BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15645652|ref|NP_207828.1| 3-dehydroquinase type II (aroQ) [Helicobacter pylori 26695] (167 letters) Database: /var/www/html/HP/blast_new/blast/db/pdbaa 13,198 sequences; 2,899,336 total letters Searching...........................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1D0I|H  Chain H, Crystal Structure Of Type Ii Dehydroqui...   108  4e-25
pdb|1GTZ|A  Chain A, Structure Of Streptomyces Coelicolor Ty...   105  2e-24
pdb|1H05|A  Chain A, 3-Dehydroquinate Dehydratase From Mycob...   100  1e-22
pdb|1L7N|A  Chain A, Transition State Analogue Of Phosphoser...    28  0.42
pdb|1L7O|A  Chain A, Crystal Structure Of Phosphoserine Phos...    28  0.42
pdb|1F5S|A  Chain A, Crystal Structure Of Phosphoserine Phos...    28  0.55
pdb|1J97|A  Chain A, Phospho-Aspartyl Intermediate Analogue ...    28  0.55
pdb|1L5J|A  Chain A, Crystal Structure Of E. Coli Aconitase ...    25  4.6
pdb|1ICP|A  Chain A, Crystal Structure Of 12-Oxophytodienoat...    25  6.0
pdb|1AYE|    Human Procarboxypeptidase A2                          25  6.0
pdb|1DTD|A  Chain A, Crystal Structure Of The Complex Betwee...    25  6.0
pdb|1MV9|A  Chain A, Crystal Structure Of The Human Rxr Alph...    25  6.0
pdb|1LBD|    Ligand-Binding Domain Of The Human Nuclear Rece...    25  6.0
pdb|1FM6|A  Chain A, The 2.1 Angstrom Resolution Crystal Str...    25  6.0
pdb|1FBY|A  Chain A, Crystal Structure Of The Human Rxr Alph...    25  6.0
pdb|1MHO|    The 2.0 A Structure Of Holo S100b From Bovine B...    24  7.9
pdb|1CFP|A  Chain A, S100b (S100beta) Nmr Data Was Collected...    24  7.9

>pdb|1D0I|H Chain H, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With Phosphate Ions
 pdb|1D0I|E Chain E, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With Phosphate Ions
 pdb|1D0I|F Chain F, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With Phosphate Ions
 pdb|1D0I|G Chain G, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With Phosphate Ions
 pdb|1D0I|K Chain K, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With Phosphate Ions
 pdb|1D0I|L Chain L, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With Phosphate Ions
 pdb|1D0I|D Chain D, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With Phosphate Ions
 pdb|1D0I|A Chain A, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With Phosphate Ions
 pdb|1D0I|B Chain B, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With Phosphate Ions
 pdb|1D0I|I Chain I, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With Phosphate Ions
 pdb|1D0I|J Chain J, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With Phosphate Ions
 pdb|1D0I|C Chain C, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With Phosphate Ions
 pdb|1GU1|A Chain A, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With 2,3-Anydro-Quinic
           Acid
 pdb|1GU1|B Chain B, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With 2,3-Anydro-Quinic
           Acid
 pdb|1GU1|C Chain C, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With 2,3-Anydro-Quinic
           Acid
 pdb|1GU1|D Chain D, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With 2,3-Anydro-Quinic
           Acid
 pdb|1GU1|E Chain E, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With 2,3-Anydro-Quinic
           Acid
 pdb|1GU1|F Chain F, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With 2,3-Anydro-Quinic
           Acid
 pdb|1GU1|G Chain G, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With 2,3-Anydro-Quinic
           Acid
 pdb|1GU1|H Chain H, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With 2,3-Anydro-Quinic
           Acid
 pdb|1GU1|I Chain I, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With 2,3-Anydro-Quinic
           Acid
 pdb|1GU1|J Chain J, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With 2,3-Anydro-Quinic
           Acid
 pdb|1GU1|K Chain K, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With 2,3-Anydro-Quinic
           Acid
 pdb|1GU1|L Chain L, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor Complexed With 2,3-Anydro-Quinic
           Acid
 pdb|1GU0|G Chain G, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor
 pdb|1GU0|A Chain A, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor
 pdb|1GU0|B Chain B, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor
 pdb|1GU0|C Chain C, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor
 pdb|1GU0|D Chain D, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor
 pdb|1GU0|E Chain E, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor
 pdb|1GU0|F Chain F, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor
 pdb|1GU0|H Chain H, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor
 pdb|1GU0|I Chain I, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor
 pdb|1GU0|J Chain J, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor
 pdb|1GU0|K Chain K, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor
 pdb|1GU0|L Chain L, Crystal Structure Of Type Ii Dehydroquinase From
           Streptomyces Coelicolor
          Length = 156

