BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645653|ref|NP_207829.1| hypothetical protein
[Helicobacter pylori 26695]
         (429 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1BWV|A  Chain A, Activated Ribulose 1,5-Bisphosphate Car...    26  9.9

>pdb|1BWV|A Chain A, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
           (Rubisco) Complexed With The Reaction Intermediate
           Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
 pdb|1BWV|C Chain C, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
           (Rubisco) Complexed With The Reaction Intermediate
           Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
 pdb|1BWV|E Chain E, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
           (Rubisco) Complexed With The Reaction Intermediate
           Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
 pdb|1BWV|G Chain G, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
           (Rubisco) Complexed With The Reaction Intermediate
           Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
          Length = 493

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 254 SNALEKKGAIEQSRVQNQSFEEDLKRYAK 282
           S ++E+K   E++R++N  +E  +  YAK
Sbjct: 2   SQSIEEKSVQERTRIKNSRYESGVIPYAK 30



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.334    0.145    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,977,281
Number of Sequences: 13198
Number of extensions: 67229
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 1
length of query: 429
length of database: 2,899,336
effective HSP length: 91
effective length of query: 338
effective length of database: 1,698,318
effective search space: 574031484
effective search space used: 574031484
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)