BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645651|ref|NP_207827.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(357 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A16| Aminopeptidase P From E. Coli With The Inhibito... 79 1e-15
pdb|1JAW| Aminopeptidase P From E. Coli Low Ph Form 79 1e-15
pdb|1AZ9| Aminopeptidase P From E. Coli 79 1e-15
pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminope... 51 2e-07
pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9... 44 2e-05
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trif... 44 2e-05
pdb|1MAT| Methionine Aminopeptidase (E.C.3.4.11.18) 44 2e-05
pdb|3MAT|A Chain A, E.Coli Methionine Aminopeptidase Transi... 44 2e-05
pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79a... 44 2e-05
pdb|1CHM|B Chain B, Creatine Amidinohydrolase (E.C.3.5.3.3) 39 0.001
pdb|1CHM|A Chain A, Creatine Amidinohydrolase (E.C.3.5.3.3) 39 0.001
pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creat... 38 0.002
pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthe... 33 0.065
pdb|1A5Z| Lactate Dehydrogenase From Thermotoga Maritima ... 32 0.085
pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocyste... 30 0.55
pdb|1QI7|A Chain A, The Crystal Structure At 2.0 A Of Sapor... 28 1.6
pdb|1J5U|A Chain A, Crystal Structure Of Conserved Hypothet... 27 3.6
pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainF... 27 4.7
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic ... 27 4.7
pdb|1JFK|A Chain A, Minimum Energy Representative Structure... 26 6.1
pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic ... 26 6.1
pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin 26 7.9
pdb|1UOK| Crystal Structure Of B. Cereus Oligo-1,6-Glucos... 26 7.9
>pdb|1A16| Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
Length = 440
Score = 78.6 bits (192), Expect = 1e-15
Identities = 82/334 (24%), Positives = 138/334 (40%), Gaps = 61/334 (18%)
Query: 57 NGVLAEVVESSDLVQSA------IDLIVKSSVKKLFFDPNQVNLQTYKRLNSALGDKVAL 110
N L +++ D+V A D+IV S+++KL Q + +
Sbjct: 114 NQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQ----------NLTAPATMI 163
Query: 111 EGVPSYHRQKRIIKNEHEIQLLKKSQALNVEAFENFAEYVKKIFDEKESLSERYLQHKVK 170
+ P H + R+ K+ EI +L+++ + A E + + E +L+ ++
Sbjct: 164 DWRPVVH-EMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRP------GMFEYHLEGEIH 216
Query: 171 DFLTREGVYDLSFEPILALNANASKPHALPSAKDFLKAEHSILLDMGIKYERYCSDRTRT 230
R G S+ I+ N H + + + +L+D G +Y+ Y D TRT
Sbjct: 217 HEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGD-LVLIDAGCEYKGYAGDITRT 275
Query: 231 AFFDPKDFVFKREQSFKDKERQKIYDIVKEAQEKAISGIRAG-----MTGKEADSLARGV 285
F F +R+ IYDIV E+ E ++ R G +TG+ + G+
Sbjct: 276 ---------FPVNGKFTQAQRE-IYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGL 325
Query: 286 -------------ISDYGYGQYFTHSTGHGIGLDIHELPYISSRSETILEEGMVFSVEPG 332
I+ + +F H H +GLD+H++ ILE GMV +VEPG
Sbjct: 326 VKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPG 385
Query: 333 IYIP---------GFFGVRIEDLVVIKNSRSELL 357
+YI G+RIED +VI + +E L
Sbjct: 386 LYIAPDAEVPEQYRGIGIRIEDDIVITETGNENL 419
>pdb|1JAW| Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 78.6 bits (192), Expect = 1e-15
Identities = 82/334 (24%), Positives = 138/334 (40%), Gaps = 61/334 (18%)