 Score =  108 bits (269), Expect = 4e-25
 Identities = 58/134 (43%), Positives = 84/134 (62%), Gaps = 6/134 (4%)

Query: 3   ILVIQGPNLNMLGHRDPRLYGMVTLDQIHEI-MQTFVKQGNLDVELEFFQTNFEGEIIDK 61
           I+++ GPNLN+LG R P +YG  TL  +  + ++     G     ++F Q+N EGE++D 
Sbjct: 9   IMILNGPNLNLLGQRQPEIYGSDTLADVEALCVKAAAAHGGT---VDFRQSNHEGELVDW 65

Query: 62  IQESVGSDYEGIIINPGAFSHTSIAIADAIMLA-GKPVIEVHLTNIQAREEFRKNSYTGA 120
           I E+   ++ GI+INP A+SHTS+AI DA+    G PV+EVH++NI  RE FR +SY   
Sbjct: 66  IHEA-RLNHCGIVINPAAYSHTSVAILDALNTCDGLPVVEVHISNIHQREPFRHHSYVSQ 124

Query: 121 ACGGVIMGFGPLGY 134
              GV+ G G  GY
Sbjct: 125 RADGVVAGCGVQGY 138

>pdb|1GTZ|A Chain A, Structure Of Streptomyces Coelicolor Type Ii
           Dehydroquinase R23a Mutant In Complex With
           Dehydroshikimate
 pdb|1GTZ|B Chain B, Structure Of Streptomyces Coelicolor Type Ii
           Dehydroquinase R23a Mutant In Complex With
           Dehydroshikimate
 pdb|1GTZ|C Chain C, Structure Of Streptomyces Coelicolor Type Ii
           Dehydroquinase R23a Mutant In Complex With
           Dehydroshikimate
 pdb|1GTZ|D Chain D, Structure Of Streptomyces Coelicolor Type Ii
           Dehydroquinase R23a Mutant In Complex With
           Dehydroshikimate
 pdb|1GTZ|E Chain E, Structure Of Streptomyces Coelicolor Type Ii
           Dehydroquinase R23a Mutant In Complex With
           Dehydroshikimate
 pdb|1GTZ|F Chain F, Structure Of Streptomyces Coelicolor Type Ii
           Dehydroquinase R23a Mutant In Complex With
           Dehydroshikimate
 pdb|1GTZ|G Chain G, Structure Of Streptomyces Coelicolor Type Ii
           Dehydroquinase R23a Mutant In Complex With
           Dehydroshikimate
 pdb|1GTZ|H Chain H, Structure Of Streptomyces Coelicolor Type Ii
           Dehydroquinase R23a Mutant In Complex With
           Dehydroshikimate
 pdb|1GTZ|I Chain I, Structure Of Streptomyces Coelicolor Type Ii
           Dehydroquinase R23a Mutant In Complex With
           Dehydroshikimate
 pdb|1GTZ|J Chain J, Structure Of Streptomyces Coelicolor Type Ii
           Dehydroquinase R23a Mutant In Complex With
           Dehydroshikimate
 pdb|1GTZ|K Chain K, Structure Of Streptomyces Coelicolor Type Ii
           Dehydroquinase R23a Mutant In Complex With
           Dehydroshikimate
 pdb|1GTZ|L Chain L, Structure Of Streptomyces Coelicolor Type Ii
           Dehydroquinase R23a Mutant In Complex With
           Dehydroshikimate
          Length = 156

