BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645650|ref|NP_207826.1| 7,
8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (folK) [Helicobacter
pylori 26695]
(163 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EQO|A Chain A, Crystal Structure Of A Ternary Complex ... 66 2e-12
pdb|1CBK|A Chain A, 7,8-Dihydro-6-Hydroxymethylpterin-Pyrop... 64 1e-11
pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoen... 26 2.6
pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-R... 26 2.6
pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus ... 26 2.6
pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase... 26 2.6
pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) F... 25 4.4
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis... 25 4.4
pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1... 24 9.8
>pdb|1EQO|A Chain A, Crystal Structure Of A Ternary Complex Of
6-Hydroxymethyl-7, 8-Dihydropterin Pyrophosphokinase
From E. Coli With Mgampcpp And
6-Hydroxymethyl-7,8-Dihydropterin At 1.25 Angstrom
Resolution
pdb|1EQM|A Chain A, Crystal Structure Of Binary Complex Of
6-Hydroxymethyl-7,8- Dihydropterin Pyrophosphokinase
With Adenosine-5'- Diphosphate
pdb|1HKA| 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase
pdb|1EX8|A Chain A, Crystal Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Hp4a, The
Two-Substrate- Mimicking Inhibitor
pdb|1DY3|A Chain A, Ternary Complex Of
7,8-Dihydro-6-Hydroxymethylpterinpyrophosphokinase From
Escherichia Coli With Atp And A Substrate Analogue.
pdb|1EQ0|A Chain A, Solution Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Mgamppcp
Length = 158
Score = 66.2 bits (160), Expect = 2e-12
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 27 LGLGSNLKNPLKILKNCFLYFKNHSKIGKIFSSPIYINPPFGYTKQPNFYNATIILKTSL 86
+ +GSNL +PL+ + + + + S Y PP G QP++ NA + L+TSL
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 87 SLRHFFALVFYIERRFGRQRKRDFKDAPRTLDIDIIAFNQVILRQNDLALPHPKWSERDS 146
+ IE + GR RK + + PRTLD+DI+ F ++ L +PH R
Sbjct: 65 APEELLNHTQRIELQQGRVRKAE-RWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGF 123
Query: 147 VLVPL--ALQQILFKKGE 162
+L PL +++F GE
Sbjct: 124 MLWPLFEIAPELVFPDGE 141
>pdb|1CBK|A Chain A, 7,8-Dihydro-6-Hydroxymethylpterin-Pyrophosphokinase From
Haemophilus Influenzae
pdb|1CBK|B Chain B, 7,8-Dihydro-6-Hydroxymethylpterin-Pyrophosphokinase From
Haemophilus Influenzae
Length = 160
Score = 63.5 bits (153), Expect = 1e-11
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 27 LGLGSNLKNPLKILKNCFLYFKNHSKIGKIFSSPIYINPPFGYTKQPNFYNATIILKTSL 86
+ LGSNL P++ L S + +S Y + P G QP++ NA ++T L
Sbjct: 6 IALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAKIETEL 65
Query: 87 SLRHFFALVFYIERRFGRQRKRDFKDAPRTLDIDIIAFNQVILRQNDLALPHPKWSERDS 146
S + IE GR R R + + RTLD+DI+ + I++ L +PH R+
Sbjct: 66 SPLKLLDELQRIENEQGRVRLRRWGE--RTLDLDILLYGNEIIQNERLTIPHYDMHNREF 123
Query: 147 VLVPL 151
V+VPL
Sbjct: 124 VIVPL 128
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1524
Score = 25.8 bits (55), Expect = 2.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 9 RFFPSLFKKRLDFSNRVVLGLGSNLK 34
RF +L KR+D+S R V+ +G LK
Sbjct: 613 RFRQNLLGKRVDYSGRSVIVVGPQLK 638
>pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1264
Score = 25.8 bits (55), Expect = 2.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 9 RFFPSLFKKRLDFSNRVVLGLGSNLK 34
RF +L KR+D+S R V+ +G LK
Sbjct: 353 RFRQNLLGKRVDYSGRSVIVVGPQLK 378
>pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1265
Score = 25.8 bits (55), Expect = 2.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 9 RFFPSLFKKRLDFSNRVVLGLGSNLK 34
RF +L KR+D+S R V+ +G LK
Sbjct: 353 RFRQNLLGKRVDYSGRSVIVVGPQLK 378
>pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|N Chain N, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1524
Score = 25.8 bits (55), Expect = 2.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 9 RFFPSLFKKRLDFSNRVVLGLGSNLK 34
RF +L KR+D+S R V+ +G LK
Sbjct: 613 RFRQNLLGKRVDYSGRSVIVVGPQLK 638
>pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From Desulfovibrio
Desulfuricans
Length = 723
Score = 25.0 bits (53), Expect = 4.4
Identities = 15/35 (42%), Positives = 18/35 (50%), Gaps = 1/35 (2%)
Query: 114 PRTLDIDIIAF-NQVILRQNDLALPHPKWSERDSV 147
P + + I AF + V L DL LP W ERD V
Sbjct: 436 PESFIVCIEAFPDAVTLEYADLVLPPAFWCERDGV 470
>pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions.
pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
Length = 311
Score = 25.0 bits (53), Expect = 4.4
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 22 SNRVVLGL-GSNLKNPLKILKNCFLYFKNH------SKIGKIFSSPIYINPPFG 68
+NR+ + L G +LKNP+ CF + + + +K+G I ++P FG
Sbjct: 4 NNRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFG 57
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 498
Score = 23.9 bits (50), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 48 KNHSKIGKIFSSPIYINPPFGYTKQPNFYNATII 81
KN +I +I + + P G K PN YNA I+
Sbjct: 18 KNLGRIAQIIGPVLNVAFPPG--KMPNIYNALIV 49
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.328 0.145 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 923,930
Number of Sequences: 13198
Number of extensions: 35817
Number of successful extensions: 84
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 9
length of query: 163
length of database: 2,899,336
effective HSP length: 81
effective length of query: 82
effective length of database: 1,830,298
effective search space: 150084436
effective search space used: 150084436
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)