BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645647|ref|NP_207823.1| hypothetical protein
[Helicobacter pylori 26695]
         (131 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1LP3|A  Chain A, The Atomic Structure Of Adeno-Associate...    25  2.9
pdb|1EZF|A  Chain A, Crystal Structure Of Human Squalene Syn...    23  8.5

>pdb|1LP3|A Chain A, The Atomic Structure Of Adeno-Associated Virus (Aav-2), A
           Vector For Human Gene Therapy
          Length = 519

 Score = 25.0 bits (53), Expect = 2.9
 Identities = 16/52 (30%), Positives = 19/52 (35%), Gaps = 7/52 (13%)

Query: 54  PSVDNTVHNKMLSGSLNFN-------TENTNPKKNPTTTEKWIKFCTFIQAY 98
           P  D   H   L G             +NT    NP+TT    KF +FI  Y
Sbjct: 406 PHTDGHFHPSPLMGGFGLKHPPPQILIKNTPVPANPSTTFSAAKFASFITQY 457



>pdb|1EZF|A Chain A, Crystal Structure Of Human Squalene Synthase
 pdb|1EZF|B Chain B, Crystal Structure Of Human Squalene Synthase
 pdb|1EZF|C Chain C, Crystal Structure Of Human Squalene Synthase
          Length = 340

 Score = 23.5 bits (49), Expect = 8.5
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 32  RQISKSVQAIKIDANNNAIKYPPSVDNTVHNKMLSGSLNFNTENTNPKKNPTTTEKWIKF 91
           RQ+ +    I ++  N A KY   + + +  +M  G   F        K+ T+ ++W K+
Sbjct: 89  RQVLEDFPTISLEFRNLAEKYQTVIAD-ICRRMGIGMAEFLD------KHVTSEQEWDKY 141

Query: 92  CTFI 95
           C ++
Sbjct: 142 CHYV 145



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.315    0.129    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 725,839
Number of Sequences: 13198
Number of extensions: 25469
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 2
length of query: 131
length of database: 2,899,336
effective HSP length: 78
effective length of query: 53
effective length of database: 1,869,892
effective search space: 99104276
effective search space used: 99104276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)