 Score =  105 bits (263), Expect = 2e-24
 Identities = 57/134 (42%), Positives = 83/134 (61%), Gaps = 6/134 (4%)

Query: 3   ILVIQGPNLNMLGHRDPRLYGMVTLDQIHEI-MQTFVKQGNLDVELEFFQTNFEGEIIDK 61
           I+++ GPNLN+LG   P +YG  TL  +  + ++     G     ++F Q+N EGE++D 
Sbjct: 9   IMILNGPNLNLLGQAQPEIYGSDTLADVEALCVKAAAAHGGT---VDFRQSNHEGELVDW 65

Query: 62  IQESVGSDYEGIIINPGAFSHTSIAIADAIMLA-GKPVIEVHLTNIQAREEFRKNSYTGA 120
           I E+   ++ GI+INP A+SHTS+AI DA+    G PV+EVH++NI  RE FR +SY   
Sbjct: 66  IHEA-RLNHCGIVINPAAYSHTSVAILDALNTCDGLPVVEVHISNIHQREPFRHHSYVSQ 124

Query: 121 ACGGVIMGFGPLGY 134
              GV+ G G  GY
Sbjct: 125 RADGVVAGCGVQGY 138

>pdb|1H05|A Chain A, 3-Dehydroquinate Dehydratase From Mycobacterium
           Tuberculosis In Complex With Sulphate
 pdb|2DHQ|A Chain A, 3-Dehydroquinate Dehydratase From Mycobacterium
           Tuberculosis
          Length = 146

 Score = 99.8 bits (247), Expect = 1e-22
 Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 3/134 (2%)

Query: 5   VIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQE 64
           VI GPNL  LG R+P +YG  T D++  +++   +   L ++    Q++ E +++D I +
Sbjct: 7   VINGPNLGRLGRREPAVYGGTTHDELVALIER--EAAELGLKAVVRQSDSEAQLLDWIHQ 64

Query: 65  SVGSDYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNSYTGAACGG 124
           +  +  E +I+N G  +HTS+A+ DA      P+IEVH++N+ AREEFR++SY      G
Sbjct: 65  AADAA-EPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRRHSYLSPIATG 123

Query: 125 VIMGFGPLGYNMAL 138
           VI+G G  GY +AL
Sbjct: 124 VIVGLGIQGYLLAL 137

>pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
           (Aluminum Fluoride Complex)
 pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
           (Aluminum Fluoride Complex)
 pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
           Phosphatase (Pi Complex)
 pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
           Phosphatase (Pi Complex)
          Length = 211

 Score = 28.5 bits (62), Expect = 0.42
 Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 4/67 (5%)

Query: 38  VKQGNL--DVELEFFQTNFEGEIIDKIQESVGSDYEG-IIINPGAFSHTSIAIAD-AIML 93
           VK G L  DVE E  + N +GEI++KI +  G + E  + +  GA   +    A   I  
Sbjct: 125 VKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISXFKKAGLKIAF 184

Query: 94  AGKPVIE 100
             KP+++
Sbjct: 185 CAKPILK 191

>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
 pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
 pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
           Structure
 pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
           Structure
          Length = 211

 Score = 28.5 bits (62), Expect = 0.42
 Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 4/67 (5%)

Query: 38  VKQGNL--DVELEFFQTNFEGEIIDKIQESVGSDYEG-IIINPGAFSHTSIAIAD-AIML 93
           VK G L  DVE E  + N +GEI++KI +  G + E  + +  GA   +    A   I  
Sbjct: 125 VKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISXFKKAGLKIAF 184

Query: 94  AGKPVIE 100
             KP+++
Sbjct: 185 CAKPILK 191

>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
           Methanococcus Jannaschii
 pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
           Methanococcus Jannaschii
          Length = 211

 Score = 28.1 bits (61), Expect = 0.55
 Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 4/67 (5%)

Query: 38  VKQGNL--DVELEFFQTNFEGEIIDKIQESVGSDYEG-IIINPGAFSHTSIAIAD-AIML 93
           VK G L  DVE E  + N +GEI++KI +  G + E  + +  GA   +    A   I  
Sbjct: 125 VKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIAF 184

