BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644735|ref|NP_206905.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(155 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J6X|B Chain B, Crystal Structure Of Helicobacter Pylor... 292 1e-80
pdb|1J98|A Chain A, The 1.2 Angstrom Structure Of Bacillus ... 132 2e-32
pdb|1IE0|A Chain A, Crystal Structure Of Luxs 132 2e-32
pdb|1INN|A Chain A, Crystal Structure Of D. Radiodurans Lux... 122 2e-29
pdb|1JOE|A Chain A, Crystal Structure Of Autoinducer-2 Prod... 104 5e-24
pdb|1J6W|A Chain A, Crystal Structure Of Haemophilus Influe... 97 8e-22
pdb|1K47|A Chain A, Crystal Structure Of The Streptococcus ... 27 0.80
pdb|1DMS| Structure Of Dmso Reductase 27 1.4
pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase Fr... 27 1.4
pdb|4DMR| Reduced Dmso Reductase From Rhodobacter Capsula... 26 1.8
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence... 26 2.3
pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepe... 26 2.3
pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sp... 25 4.0
pdb|1INF| Influenza Virus BLEE40 NEURAMINIDASE COMPLEXED ... 24 6.8
pdb|1B9V|A Chain A, Novel Aromatic Inhibitors Of Influenza ... 24 6.8
>pdb|1J6X|B Chain B, Crystal Structure Of Helicobacter Pylori Luxs
pdb|1J6X|A Chain A, Crystal Structure Of Helicobacter Pylori Luxs
Length = 160
Score = 292 bits (748), Expect = 1e-80
Identities = 140/151 (92%), Positives = 145/151 (95%)
Query: 5 KMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLV 64
K NVESFNLDHTKVKAPYVR+ADRKKGVNGDLIVKYDVRFKQPN+DH D PSLHSLEHLV
Sbjct: 2 KXNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHXDXPSLHSLEHLV 61
Query: 65 AEIIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQ 124
AEIIRNHA+YVVDWSP GCQTGFYLTVLNHDNYTEILEVLEKT QDVLKA EVPASNEKQ
Sbjct: 62 AEIIRNHANYVVDWSPXGCQTGFYLTVLNHDNYTEILEVLEKTXQDVLKAKEVPASNEKQ 121
Query: 125 CGWAANHTLEGAKDLARAFLDKRAEWSEVGV 155
CGWAANHTLEGA++LARAFLDKRAEWSEVGV
Sbjct: 122 CGWAANHTLEGAQNLARAFLDKRAEWSEVGV 152
>pdb|1J98|A Chain A, The 1.2 Angstrom Structure Of Bacillus Subtilis Luxs
pdb|1JVI|A Chain A, The 2.2 Angstrom Resolution Structure Of Bacillus Subtilis
LuxsRIBOSILHOMOCYSTEINE COMPLEX
pdb|1JQW|A Chain A, The 2.3 Angstrom Resolution Structure Of Bacillus Subtilis
LuxsHOMOCYSTEINE COMPLEX
Length = 157
Score = 132 bits (332), Expect = 2e-32
Identities = 70/148 (47%), Positives = 95/148 (63%), Gaps = 5/148 (3%)
Query: 7 NVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAE 66
+VESF LDH V APYVR K ++ K+D+RF QPN+ M ++H+LEHL+A
Sbjct: 3 SVESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAF 62
Query: 67 IIRNHASY-----VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASN 121
IR+HA ++D SPMG QTG+YL V EI+++LE TM++ ++ TE+PA+N
Sbjct: 63 TIRSHAEKYDHFDIIDISPMGXQTGYYLVVSGETTSAEIVDLLEDTMKEAVEITEIPAAN 122
Query: 122 EKQCGWAANHTLEGAKDLARAFLDKRAE 149
EKQCG A H LEGAK L R +L + E
Sbjct: 123 EKQCGQAKLHDLEGAKRLMRFWLSQDKE 150
>pdb|1IE0|A Chain A, Crystal Structure Of Luxs
Length = 157
Score = 132 bits (332), Expect = 2e-32
Identities = 70/148 (47%), Positives = 95/148 (63%), Gaps = 5/148 (3%)
Query: 7 NVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAE 66
+VESF LDH V APYVR K ++ K+D+RF QPN+ M ++H+LEHL+A
Sbjct: 3 SVESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAF 62
Query: 67 IIRNHASY-----VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASN 121
IR+HA ++D SPMG QTG+YL V EI+++LE TM++ ++ TE+PA+N
Sbjct: 63 TIRSHAEKYDHFDIIDISPMGXQTGYYLVVSGEPTSAEIVDLLEDTMKEAVEITEIPAAN 122
Query: 122 EKQCGWAANHTLEGAKDLARAFLDKRAE 149
EKQCG A H LEGAK L R +L + E
Sbjct: 123 EKQCGQAKLHDLEGAKRLMRFWLSQDKE 150
>pdb|1INN|A Chain A, Crystal Structure Of D. Radiodurans Luxs, P21
pdb|1J6V|A Chain A, Crystal Structure Of D. Radiodurans Luxs, C2
pdb|1INN|B Chain B, Crystal Structure Of D. Radiodurans Luxs, P21
Length = 166
Score = 122 bits (306), Expect = 2e-29
Identities = 64/141 (45%), Positives = 87/141 (61%), Gaps = 1/141 (0%)
