pdb|1E02|B Chain B, Porcine Odorant Binding Protein Complexed With Undecanal
Length = 157
Score = 26.2 bits (56), Expect = 1.7
Identities = 21/62 (33%), Positives = 29/62 (45%), Gaps = 9/62 (14%)
Query: 34 SVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIC----VLETSKSGRRY 89
S L + G + + SI DK S VY LNF KEN IC ++ T + G Y
Sbjct: 24 SDLEKIGENAPFQVFMRSIEFDDKE---SKVY--LNFFSKENGICEEFSLIGTKQEGNTY 78
Query: 90 EI 91
++
Sbjct: 79 DV 80
>pdb|1A3Y|A Chain A, Odorant Binding Protein From Nasal Mucosa Of Pig
Length = 149
Score = 26.2 bits (56), Expect = 1.7
Identities = 21/62 (33%), Positives = 29/62 (45%), Gaps = 9/62 (14%)
Query: 34 SVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIC----VLETSKSGRRY 89
S L + G + + SI DK S VY LNF KEN IC ++ T + G Y
Sbjct: 16 SDLEKIGENAPFQVFMRSIEFDDKE---SKVY--LNFFSKENGICEEFSLIGTKQEGNTY 70
Query: 90 EI 91
++
Sbjct: 71 DV 72
>pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Subunit H Of The
V-Type Atpase Of Saccharomyces Cerevisiae
Length = 480
Score = 25.8 bits (55), Expect = 2.2
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 10 ILERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILN 69
++E L+ ++ NG N+KQ + ++ V TH+ E + SI DK + + +LN
Sbjct: 400 LIELLQAKVR-NGDVNAKQEKIIIQVALNDITHV-VELLPESIDVLDKTGGKADIMELLN 457
>pdb|5TNC| Troponin-C
Length = 162
Score = 25.4 bits (54), Expect = 2.9
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKN 58
EE+ +L +G H++ E+I ++ DKN
Sbjct: 116 EELGEILRATGEHVTEEDIEDLMKDSDKN 144
>pdb|1TOP| Troponin C
pdb|1NCX| Troponin C
pdb|1NCZ| Troponin C
pdb|1NCY| Troponin-C, Complex With Manganese
Length = 162
Score = 25.4 bits (54), Expect = 2.9
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKN 58
EE+ +L +G H++ E+I ++ DKN
Sbjct: 116 EELGEILRATGEHVTEEDIEDLMKDSDKN 144
>pdb|4TNC| Troponin C
Length = 162
Score = 25.4 bits (54), Expect = 2.9
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKN 58
EE+ +L +G H++ E+I ++ DKN
Sbjct: 116 EELGEILRATGEHVTEEDIEDLMKDSDKN 144
>pdb|2JDX|A Chain A, Crystal Structure Of Human L-Arginine:glycine
Amidinotransferase, Deletionmutant Atdeltam302
Length = 385
Score = 24.3 bits (51), Expect = 6.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 42 HLSPEEITHSIRQKDKNTSISSVYRIL 68
HL+P+ H I KD N I + + I+
Sbjct: 247 HLAPDYRVHIISFKDPNPHIDATFNII 273
>pdb|1TNW| Ef-Hand Mol_id: 1; Molecule: Troponin C; Chain: Null; Engineered:
Yes; Mutation: T130i
pdb|1TNX| Ef-Hand Mol_id: 1; Molecule: Troponin C; Chain: Null; Engineered:
Yes; Mutation: T130i
Length = 162
Score = 24.3 bits (51), Expect = 6.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKN 58
EE+ +L +G H+ E+I ++ DKN
Sbjct: 116 EELGEILRATGEHVIEEDIEDLMKDSDKN 144
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 24.3 bits (51), Expect = 6.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKN 58
EE+ +L +G H+ E+I ++ DKN
Sbjct: 30 EELGEILRATGEHVIEEDIEDLMKDSDKN 58
>pdb|1KS9|A Chain A, Ketopantoate Reductase From Escherichia Coli
Length = 291
Score = 23.9 bits (50), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 30 EEVVSVLYRSGTHLSPEEITHSIRQ 54
EEV +V+ R G H S E++ + Q
Sbjct: 209 EEVAAVIEREGHHTSAEDLRDYVMQ 233
>pdb|1POG| Oct-1 Pou Homeodomain Dna-Binding Protein Mutant With Arg Gly
Ser His Met Inserted At The N-Terminus And Asp Ile
Inserted At The C-Terminus (Ins(Rgshm-R6),Ins(I66-Di)
(Nmr, 13 Structures)
Length = 67
Score = 23.9 bits (50), Expect = 8.4
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 1 MKRLETLESILERLRMSIKKNGLKNSKQREEVVSVL 36
M+R + SI +R++++K+ L+N K E ++++
Sbjct: 5 MRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMI 40
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 795,259
Number of Sequences: 13198
Number of extensions: 30029
Number of successful extensions: 84
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 17
length of query: 150
length of database: 2,899,336
effective HSP length: 80
effective length of query: 70
effective length of database: 1,843,496
effective search space: 129044720
effective search space used: 129044720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)