Query: 57 NGVLAEVVESSDLVQSA------IDLIVKSSVKKLFFDPNQVNLQTYKRLNSALGDKVAL 110
N L +++ D+V A D+IV S+++KL Q + +
Sbjct: 114 NQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQ----------NLTAPATMI 163
Query: 111 EGVPSYHRQKRIIKNEHEIQLLKKSQALNVEAFENFAEYVKKIFDEKESLSERYLQHKVK 170
+ P H + R+ K+ EI +L+++ + A E + + E +L+ ++
Sbjct: 164 DWRPVVH-EMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRP------GMFEYHLEGEIH 216
Query: 171 DFLTREGVYDLSFEPILALNANASKPHALPSAKDFLKAEHSILLDMGIKYERYCSDRTRT 230
R G S+ I+ N H + + + +L+D G +Y+ Y D TRT
Sbjct: 217 HEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGD-LVLIDAGCEYKGYAGDITRT 275
Query: 231 AFFDPKDFVFKREQSFKDKERQKIYDIVKEAQEKAISGIRAG-----MTGKEADSLARGV 285
F F +R+ IYDIV E+ E ++ R G +TG+ + G+
Sbjct: 276 ---------FPVNGKFTQAQRE-IYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGL 325
Query: 286 -------------ISDYGYGQYFTHSTGHGIGLDIHELPYISSRSETILEEGMVFSVEPG 332
I+ + +F H H +GLD+H++ ILE GMV +VEPG
Sbjct: 326 VKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPG 385
Query: 333 IYIP---------GFFGVRIEDLVVIKNSRSELL 357
+YI G+RIED +VI + +E L
Sbjct: 386 LYIAPDAEVPEQYRGIGIRIEDDIVITETGNENL 419
>pdb|1AZ9| Aminopeptidase P From E. Coli
Length = 457
Score = 78.6 bits (192), Expect = 1e-15
Identities = 82/334 (24%), Positives = 138/334 (40%), Gaps = 61/334 (18%)
Query: 57 NGVLAEVVESSDLVQSA------IDLIVKSSVKKLFFDPNQVNLQTYKRLNSALGDKVAL 110
N L +++ D+V A D+IV S+++KL Q + +
Sbjct: 131 NQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQ----------NLTAPATMI 180
Query: 111 EGVPSYHRQKRIIKNEHEIQLLKKSQALNVEAFENFAEYVKKIFDEKESLSERYLQHKVK 170
+ P H + R+ K+ EI +L+++ + A E + + E +L+ ++
Sbjct: 181 DWRPVVH-EMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRP------GMFEYHLEGEIH 233
Query: 171 DFLTREGVYDLSFEPILALNANASKPHALPSAKDFLKAEHSILLDMGIKYERYCSDRTRT 230
R G S+ I+ N H + + + +L+D G +Y+ Y D TRT
Sbjct: 234 HEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGD-LVLIDAGCEYKGYAGDITRT 292
Query: 231 AFFDPKDFVFKREQSFKDKERQKIYDIVKEAQEKAISGIRAG-----MTGKEADSLARGV 285
F F +R+ IYDIV E+ E ++ R G +TG+ + G+
Sbjct: 293 ---------FPVNGKFTQAQRE-IYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGL 342
Query: 286 -------------ISDYGYGQYFTHSTGHGIGLDIHELPYISSRSETILEEGMVFSVEPG 332
I+ + +F H H +GLD+H++ ILE GMV +VEPG
Sbjct: 343 VKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPG 402
Query: 333 IYIP---------GFFGVRIEDLVVIKNSRSELL 357
+YI G+RIED +VI + +E L
Sbjct: 403 LYIAPDAEVPEQYRGIGIRIEDDIVITETGNENL 436
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 51.2 bits (121), Expect = 2e-07
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 23/223 (10%)
Query: 116 YHRQKRIIKNEHEIQLLKKSQALNVEAFENFAEYV---KKIFDEKESLSERYLQHKVKDF 172
+H IK EI+ +KK+ A + + K +D + + E + + +VK
Sbjct: 9 HHHHMIRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPA 68
Query: 173 LTREGVYDLSFEPILALNANASKPHALPSAKDFLKAEHSILLDMGIKYERYCSDRTRTAF 232
G Y + ++ N H LP + K + +D+G Y+ D T
Sbjct: 69 FKGYGGYKYA----TCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYI 124
Query: 233 FDPKDFVFKREQSFKDKERQKIYDIVKEAQEKAISGIRAGMTGKEADSLARGVISDYGYG 292
D + +++ + +E EKAI I+ G+ + + + G+
Sbjct: 125 VGETD-----------ERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFN 173
Query: 293 QYFTHSTGHGIGLDIHELP----YISSRSETILEEGMVFSVEP 331
+ GHG+G ++HE P Y + + +L +GM ++EP
