BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645643|ref|NP_207819.1| hypothetical protein
[Helicobacter pylori 26695]
(178 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DKI|C Chain C, Crystal Structure Of The Zymogen Form O... 33 0.025
pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase... 27 1.3
pdb|1LC0|A Chain A, Structure Of Biliverdin Reductase And T... 27 1.3
pdb|1GCU|A Chain A, Crystal Structure Of Rat Biliverdin Red... 27 1.3
pdb|1FU1|B Chain B, Crystal Structure Of Human Xrcc4 >gi|12... 27 1.8
pdb|1JGM|A Chain A, High Resolution Structure Of The Cadmiu... 26 2.3
pdb|1PSC|B Chain B, Phosphotriesterase From Pseudomonas Dim... 26 2.3
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed ... 26 2.3
pdb|1DPM|A Chain A, Three-Dimensional Structure Of The Zinc... 26 2.3
pdb|1PTA| Mol_id: 1; Molecule: Phosphotriesterase; Chain:... 26 2.3
pdb|1EYW|A Chain A, Three-Dimensional Structure Of The Zinc... 26 2.3
pdb|1I0B|A Chain A, High Resolution Structure Of The Mangan... 26 2.3
pdb|1GL2|A Chain A, Crystal Structure Of An Endosomal Snare... 25 5.1
pdb|1FSZ| Crystal Structure Of The Cell-Division Protein ... 25 5.1
pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melan... 24 8.7
pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pec... 24 8.7
pdb|1JNF|A Chain A, Rabbit Serum Transferrin At 2.6 A Resol... 24 8.7
>pdb|1DKI|C Chain C, Crystal Structure Of The Zymogen Form Of Streptococcal
Pyrogenic Exotoxin B Active Site (C47s) Mutant
pdb|1DKI|D Chain D, Crystal Structure Of The Zymogen Form Of Streptococcal
Pyrogenic Exotoxin B Active Site (C47s) Mutant
pdb|1DKI|B Chain B, Crystal Structure Of The Zymogen Form Of Streptococcal
Pyrogenic Exotoxin B Active Site (C47s) Mutant
pdb|1DKI|A Chain A, Crystal Structure Of The Zymogen Form Of Streptococcal
Pyrogenic Exotoxin B Active Site (C47s) Mutant
Length = 371
Score = 32.7 bits (73), Expect = 0.025
Identities = 30/104 (28%), Positives = 46/104 (43%), Gaps = 4/104 (3%)
Query: 30 VMQKGSKANQRVLNLATNTEFQVPLGHGIFSIEQSYCLEHAKESEKGFFESHKKYVDFQL 89
V+ G K + +L +T+ F V I S +SY +E KE++K Q
Sbjct: 62 VIVSGDKRSPEILGYSTSGSFDVNGKENIASFMESY-VEQIKENKKLDSTYAGTAEIKQP 120
Query: 90 IVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHA 133
+VK + +K + NQ NPY+ +I E SF+ HA
Sbjct: 121 VVKSLLDSKGIHYNQG---NPYNLLTPVIEKVKPGEQSFVGQHA 161
>pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
pdb|1IK9|B Chain B, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
Length = 213
Score = 26.9 bits (58), Expect = 1.3
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 65 YCLEHAKESEKGFFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVY 120
Y +KES FFE + K V F+L N ++NP + R+LI Y
Sbjct: 84 YTFNFSKESAYFFFEKNLKDVSFRL----------GSFNLEKVENPAEVIRELIAY 129
>pdb|1LC0|A Chain A, Structure Of Biliverdin Reductase And The Enzyme-Nadh
Complex
pdb|1LC3|A Chain A, Crystal Structure Of A Biliverdin Reductase
Enzyme-Cofactor Complex
Length = 294
Score = 26.9 bits (58), Expect = 1.3
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 74 EKGFFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVSEAS 127
EKG +YV+FQ +E +VG+N KN + + +D+ V + + + S
Sbjct: 216 EKGPGLKRNRYVNFQFTSGSLEEVPSVGVN----KNIFLKDQDIFVQKLLDQVS 265
>pdb|1GCU|A Chain A, Crystal Structure Of Rat Biliverdin Reductase At 1.4 A
Length = 295
Score = 26.9 bits (58), Expect = 1.3
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 74 EKGFFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVSEAS 127
EKG +YV+FQ +E +VG+N KN + + +D+ V + + + S
Sbjct: 217 EKGPGLKRNRYVNFQFTSGSLEEVPSVGVN----KNIFLKDQDIFVQKLLDQVS 266
>pdb|1FU1|B Chain B, Crystal Structure Of Human Xrcc4
pdb|1FU1|A Chain A, Crystal Structure Of Human Xrcc4
Length = 203
Score = 26.6 bits (57), Expect = 1.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 65 YCLEHAKESEKGFFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVY 120
Y +KES FFE + K V F+L N ++NP + R+LI Y
Sbjct: 84 YTFNFSKESXYFFFEKNLKDVSFRL----------GSFNLEKVENPAEVIRELIXY 129
>pdb|1JGM|A Chain A, High Resolution Structure Of The Cadmium-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1JGM|B Chain B, High Resolution Structure Of The Cadmium-Containing
Phosphotriesterase From Pseudomonas Diminuta
Length = 336
Score = 26.2 bits (56), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 77 FFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHA 133
FF S K + V+G+ A+A G+ V + +D RD+ + VS A+ + + A
Sbjct: 43 FFGSRKALAE--KAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVA 97
>pdb|1PSC|B Chain B, Phosphotriesterase From Pseudomonas Diminuta
pdb|1PSC|A Chain A, Phosphotriesterase From Pseudomonas Diminuta
Length = 365
Score = 26.2 bits (56), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 77 FFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHA 133