Query: 7 NVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAE 66
NVESF+LDHTKVKAPYVR+A K GD I KYD+RF QPNQ +D ++H+LEHL+A
Sbjct: 6 NVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAG 65
Query: 67 IIRNHASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATE-VPASNEKQC 125
R+H VVD SP GC+TG Y V+ + + + E ++D + +P +E +C
Sbjct: 66 YXRDHLEGVVDVSPXGCRTGXYXAVIGEPDEQGVXKAFEAALKDTAGHDQPIPGVSELEC 125
Query: 126 GWAANHTLEGAKDLARAFLDK 146
G +H L A+ AR LD+
Sbjct: 126 GNYRDHDLAAARQHARDVLDQ 146
>pdb|1JOE|A Chain A, Crystal Structure Of Autoinducer-2 Production Protein
(Luxs) From Heamophilus Influenzae
pdb|1JOE|B Chain B, Crystal Structure Of Autoinducer-2 Production Protein
(Luxs) From Heamophilus Influenzae
pdb|1JOE|C Chain C, Crystal Structure Of Autoinducer-2 Production Protein
(Luxs) From Heamophilus Influenzae
pdb|1JOE|D Chain D, Crystal Structure Of Autoinducer-2 Production Protein
(Luxs) From Heamophilus Influenzae
Length = 167
Score = 104 bits (259), Expect = 5e-24
Identities = 54/141 (38%), Positives = 85/141 (59%), Gaps = 7/141 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHTK+ AP VR+A GD I +D+RF PN++ + +H+LEHL A
Sbjct: 4 LDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATE---VPAS 120
+R+H + ++D SPMGC+TGFY++++ N ++ E +MQDVL + +P
Sbjct: 64 MRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLAR 141
N QCG H+LE A ++A+
Sbjct: 124 NIYQCGSYTEHSLEDAHEIAK 144
>pdb|1J6W|A Chain A, Crystal Structure Of Haemophilus Influenzae Luxs
pdb|1J6W|B Chain B, Crystal Structure Of Haemophilus Influenzae Luxs
Length = 175
Score = 97.1 bits (240), Expect = 8e-22
Identities = 52/141 (36%), Positives = 80/141 (55%), Gaps = 7/141 (4%)
Query: 8 VESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEI 67
++SF +DHTK AP VR+A GD I +D+RF PN++ + +H+LEHL A
Sbjct: 4 LDSFKVDHTKXNAPAVRIAKTXLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGF 63
Query: 68 IRNHAS----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATE---VPAS 120
R+H + ++D SP GC+TGFY +++ N ++ E + QDVL + +P
Sbjct: 64 XRDHLNGDSIEIIDISPXGCRTGFYXSLIGTPNEQKVSEAWLASXQDVLGVQDQASIPEL 123
Query: 121 NEKQCGWAANHTLEGAKDLAR 141
N QCG H+LE A ++A+
Sbjct: 124 NIYQCGSYTEHSLEDAHEIAK 144
>pdb|1K47|A Chain A, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|B Chain B, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|C Chain C, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|D Chain D, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|E Chain E, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|F Chain F, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
Length = 337
Score = 27.3 bits (59), Expect = 0.80
Identities = 15/64 (23%), Positives = 29/64 (44%), Gaps = 7/64 (10%)
Query: 92 LNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKDLARAFLDKRAEWS 151
L+ D YT +L L++ QD+ + + CG A + + K L + W+
Sbjct: 267 LSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGIALSFDAQSTKTL-------KNRWA 319
Query: 152 EVGV 155
++G+
Sbjct: 320 DLGI 323
>pdb|1DMS| Structure Of Dmso Reductase
Length = 781
Score = 26.6 bits (57), Expect = 1.4
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 16 TKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYV 75
T++K P VR +KGVN D R + N D + + +L+ + AE+ R +Y
Sbjct: 53 TRIKYPMVRREFLEKGVNAD-------RSTRGNGDFVRVSWDQALDLVAAEVKRVEETY- 104
Query: 76 VDWSPMGCQTGFY 88
P G G Y
Sbjct: 105 ---GPQGVFGGSY 114
>pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rhodobacter
Capsulatus
Length = 823
Score = 26.6 bits (57), Expect = 1.4
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 16 TKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYV 75
T++K P VR +KGVN D R + N D + + +L+ + AE+ R +Y
Sbjct: 95 TRIKYPMVRREFLEKGVNAD-------RSTRGNGDFVRVSWDQALDLVAAEVKRVEETY- 146
Query: 76 VDWSPMGCQTGFY 88
P G G Y
Sbjct: 147 ---GPQGVFGGSY 156
>pdb|4DMR| Reduced Dmso Reductase From Rhodobacter Capsulatus With Bound Dmso
Substrate
Length = 823
Score = 26.2 bits (56), Expect = 1.8