Sbjct: 174 VIRDY-VGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEP 215
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
Length = 264
Score = 44.3 bits (103), Expect = 2e-05
Identities = 48/218 (22%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 123 IKNEHEIQLLKKSQALNVEAFENFAEYVKKIFD--EKESLSERYL---QHKVKDFLTREG 177
IK +I+ ++ + L E E YVK E + + Y+ QH V L G
Sbjct: 5 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 64
Query: 178 VYDLSFEPILALNANASKPHALPSAKDFLKAEHSILLDMGIKYERYCSDRTRTAFFDPKD 237
+ + ++ N H +P LK + +D+ + + + D T F K
Sbjct: 65 -----YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGD-TSKMFIVGKP 118
Query: 238 FVFKREQSFKDKERQKIYDIVKEAQEKAISGIRAGMTGKEADSLARGVISDYGYGQYFTH 297
+ +++ I +E+ A+ ++ G+ +E + + + G+ +
Sbjct: 119 TIMG----------ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREY 168
Query: 298 STGHGIGLDIHELP----YISSRSETILEEGMVFSVEP 331
GHGIG HE P Y S + +L+ GM F++EP
Sbjct: 169 C-GHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEP 205
>pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
Length = 263
Score = 44.3 bits (103), Expect = 2e-05
Identities = 48/218 (22%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 123 IKNEHEIQLLKKSQALNVEAFENFAEYVKKIFD--EKESLSERYL---QHKVKDFLTREG 177
IK +I+ ++ + L E E YVK E + + Y+ QH V L G
Sbjct: 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 63
Query: 178 VYDLSFEPILALNANASKPHALPSAKDFLKAEHSILLDMGIKYERYCSDRTRTAFFDPKD 237
+ + ++ N H +P LK + +D+ + + + D T F K
Sbjct: 64 -----YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGD-TSKMFIVGKP 117
Query: 238 FVFKREQSFKDKERQKIYDIVKEAQEKAISGIRAGMTGKEADSLARGVISDYGYGQYFTH 297
+ +++ I +E+ A+ ++ G+ +E + + + G+ +
Sbjct: 118 TIMG----------ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREY 167
Query: 298 STGHGIGLDIHELP----YISSRSETILEEGMVFSVEP 331
GHGIG HE P Y S + +L+ GM F++EP
Sbjct: 168 C-GHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEP 204
>pdb|1MAT| Methionine Aminopeptidase (E.C.3.4.11.18)
Length = 264
Score = 44.3 bits (103), Expect = 2e-05
Identities = 48/218 (22%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 123 IKNEHEIQLLKKSQALNVEAFENFAEYVKKIFD--EKESLSERYL---QHKVKDFLTREG 177
IK +I+ ++ + L E E YVK E + + Y+ QH V L G
Sbjct: 5 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 64
Query: 178 VYDLSFEPILALNANASKPHALPSAKDFLKAEHSILLDMGIKYERYCSDRTRTAFFDPKD 237
+ + ++ N H +P LK + +D+ + + + D T F K
Sbjct: 65 -----YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGD-TSKMFIVGKP 118
Query: 238 FVFKREQSFKDKERQKIYDIVKEAQEKAISGIRAGMTGKEADSLARGVISDYGYGQYFTH 297
+ +++ I +E+ A+ ++ G+ +E + + + G+ +
Sbjct: 119 TIMG----------ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREY 168
Query: 298 STGHGIGLDIHELP----YISSRSETILEEGMVFSVEP 331
GHGIG HE P Y S + +L+ GM F++EP
Sbjct: 169 C-GHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEP 205
>pdb|3MAT|A Chain A, E.Coli Methionine Aminopeptidase Transition-State
Inhibitor Complex
Length = 265
Score = 44.3 bits (103), Expect = 2e-05
Identities = 48/218 (22%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 123 IKNEHEIQLLKKSQALNVEAFENFAEYVKKIFD--EKESLSERYL---QHKVKDFLTREG 177
IK +I+ ++ + L E E YVK E + + Y+ QH V L G
Sbjct: 5 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 64
Query: 178 VYDLSFEPILALNANASKPHALPSAKDFLKAEHSILLDMGIKYERYCSDRTRTAFFDPKD 237