FF S K + V+G+ A+A G+ V + +D RD+ + VS A+ + + A
Sbjct: 72 FFGSRKALAE--KAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVA 126
>pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
Length = 516
Score = 26.2 bits (56), Expect = 2.3
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 25 EYLKEVMQKGSKANQRVLNLATNTEFQVPLGHGIFSIEQSY---CLEHAKESEKGF 77
E+ + +++ +K + + A +T FQVP+G I + Y + H E G+
Sbjct: 255 EWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGY 310
>pdb|1DPM|A Chain A, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog Diethyl
4-Methylbenzylphosphonate
pdb|1DPM|B Chain B, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog Diethyl
4-Methylbenzylphosphonate
Length = 329
Score = 26.2 bits (56), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 77 FFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHA 133
FF S K + V+G+ A+A G+ V + +D RD+ + VS A+ + + A
Sbjct: 38 FFGSRKALAE--KAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVA 92
>pdb|1PTA| Mol_id: 1; Molecule: Phosphotriesterase; Chain: Null; Ec: 3.5.-.-
Length = 318
Score = 26.2 bits (56), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 77 FFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHA 133
FF S K + V+G+ A+A G+ V + +D RD+ + VS A+ + + A
Sbjct: 37 FFGSRKALAE--KAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVA 91
>pdb|1EYW|A Chain A, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog
Triethylphosphate
pdb|1EZ2|A Chain A, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog
Diisopropylmethyl Phosphonate.
pdb|1EZ2|B Chain B, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog
Diisopropylmethyl Phosphonate
Length = 331
Score = 26.2 bits (56), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 77 FFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHA 133
FF S K + V+G+ A+A G+ V + +D RD+ + VS A+ + + A
Sbjct: 38 FFGSRKALAE--KAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVA 92
>pdb|1I0B|A Chain A, High Resolution Structure Of The Manganese-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0B|B Chain B, High Resolution Structure Of The Manganese-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1HZY|A Chain A, High Resolution Structure Of The Zinc-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1HZY|B Chain B, High Resolution Structure Of The Zinc-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0D|A Chain A, High Resolution Structure Of The ZincCADMIUM-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0D|B Chain B, High Resolution Structure Of The ZincCADMIUM-Containing
Phosphotriesterase From Pseudomonas Diminuta
Length = 332
Score = 26.2 bits (56), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 77 FFESHKKYVDFQLIVKGVEGAKAVGINQAVIKNPYDEKRDLIVYEPVSEASFLRLHA 133
FF S K + V+G+ A+A G+ V + +D RD+ + VS A+ + + A
Sbjct: 39 FFGSRKALAE--KAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVA 93
>pdb|1GL2|A Chain A, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 25.0 bits (53), Expect = 5.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 9 SLGHLFKKTQELEILHEYLKEVMQK 33
+L HL KT++LE E+ K QK
Sbjct: 38 NLDHLRNKTEDLEATSEHFKTTSQK 62
>pdb|1FSZ| Crystal Structure Of The Cell-Division Protein Ftsz At 2.8a
Resolution
Length = 372
Score = 25.0 bits (53), Expect = 5.1
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 88 QLIVKGVEGAKAVGIN---QAVIKNPYDEK 114
+L ++G+EGAK V IN Q +I+ D+K
Sbjct: 55 RLKMEGIEGAKTVAINTDAQQLIRTKADKK 84
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
Length = 559
Score = 24.3 bits (51), Expect = 8.7
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 25 EYLKEVMQKGSKANQRVLNLATNTEFQVPL 54
+Y + G + R+LN +T FQV L
Sbjct: 213 QYANVTLTPGKRHRLRILNTSTENHFQVSL 242
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 24.3 bits (51), Expect = 8.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 83 KYVDFQLIVKGVEGAKAVGINQAVIKNPYD 112
K+++ LI+ G +G V I I+ P D
Sbjct: 99 KFINGSLIIDGTDGTNNVIIRNVYIQTPID 128
>pdb|1JNF|A Chain A, Rabbit Serum Transferrin At 2.6 A Resolution
Length = 676
Score = 24.3 bits (51), Expect = 8.7
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 33 KGSKANQRVLNLATNTEFQVPLGHGIFSIEQSYCLEHAKESEKGFFESHKKYVDFQ 88
K + Q++L+L QV G+ + +C+ H+K + F + K VD +
Sbjct: 590 KAACVKQKLLDL------QVEFGNTVADCSSKFCMFHSKTKDLLFRDDTKCLVDLR 639
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 972,262
Number of Sequences: 13198
Number of extensions: 39316
Number of successful extensions: 70
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 17
length of query: 178
length of database: 2,899,336
effective HSP length: 82
effective length of query: 96
effective length of database: 1,817,100
effective search space: 174441600
effective search space used: 174441600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)