BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645642|ref|NP_207818.1| hypothetical protein
[Helicobacter pylori 26695]
(165 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A87| Colicin N 25 3.5
pdb|1HHS|A Chain A, Rna Dependent Rna Polymerase From Dsrna... 25 4.5
pdb|1DT1|A Chain A, Thermus Thermophilus Cytochrome C552 Sy... 25 5.9
pdb|1FOC|A Chain A, Cytochrome C557: Improperly Folded Ther... 25 5.9
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded ... 25 5.9
pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Co... 25 5.9
pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide ... 25 5.9
pdb|1C52| Thermus Thermophilus Cytochrome-C552: A New Hig... 25 5.9
pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide ... 25 5.9
pdb|1I4X|A Chain A, Staphylococcal Enterotoxin C2, Monoclin... 24 7.7
pdb|1KLG|D Chain D, Crystal Structure Of Hla-Dr1TPI(23-37, ... 24 7.7
pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val29... 24 7.7
>pdb|1A87| Colicin N
Length = 321
Score = 25.4 bits (54), Expect = 3.5
Identities = 21/78 (26%), Positives = 32/78 (40%), Gaps = 7/78 (8%)
Query: 54 DGSKARKDKL-----NPNPKLRNRSDKGVVFLSDLIKVGKRSYKGGKAYNFYDGKTYYVR 108
DG+ A+ ++ N P S+ L+ LI S KG + Y F+ K YV+
Sbjct: 22 DGASAKVGEITITPDNSKPGRYISSNPEYSLLAKLIDA--ESIKGTEVYTFHTRKGQYVK 79
Query: 109 VTQNSNGDLEFTSSYDKW 126
VT + + Y W
Sbjct: 80 VTVPDSNIDKMRVDYVNW 97
>pdb|1HHS|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHS|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHS|C Chain C, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HHT|P Chain P, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HHT|Q Chain Q, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HHT|R Chain R, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Template
pdb|1HI0|P Chain P, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI0|Q Chain Q, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI0|R Chain R, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Initiation Complex
pdb|1HI1|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
pdb|1HI1|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
pdb|1HI1|C Chain C, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Plus Bound Ntp
Length = 664
Score = 25.0 bits (53), Expect = 4.5
Identities = 10/39 (25%), Positives = 20/39 (50%)
Query: 59 RKDKLNPNPKLRNRSDKGVVFLSDLIKVGKRSYKGGKAY 97
++ K+NP+P ++ + G FL D++ R G +
Sbjct: 476 KEGKVNPSPYMKISYEHGGAFLGDILLYDSRREPGSAIF 514
>pdb|1DT1|A Chain A, Thermus Thermophilus Cytochrome C552 Synthesized By
Escherichia Coli
Length = 129
Score = 24.6 bits (52), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 126 WGYVGKTFTWKRLSDEEIKNLKLKRFNLDEVL 157
WG K +K + EE+K L+ K+ +VL
Sbjct: 89 WGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVL 120
>pdb|1FOC|A Chain A, Cytochrome C557: Improperly Folded Thermus Thermophilus
C552
pdb|1FOC|B Chain B, Cytochrome C557: Improperly Folded Thermus Thermophilus
C552
Length = 132
Score = 24.6 bits (52), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 126 WGYVGKTFTWKRLSDEEIKNLKLKRFNLDEVL 157
WG K +K + EE+K L+ K+ +VL
Sbjct: 92 WGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVL 123
>pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine
Alpha-Thrombin And Prethrombin-2: Movement Of The Yppw
Segment And Active Site Residues Upon Ligand Binding
pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine
Alpha-Thrombin And Prethrombin-2: Movement Of The Yppw