+ + ++ N H +P LK + +D+ + + + D T F K
Sbjct: 65 -----YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGD-TSKMFIVGKP 118
Query: 238 FVFKREQSFKDKERQKIYDIVKEAQEKAISGIRAGMTGKEADSLARGVISDYGYGQYFTH 297
+ +++ I +E+ A+ ++ G+ +E + + + G+ +
Sbjct: 119 TIMG----------ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREY 168
Query: 298 STGHGIGLDIHELP----YISSRSETILEEGMVFSVEP 331
GHGIG HE P Y S + +L+ GM F++EP
Sbjct: 169 C-GHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEP 205
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 44.3 bits (103), Expect = 2e-05
Identities = 48/218 (22%), Positives = 88/218 (40%), Gaps = 26/218 (11%)
Query: 123 IKNEHEIQLLKKSQALNVEAFENFAEYVKKIFD--EKESLSERYL---QHKVKDFLTREG 177
IK +I+ ++ + L E E YVK E + + Y+ QH V L G
Sbjct: 5 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 64
Query: 178 VYDLSFEPILALNANASKPHALPSAKDFLKAEHSILLDMGIKYERYCSDRTRTAFFDPKD 237
+ + ++ N H +P LK + +D+ + + + D T F K
Sbjct: 65 -----YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGD-TSKMFIVGKP 118
Query: 238 FVFKREQSFKDKERQKIYDIVKEAQEKAISGIRAGMTGKEADSLARGVISDYGYGQYFTH 297
+ +++ I +E+ A+ ++ G+ +E + + + G+ +
Sbjct: 119 TIMG----------ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREY 168
Query: 298 STGHGIGLDIHELP----YISSRSETILEEGMVFSVEP 331
GHGIG HE P Y S + +L+ GM F++EP
Sbjct: 169 C-GHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEP 205
>pdb|1CHM|B Chain B, Creatine Amidinohydrolase (E.C.3.5.3.3)
Length = 401
Score = 38.9 bits (89), Expect = 0.001
Identities = 25/74 (33%), Positives = 39/74 (51%), Gaps = 13/74 (17%)
Query: 289 YGYGQYF---THSTGHGIGLDIHELPYISSRSETILEEGMVFSVEPGIY----IPGFFGV 341
+GYG F +H G GL++ E +T+LE GMV S+EP I +PG G
Sbjct: 319 FGYGHSFGTLSHYYGREAGLELRE------DIDTVLEPGMVVSMEPMIMLPEGLPGAGGY 372
Query: 342 RIEDLVVIKNSRSE 355
R D++++ + +E
Sbjct: 373 REHDILIVNENGAE 386
>pdb|1CHM|A Chain A, Creatine Amidinohydrolase (E.C.3.5.3.3)
Length = 401
Score = 38.9 bits (89), Expect = 0.001
Identities = 25/74 (33%), Positives = 39/74 (51%), Gaps = 13/74 (17%)
Query: 289 YGYGQYF---THSTGHGIGLDIHELPYISSRSETILEEGMVFSVEPGIY----IPGFFGV 341
+GYG F +H G GL++ E +T+LE GMV S+EP I +PG G
Sbjct: 319 FGYGHSFGTLSHYYGREAGLELRE------DIDTVLEPGMVVSMEPMIMLPEGLPGAGGY 372
Query: 342 RIEDLVVIKNSRSE 355
R D++++ + +E
Sbjct: 373 REHDILIVNENGAE 386
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 37.7 bits (86), Expect = 0.002
Identities = 26/74 (35%), Positives = 37/74 (49%), Gaps = 13/74 (17%)
Query: 289 YGYGQYF---THSTGHGIGLDIHELPYISSRSETILEEGMVFSVEPGIYI----PGFFGV 341
+GYG F H G G+++ E T+LE GMV S+EP + PG G
Sbjct: 319 FGYGHSFGVLXHYYGREAGVELRE------DIXTVLEPGMVVSMEPMVMXPEGEPGAGGY 372
Query: 342 RIEDLVVIKNSRSE 355
R D++VIK + +E
Sbjct: 373 REHDILVIKENXTE 386
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGO| Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 32.7 bits (73), Expect = 0.065
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 26/152 (17%)
Query: 189 LNANASKPHALPSAKD--FLKAEHSILLDMGIKYERYCSDRTRTAFFDPKDFVFKREQSF 246
L+ N H P D LK + +D+G+ + + +D T
Sbjct: 54 LSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVG------------ 101
Query: 247 KDKERQKIYDIVKEAQEKAISGIRAGMTGKEADSLARGVISDYGYGQYFTHSTGHGI--- 303
E ++ + KEA AIS RAG+ KE I G+ + + +GH I
Sbjct: 102 --MEEDELMEAAKEALNAAISVARAGVEIKELGKAIENEIRKRGF-KPIVNLSGHKIERY 158