Query: 94  AGKPVIE 100
             KP+++
Sbjct: 185 CAKPILK 191

>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
           Phosphatase
 pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
           Phosphatase
          Length = 211

 Score = 28.1 bits (61), Expect = 0.55
 Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 4/67 (5%)

Query: 38  VKQGNL--DVELEFFQTNFEGEIIDKIQESVGSDYEG-IIINPGAFSHTSIAIAD-AIML 93
           VK G L  DVE E  + N +GEI++KI +  G + E  + +  GA   +    A   I  
Sbjct: 125 VKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIAF 184

Query: 94  AGKPVIE 100
             KP+++
Sbjct: 185 CAKPILK 191

>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
 pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
          Length = 865

 Score = 25.0 bits (53), Expect = 4.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 23  GMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIID 60
           G+   D +H I    +KQG L VE +  +  F G I++
Sbjct: 543 GITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILE 580

>pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
           Tomato Complexed With Peg400
 pdb|1ICP|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
           Tomato Complexed With Peg400
 pdb|1ICQ|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
           Tomato Complexed With 9r,13r-Opda
 pdb|1ICS|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
           Tomato
 pdb|1ICS|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
           Tomato
 pdb|1ICQ|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
           Tomato Complexed With 9r,13r-Opda
          Length = 376

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 12/29 (41%), Positives = 18/29 (61%), Gaps = 2/29 (6%)

Query: 54  FEGEIIDKIQESVGSDYEGIIINPGAFSH 82
           F  EI++ +   +GSD  GI I+P  F+H
Sbjct: 219 FALEIVEAVANEIGSDRVGIRISP--FAH 245

>pdb|1AYE|   Human Procarboxypeptidase A2
          Length = 401

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 18/73 (24%), Positives = 33/73 (44%)

Query: 26  TLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSDYEGIIINPGAFSHTSI 85
           TL++I + M   V +    V      ++FE   ++ ++ S G D   I ++ G  +   +
Sbjct: 107 TLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGDKPAIWLDAGIHAREWV 166

Query: 86  AIADAIMLAGKPV 98
             A A+  A K V
Sbjct: 167 TQATALWTANKIV 179

>pdb|1DTD|A Chain A, Crystal Structure Of The Complex Between The Leech
          Carboxypeptidase Inhibitor And The Human
          Carboxypeptidase A2 (Lci-Cpa2)
          Length = 303

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 18/73 (24%), Positives = 33/73 (44%)

Query: 26 TLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSDYEGIIINPGAFSHTSI 85
          TL++I + M   V +    V      ++FE   ++ ++ S G D   I ++ G  +   +
Sbjct: 8  TLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGDKPAIWLDAGIHAREWV 67

Query: 86 AIADAIMLAGKPV 98
            A A+  A K V
Sbjct: 68 TQATALWTANKIV 80

>pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
           Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
           Acid) And A Coactivator Peptide
 pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
           Domain Bound To The Synthetic Agonist Compound Bms 649
           And A Coactivator Peptide
 pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
           Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
           To The Synthetic Agonist Compound Bms 649 And A
           Coactivator Peptide
 pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
           Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
           To The Synthetic Agonist Compound Bms 649 And A
           Coactivator Peptide
 pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
           Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
           To The Synthetic Agonist Compound Bms 649 And A
           Coactivator Peptide
 pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
           Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
           To The Synthetic Agonist Compound Bms 649 And A
           Coactivator Peptide
          Length = 240

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 10/16 (62%), Positives = 13/16 (80%)

Query: 79  AFSHTSIAIADAIMLA 94
           +FSH SIA+ D I+LA
Sbjct: 90  SFSHRSIAVKDGILLA 105

>pdb|1LBD|   Ligand-Binding Domain Of The Human Nuclear Receptor Rxr-Alpha
          Length = 282

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 10/16 (62%), Positives = 13/16 (80%)