Segment And Active Site Residues Upon Ligand Binding
Length = 308
Score = 24.6 bits (52), Expect = 5.9
Identities = 23/77 (29%), Positives = 31/77 (39%), Gaps = 20/77 (25%)
Query: 74 DKGVVFLSDLIKVGKRSYKGGKAYNFYDGKTYYVRVTQNSNGDLEFTSSYDKWGYVGKTF 133
DK L+++GK S +T Y R +E S DK Y+ +
Sbjct: 100 DKNFTVDDLLVRIGKHS------------RTRYER-------KVEKISMLDKI-YIHPRY 139
Query: 134 TWKRLSDEEIKNLKLKR 150
WK D +I LKLKR
Sbjct: 140 NWKENLDRDIALLKLKR 156
>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease
Inhibitor Ecotin
Length = 256
Score = 24.6 bits (52), Expect = 5.9
Identities = 23/77 (29%), Positives = 31/77 (39%), Gaps = 20/77 (25%)
Query: 74 DKGVVFLSDLIKVGKRSYKGGKAYNFYDGKTYYVRVTQNSNGDLEFTSSYDKWGYVGKTF 133
DK L+++GK S +T Y R +E S DK Y+ +
Sbjct: 51 DKNFTVDDLLVRIGKHS------------RTRYER-------KVEKISMLDKI-YIHPRY 90
Query: 134 TWKRLSDEEIKNLKLKR 150
WK D +I LKLKR
Sbjct: 91 NWKENLDRDIALLKLKR 107
>pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide A Alpha (Residues 7
- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1BBR|H Chain H, Thrombin (E.C.3.4.21.5) Complex With Fibrinopeptide Alpha
(Residues 7 - 16) (Three Complexes - One With
Epsilon-Thrombin And Two With Alpha-Thrombin)
pdb|1VIT|F Chain F, Thrombin:hirudin 51-65 Complex
pdb|1YCP|K Chain K, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 150
Score = 24.6 bits (52), Expect = 5.9
Identities = 23/77 (29%), Positives = 31/77 (39%), Gaps = 20/77 (25%)
Query: 74 DKGVVFLSDLIKVGKRSYKGGKAYNFYDGKTYYVRVTQNSNGDLEFTSSYDKWGYVGKTF 133
DK L+++GK S +T Y R +E S DK Y+ +
Sbjct: 51 DKNFTVDDLLVRIGKHS------------RTRYER-------KVEKISMLDKI-YIHPRY 90
Query: 134 TWKRLSDEEIKNLKLKR 150
WK D +I LKLKR
Sbjct: 91 NWKENLDRDIALLKLKR 107
>pdb|1C52| Thermus Thermophilus Cytochrome-C552: A New Highly Thermostable
Cytochrome-C Structure Obtained By Mad Phasing
Length = 131
Score = 24.6 bits (52), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 126 WGYVGKTFTWKRLSDEEIKNLKLKRFNLDEVL 157
WG K +K + EE+K L+ K+ +VL
Sbjct: 91 WGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVL 122
>pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide A Alpha (Residues 7
- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1UCY|N Chain N, Thrombin Complexed With Fibrinopeptide A Alpha (Residues 7
- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1ETR|H Chain H, Epsilon-Thrombin (E.C.3.4.21.5) Non-Covalent Complex With
Mqpa
pdb|1BBR|K Chain K, Thrombin (E.C.3.4.21.5) Complex With Fibrinopeptide Alpha
(Residues 7 - 16) (Three Complexes - One With
Epsilon-Thrombin And Two With Alpha-Thrombin)
pdb|1BBR|N Chain N, Thrombin (E.C.3.4.21.5) Complex With Fibrinopeptide Alpha
(Residues 7 - 16) (Three Complexes - One With
Epsilon-Thrombin And Two With Alpha-Thrombin)
pdb|1ETS|H Chain H, Epsilon-Thrombin (E.C.3.4.21.5) Non-Covalent Complex With
Napap
pdb|1ETT|H Chain H, Epsilon-Thrombin (E.C.3.4.21.5) Non-Covalent Complex With
4-Tapap
pdb|1TBR|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1AVG|H Chain H, Thrombin Inhibitor From Triatoma Pallidipennis
pdb|1HRT|H Chain H, Alpha-Thrombin (E.C.3.4.21.5) Complex With Hirudin Variant
1
pdb|1TOC|B Chain B, Structure Of Serine Proteinase
pdb|1TOC|D Chain D, Structure Of Serine Proteinase
pdb|1TOC|F Chain F, Structure Of Serine Proteinase
pdb|1TOC|H Chain H, Structure Of Serine Proteinase
pdb|1TBQ|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1VIT|H Chain H, Thrombin:hirudin 51-65 Complex