Query: 304 ----GLDIHELPYISSRSETILEEGMVFSVEP 331
G+ I + +L+EG VF++EP
Sbjct: 159 KLHAGISIPNI--YRPHDNYVLKEGDVFAIEP 188
Score = 32.7 bits (73), Expect = 0.065
Identities = 27/91 (29%), Positives = 41/91 (44%), Gaps = 13/91 (14%)
Query: 253 KIYDIVKEAQEKAISGIRAGMTGKEADSLARGVISDYGYGQYFTHSTGHGIGLDIHEL-- 310
K +I K+ +EKAI R GM E +I + G F + L I+E+
Sbjct: 8 KAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFP------VNLSINEIAA 61
Query: 311 ---PYISSRSETILEEGMVFSVEPGIYIPGF 338
PY T+L+EG ++ G++I GF
Sbjct: 62 HYTPY--KGDTTVLKEGDYLKIDVGVHIDGF 90
>pdb|1A5Z| Lactate Dehydrogenase From Thermotoga Maritima (Tmldh)
Length = 319
Score = 32.3 bits (72), Expect = 0.085
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 62 EVVESSDLVQSAIDLIVKSSVKKLFFDPNQV-NLQTYKRLNSALGDKVALEGVP---SYH 117
E++E AI L V V+ +FFD +V L Y L LG K VP H
Sbjct: 218 EIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVY--LEDYLGVKDLCISVPVTLGKH 275
Query: 118 RQKRIIK---NEHEIQLLKKSQAL 138
+RI++ NE E++ +KS ++
Sbjct: 276 GVERILELNLNEEELEAFRKSASI 299
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT7|B Chain B, Oxidized Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With Four Sm(Iii) Ions
pdb|1LT8|A Chain A, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
pdb|1LT8|B Chain B, Reduced Homo Sapiens Betaine-Homocysteine S-
Methyltransferase In Complex With
S-(Delta-Carboxybutyl)-L- Homocysteine
Length = 406
Score = 29.6 bits (65), Expect = 0.55
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 18/141 (12%)
Query: 183 FEPILALNANASKPHALPSAKDFLKAEHSILLDMGIKYERYCSDRTRTAFFDPKDFVFKR 242
F+P ++L L +A+ LKA L+ + Y + D + F D +F F
Sbjct: 219 FDPTISLKTVKLMKEGLEAAQ--LKAH---LMSQPLAY--HTPDANKQGFIDLPEFPFGL 271
Query: 243 EQSFKDKERQKIYDIVKEAQEKAISGIR-----AGMTGKEADSLARGVISDYGYGQYFTH 297
E + +DI K A+E G+R G ++A + + G+ +
Sbjct: 272 EPRVATR-----WDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASE 326
Query: 298 STGH-GIGLDIHELPYISSRS 317
G G GLD+H P++ +R+
Sbjct: 327 KHGSWGSGLDMHTKPWVRARA 347
>pdb|1QI7|A Chain A, The Crystal Structure At 2.0 A Of Saporin So6, A Ribosome
Inactivating Protein From Saponaria Officinalis
Length = 253
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/79 (22%), Positives = 31/79 (38%)
Query: 91 QVNLQTYKRLNSALGDKVALEGVPSYHRQKRIIKNEHEIQLLKKSQALNVEAFENFAEYV 150
Q+ R LG + L + + +++ R++KNE L+ V F V
Sbjct: 128 QITQGDKSRKELGLGIDLLLTFMEAVNKKARVVKNEARFLLIAIQMTAEVARFRYIQNLV 187
Query: 151 KKIFDEKESLSERYLQHKV 169
K F K + +Q +V
Sbjct: 188 TKNFPNKFDSDNKVIQFEV 206
>pdb|1J5U|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm1083) From Thermotoga Maritima At 2.0 A Resolution
Length = 136
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/36 (38%), Positives = 19/36 (51%)
Query: 199 LPSAKDFLKAEHSILLDMGIKYERYCSDRTRTAFFD 234
L A++ L E I+LD K + Y + T AFFD
Sbjct: 36 LEEARNILLEEEGIVLDTEEKEKXYPLEETEDAFFD 71
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 26.6 bits (57), Expect = 4.7
Identities = 28/141 (19%), Positives = 51/141 (35%), Gaps = 27/141 (19%)
Query: 14 ENAMFFECAYSCDNALFLQLDDRSFFITDSRYTQEAKESVQPKNGVLAEVVESSDLVQSA 73
+N + +Y C +F + D F T+S +E E ++ N ++A+
Sbjct: 3 KNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADF---------- 52
Query: 74 IDLIVKSSVKKLFFDPNQVNLQTYKRLNSALGDKVALEGVPSYHRQKRIIKN-------- 125
DL+ K P ++ K + S L +PS + +