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 16 TKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYV 75
T++K P VR +KGVN D R + N D + + +L+ + AE+ R +Y
Sbjct: 95 TRIKYPMVRREFLEKGVNAD-------RSTRGNGDFVRVSWDQALDLVAAEVKRVEETY- 146
Query: 76 VDWSPMGCQTGFY 88
P G G Y
Sbjct: 147 ---GPSGVFGGSY 156
>pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR| Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|3DMR| Structure Of Dmso Reductase From Rhodobacter Capsulatus At Ph 7.0
pdb|2DMR| Dithionite Reduced Dmso Reductase From Rhodobacter Capsulatus
pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
Length = 823
Score = 25.8 bits (55), Expect = 2.3
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 16 TKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYV 75
T++K P VR +KGVN D R + N D + + +L+ + AE+ R +Y
Sbjct: 95 TRIKYPMVRREFLEKGVNAD-------RSTRGNGDFVRVSWDQALDLVAAEVKRVEETY- 146
Query: 76 VDWSPMGCQTGFY 88
P G G Y
Sbjct: 147 ---GPEGVFGGSY 156
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes - Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes - Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes - Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes - Structure Ii
Buffer
Length = 823
Score = 25.8 bits (55), Expect = 2.3
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 16 TKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYV 75
T++K P VR +KGVN D R + N D + + +L+ + AE+ R +Y
Sbjct: 95 TRIKYPMVRREFLEKGVNAD-------RSTRGNGDFVRVSWDQALDLVAAEVKRVEETY- 146
Query: 76 VDWSPMGCQTGFY 88
P G G Y
Sbjct: 147 ---GPEGVFGGSY 156
>pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaeroides
Dimethylsulfoxide Reductase Reveals Two Distinct
Molybdenum Coordination Environments
Length = 780
Score = 25.0 bits (53), Expect = 4.0
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 16 TKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYV 75
T++K P VR +KGVN D R + N D + + +L+ + E+ R SY
Sbjct: 53 TRIKYPMVRREFLEKGVNAD-------RSTRGNGDFVRVTWDEALDLVARELKRVQESY- 104
Query: 76 VDWSPMGCQTGFY 88
P G G Y
Sbjct: 105 ---GPTGTFGGSY 114
>pdb|1INF| Influenza Virus BLEE40 NEURAMINIDASE COMPLEXED WITH Bana113
Inhibitor
Length = 390
Score = 24.3 bits (51), Expect = 6.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 106 KTMQDVLKATEVPASNEKQCGWAANHTLEGA 136
+ ++++L V + E CG+A+N T+E A
Sbjct: 184 RIIKEILPTGRVEHTEECTCGFASNKTIECA 214
>pdb|1B9V|A Chain A, Novel Aromatic Inhibitors Of Influenza Virus Neuraminidase
Make Selective Interactions With Conserved Residues And
Water Molecules In Teh Active Site
pdb|1B9T|A Chain A, Novel Aromatic Inhibitors Of Influenza Virus Neuraminidase
Make Selective Interactions With Conserved Residues And
Water Molecules In The Active Site
pdb|1INV| Influenza BLEE40 NEURAMINIDASE (SIALIDASE) (E.C.3.2.1.18)
Complexed With Epana Inhibitor (4-Acetamido-
2,4-Dideoxy-D-Glycero-Alpha-D-Galacto-1-Octopyranosyl)
Phosphonic Acid
pdb|1IVB| Influenza Virus BLEE40 NEURAMINIDASE (SIALIDASE) (E.C.3.2.1.18)
Complexed With Bana105 Inhibitor
(4-(Acetylamino)-3-Hydroxy-5-Nitrobenzoic Acid)
pdb|1B9S|A Chain A, Novel Aromatic Inhibitors Of Influenza Virus Neuraminidase
Make Selective Interactions With Conserved Residues And
Water Molecules In The Active Site
Length = 390
Score = 24.3 bits (51), Expect = 6.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 106 KTMQDVLKATEVPASNEKQCGWAANHTLEGA 136
+ ++++L V + E CG+A+N T+E A
Sbjct: 184 RIIKEILPTGRVEHTEECTCGFASNKTIECA 214
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 912,210
Number of Sequences: 13198
Number of extensions: 33909
Number of successful extensions: 116
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 15
length of query: 155
length of database: 2,899,336
effective HSP length: 81
effective length of query: 74
effective length of database: 1,830,298
effective search space: 135442052
effective search space used: 135442052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)