Query: 79  AFSHTSIAIADAIMLA 94
           +FSH SIA+ D I+LA
Sbjct: 132 SFSHRSIAVKDGILLA 147

>pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
           Heterodimer Of The Human Rxralpha And Ppargamma Ligand
           Binding Domains Respectively Bound With 9-Cis Retinoic
           Acid And Rosiglitazone And Co-Activator Peptides.
 pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
           Heterodimer Of The Human Rxralpha And Ppargamma Ligand
           Binding Domains Respectively Bound With 9-Cis Retinoic
           Acid And Rosiglitazone And Co-Activator Peptides.
 pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
           Heterodimer Of The Human Rxralpha And Ppargamma Ligand
           Binding Domains Respectively Bound With 9-Cis Retinoic
           Acid And Gi262570 And Co-Activator Peptides.
 pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
           Heterodimer Of The Human Ppargamma And Rxralpha Ligand
           Binding Domains Respectively Bound With Gw409544 And
           9-Cis Retinoic Acid And Co-Activator Peptides.
 pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
           Rxralpha Ligand Binding Domain Tetramer In The Presence
           Of A Non-Activating Retinoic Acid Isomer.
 pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
           Rxralpha Ligand Binding Domain In Tetramer In The
           Absence Of Ligand
 pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
           Rxralpha Ligand Binding Domain Tetramer In The Presence
           Of A Non-Activating Retinoic Acid Isomer.
 pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
           Rxralpha Ligand Binding Domain In Tetramer In The
           Absence Of Ligand
 pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
           Rxralpha Ligand Binding Domain Tetramer In The Presence
           Of A Non-Activating Retinoic Acid Isomer.
 pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
           Rxralpha Ligand Binding Domain In Tetramer In The
           Absence Of Ligand
 pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
           Rxralpha Ligand Binding Domain Tetramer In The Presence
           Of A Non-Activating Retinoic Acid Isomer.
 pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
           Rxralpha Ligand Binding Domain In Tetramer In The
           Absence Of Ligand
          Length = 238

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 10/16 (62%), Positives = 13/16 (80%)

Query: 79  AFSHTSIAIADAIMLA 94
           +FSH SIA+ D I+LA
Sbjct: 88  SFSHRSIAVKDGILLA 103

>pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
           Domain Bound To 9-Cis Retinoic Acid
 pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
           Domain Bound To 9-Cis Retinoic Acid
          Length = 239

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 10/16 (62%), Positives = 13/16 (80%)

Query: 79  AFSHTSIAIADAIMLA 94
           +FSH SIA+ D I+LA
Sbjct: 89  SFSHRSIAVKDGILLA 104

>pdb|1MHO|   The 2.0 A Structure Of Holo S100b From Bovine Brain
          Length = 88

 Score = 24.3 bits (51), Expect = 7.9
 Identities = 11/42 (26%), Positives = 25/42 (59%)

Query: 31 HEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSDYEG 72
          H++ ++ +K+   +    F +   E E++DK+ E++ SD +G
Sbjct: 25 HKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDG 66

>pdb|1CFP|A Chain A, S100b (S100beta) Nmr Data Was Collected From A Sample Of
          Calcium Free Protein At Ph 6.3 And A Temperature Of 311
          K And 1.7-6.9 Mm Concentration, 25 Structures
 pdb|1CFP|B Chain B, S100b (S100beta) Nmr Data Was Collected From A Sample Of
          Calcium Free Protein At Ph 6.3 And A Temperature Of 311
          K And 1.7-6.9 Mm Concentration, 25 Structures
          Length = 92

 Score = 24.3 bits (51), Expect = 7.9
 Identities = 11/42 (26%), Positives = 25/42 (59%)

Query: 31 HEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSDYEG 72
          H++ ++ +K+   +    F +   E E++DK+ E++ SD +G
Sbjct: 26 HKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDG 67

  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.138    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 953,193
Number of Sequences: 13198
Number of extensions: 37084
Number of successful extensions: 156
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 17
length of query: 167
length of database: 2,899,336
effective HSP length: 81
effective length of query: 86
effective length of database: 1,830,298
effective search space: 157405628
effective search space used: 157405628
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)