Sbjct: 53 DDLLSK---------PKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMV 103
Query: 126 EHEIQLLKKSQALNVEAFENF 146
E L+ K A+N +F +F
Sbjct: 104 EFAYALVGKLDAINKHSFNDF 124
>pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)- Triphosphate (Rp), Mg, And Mn
pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
Length = 212
Score = 26.6 bits (57), Expect = 4.7
Identities = 28/141 (19%), Positives = 51/141 (35%), Gaps = 27/141 (19%)
Query: 14 ENAMFFECAYSCDNALFLQLDDRSFFITDSRYTQEAKESVQPKNGVLAEVVESSDLVQSA 73
+N + +Y C +F + D F T+S +E E ++ N ++A+
Sbjct: 4 KNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADF---------- 53
Query: 74 IDLIVKSSVKKLFFDPNQVNLQTYKRLNSALGDKVALEGVPSYHRQKRIIKN-------- 125
DL+ K P ++ K + S L +PS + +
Sbjct: 54 DDLLSK---------PKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMV 104
Query: 126 EHEIQLLKKSQALNVEAFENF 146
E L+ K A+N +F +F
Sbjct: 105 EFAYALVGKLDAINKHSFNDF 125
>pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-Hand Protein From Entamoeba Histolytica
pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
Length = 134
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 108 VALEGVPSYHRQKRIIKNEHEIQLLKKS 135
V+ E V ++ +KR IKNE +QL+ KS
Sbjct: 17 VSYEEVKAFVSKKRAIKNEQLLQLIFKS 44
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 26.2 bits (56), Expect = 6.1
Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 27/140 (19%)
Query: 15 NAMFFECAYSCDNALFLQLDDRSFFITDSRYTQEAKESVQPKNGVLAEVVESSDLVQSAI 74
N + +Y C +F + D F T+S +E E ++ N ++A+
Sbjct: 1 NEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADF----------D 50
Query: 75 DLIVKSSVKKLFFDPNQVNLQTYKRLNSALGDKVALEGVPSYHRQKRIIKN--------E 126
DL+ K P ++ K + S L +PS + + E
Sbjct: 51 DLLSK---------PKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVE 101
Query: 127 HEIQLLKKSQALNVEAFENF 146
L+ K A+N +F +F
Sbjct: 102 FAYALVGKLDAINKHSFNDF 121
>pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin
Length = 1056
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 20/103 (19%)
Query: 198 ALPSAKDFLKAEHSILLDMGIKYERYCSDRTR-------------TAFFDPKDFVFKREQ 244
A+ KD +H + MG Y C + F +P ++ K
Sbjct: 156 AVVKTKDLNNCDHKVYKTMGTAYAERCPTCQKMNKNLRSTAVYNYAIFDEPSGYIIKSAH 215
Query: 245 SFKDKERQKIYDI------VKEAQEKAISGIRAGMTGKEADSL 281
S ++ ++ ++DI ++ Q+ + GI++ +A SL
Sbjct: 216 S-EEIQQLSVFDIKEGNVVIESRQKLILEGIQSAPAASQAASL 257
>pdb|1UOK| Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 25.8 bits (55), Expect = 7.9
Identities = 23/90 (25%), Positives = 40/90 (43%), Gaps = 9/90 (10%)
Query: 248 DKERQKIYDIVKEAQEKAISGIRAGMTG--KEADSLARGVISDYGYGQYFTHSTGHGIGL 305
+K RQ +Y+++K EK I G R + + + L + GY H G
Sbjct: 175 EKVRQDVYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMN---GP 231
Query: 306 DIHELPYISSRSETILEEGMVFSV--EPGI 333
+IH+ Y+ +E +L + +V PG+
Sbjct: 232 NIHK--YLHEMNEEVLSHYDIMTVGEMPGV 259
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,914,971
Number of Sequences: 13198
Number of extensions: 74490
Number of successful extensions: 252
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 25
length of query: 357
length of database: 2,899,336
effective HSP length: 89
effective length of query: 268
effective length of database: 1,724,714
effective search space: 462223352
effective search space used: 462223352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)