pdb|1A0H|B Chain B, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
Interactions And Location Of The Linker Chain
pdb|1A0H|E Chain E, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
Interactions And Location Of The Linker Chain
pdb|1MKX|H Chain H, The Co-Crystal Structure Of Unliganded Bovine
Alpha-Thrombin And Prethrombin-2: Movement Of The Yppw
Segment And Active Site Residues Upon Ligand Binding
pdb|1MKW|H Chain H, The Co-Crystal Structure Of Unliganded Bovine
Alpha-Thrombin And Prethrombin-2: Movement Of The Yppw
Segment And Active Site Residues Upon Ligand Binding
pdb|1YCP|H Chain H, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
pdb|1UVU|H Chain H, Bovine Thrombin--Bm12.1700 Complex
pdb|1UVT|H Chain H, Bovine Thrombin--Bm14.1248 Complex
Length = 259
Score = 24.6 bits (52), Expect = 5.9
Identities = 23/77 (29%), Positives = 31/77 (39%), Gaps = 20/77 (25%)
Query: 74 DKGVVFLSDLIKVGKRSYKGGKAYNFYDGKTYYVRVTQNSNGDLEFTSSYDKWGYVGKTF 133
DK L+++GK S +T Y R +E S DK Y+ +
Sbjct: 51 DKNFTVDDLLVRIGKHS------------RTRYER-------KVEKISMLDKI-YIHPRY 90
Query: 134 TWKRLSDEEIKNLKLKR 150
WK D +I LKLKR
Sbjct: 91 NWKENLDRDIALLKLKR 107
>pdb|1I4X|A Chain A, Staphylococcal Enterotoxin C2, Monoclinic Form
Crystallized At Ph 8.0
pdb|1SE2| Staphylococcal Enterotoxin C2, Monoclinic Form
pdb|1I4P|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
Crystallized At Ph 5.5
pdb|1I4R|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
Crystallized At Ph 6.5
pdb|1I4Q|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
Crystallized At Ph 6.0
pdb|1STE| Staphylococcal Enterotoxin C2 From Staphylococcus Aureus
pdb|1CQV|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin C2 At 100k
Crystallized At Ph 5.0
Length = 239
Score = 24.3 bits (51), Expect = 7.7
Identities = 14/54 (25%), Positives = 27/54 (49%), Gaps = 4/54 (7%)
Query: 32 KSSFVEFFEHNGKFYAYGISDVDGSKARKDK----LNPNPKLRNRSDKGVVFLS 81
++ +++F E+NG + Y + G K + K N N + ++S K V L+
Sbjct: 182 ETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLT 235
>pdb|1KLG|D Chain D, Crystal Structure Of Hla-Dr1TPI(23-37, Thr28-->ile Mutant)
Complexed With Staphylococcal Enterotoxin C3 Variant 3b2
(Sec3-3b2)
pdb|1KLU|D Chain D, Crystal Structure Of Hla-Dr1TPI(23-37) Complexed With
Staphylococcal Enterotoxin C3 Variant 3b2 (Sec3-3b2)
Length = 239
Score = 24.3 bits (51), Expect = 7.7
Identities = 14/54 (25%), Positives = 27/54 (49%), Gaps = 4/54 (7%)
Query: 32 KSSFVEFFEHNGKFYAYGISDVDGSKARKDK----LNPNPKLRNRSDKGVVFLS 81
++ +++F E+NG + Y + G K + K N N + ++S K V L+
Sbjct: 182 ETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLT 235
>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant
pdb|1JU9|B Chain B, Horse Liver Alcohol Dehydrogenase Val292ser Mutant
Length = 374
Score = 24.3 bits (51), Expect = 7.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 47 AYGISDVDGSKARKDKLNPNPK--LRNRSDKGVVF 79
AYG+S + G L+ NP L R+ KG +F
Sbjct: 285 AYGVSVISGVPPDSQNLSMNPMLLLSGRTWKGAIF 319
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.140 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,029,742
Number of Sequences: 13198
Number of extensions: 45165
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 12
length of query: 165
length of database: 2,899,336
effective HSP length: 81
effective length of query: 84
effective length of database: 1,830,298
effective search space: 153745032
effective search space used: 153745032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)