BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645658|ref|NP_207834.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(370 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Relat... 27 2.8
pdb|1II7|A Chain A, Crystal Structure Of P. Furiosus Mre11 ... 27 3.7
pdb|1TFD| Transferrin (N-Terminal Half-Molecule) 27 3.7
pdb|1JNF|A Chain A, Rabbit Serum Transferrin At 2.6 A Resol... 27 3.7
pdb|1JOA| Nadh Peroxidase With Cysteine-Sulfenic Acid 27 4.8
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd (Dic... 27 4.8
pdb|1NHP| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 27 4.8
pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 27 4.8
pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Coval... 27 4.8
pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Coval... 27 4.8
pdb|1NHQ| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 27 4.8
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (... 27 4.8
pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant Wit... 27 4.8
pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mu... 27 4.8
pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1) Non-Active Form ... 27 4.8
pdb|1MAB|B Chain B, Rat Liver F1-Atpase 26 6.3
pdb|1GDV|A Chain A, Crystal Structure Of Cytochrome C6 From... 26 6.3
pdb|1IG0|B Chain B, Crystal Structure Of Yeast Thiamin Pyro... 26 8.2
pdb|3GBP| Galactose-Binding Protein Complex With Glucose 26 8.2
pdb|1GCA| GlucoseGALACTOSE-Binding Protein Complex With G... 26 8.2
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 27.3 bits (59), Expect = 2.8
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 146 KIILLTDMHVGSLLQKDFVDYIVEEVNQKEVDMVLIGGDLVDESIEKV--KSFLLP 199
KII + D H +L K +D I +E N + +IGG+ +DES+EK+ +S +LP
Sbjct: 54 KIIAIHDGHTSFVLHK--LDAI-DEANLT-YNYSIIGGEGLDESLEKISYESKILP 105
>pdb|1II7|A Chain A, Crystal Structure Of P. Furiosus Mre11 With Manganese And
Damp
pdb|1II7|B Chain B, Crystal Structure Of P. Furiosus Mre11 With Manganese And
Damp
Length = 333
Score = 26.9 bits (58), Expect = 3.7
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 145 LKIILLTDMHVG------SLLQKDFVDYI---VEEVNQKEVDMVLIGGDLVDESIEKVKS 195
+K L D+H+G +++F + +E Q+ VD +LI GDL S +
Sbjct: 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGT 60
Query: 196 F--LLPLNNLKSTHG--TFYVPGNHEYYHGIEPILSFLDTLNL 234
+ L + H F + GNH+ +L+ L+ L
Sbjct: 61 LKKAIALLQIPKEHSIPVFAIEGNHDRTQRGPSVLNLLEDFGL 103
>pdb|1TFD| Transferrin (N-Terminal Half-Molecule)
Length = 304
Score = 26.9 bits (58), Expect = 3.7
Identities = 26/97 (26%), Positives = 40/97 (40%), Gaps = 10/97 (10%)
Query: 247 INLCGVYDYFARKRQNFAPDIDKALKKRNESKPTILLAHQPKQIRSLK--ESHSVDLVL- 303
+ C V D+ A K NF + K L E P I+ + + +K +H D V
Sbjct: 6 VRWCAVNDHEASKCANFRDSMKKVLP---EDGPRIICVKKASYLDCIKAIAAHEADAVTL 62
Query: 304 -SGHTHAGQIFPFSLLVKLAQTYLHGLYKHSPTTQIY 339
+G H + P +L +A+ Y K +P T Y
Sbjct: 63 DAGLVHEAGLTPNNLKPVVAEFYGS---KENPKTFYY 96
>pdb|1JNF|A Chain A, Rabbit Serum Transferrin At 2.6 A Resolution
Length = 676
Score = 26.9 bits (58), Expect = 3.7
Identities = 26/97 (26%), Positives = 40/97 (40%), Gaps = 10/97 (10%)
Query: 247 INLCGVYDYFARKRQNFAPDIDKALKKRNESKPTILLAHQPKQIRSLK--ESHSVDLVL- 303
+ C V D+ A K NF + K L E P I+ + + +K +H D V
Sbjct: 6 VRWCAVNDHEASKCANFRDSMKKVLP---EDGPRIICVKKASYLDCIKAIAAHEADAVTL 62
Query: 304 -SGHTHAGQIFPFSLLVKLAQTYLHGLYKHSPTTQIY 339
+G H + P +L +A+ Y K +P T Y
Sbjct: 63 DAGLVHEAGLTPNNLKPVVAEFYGS---KENPKTFYY 96
>pdb|1JOA| Nadh Peroxidase With Cysteine-Sulfenic Acid
Length = 447
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 140 KLDKELKIILLTDMHVGSLLQKDFVDYIVEEVNQKEV 176
K K++ +I + D +G L K+F D + EE+ +
Sbjct: 170 KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNI 206
>pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 26.6 bits (57), Expect = 4.8
Identities = 20/65 (30%), Positives = 29/65 (43%), Gaps = 4/65 (6%)
Query: 276 ESKPTILLAHQPKQIRSLKESHSVDLVLSGHTHAGQIFPFSLLVKLAQTYLHGLYKHSPT 335
E K T+ A + + R L + V V +GH G++ P +K Q L G Y H P
Sbjct: 403 EDKLTVSRARKIQ--RFLSQPFQVAEVFTGHL--GKLVPLKETIKGFQQILAGEYDHLPE 458
Query: 336 TQIYV 340
Y+
Sbjct: 459 QAFYM 463
>pdb|1NHP| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys 42 Replaced
By Ala (C42a)
Length = 447
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 140 KLDKELKIILLTDMHVGSLLQKDFVDYIVEEVNQKEV 176
K K++ +I + D +G L K+F D + EE+ +
Sbjct: 170 KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNI 206
>pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Ser 41 Replaced
By Cys (S41c)
Length = 447
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 140 KLDKELKIILLTDMHVGSLLQKDFVDYIVEEVNQKEV 176
K K++ +I + D +G L K+F D + EE+ +
Sbjct: 170 KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNI 206
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.6 bits (57), Expect = 4.8
Identities = 20/65 (30%), Positives = 29/65 (43%), Gaps = 4/65 (6%)
Query: 276 ESKPTILLAHQPKQIRSLKESHSVDLVLSGHTHAGQIFPFSLLVKLAQTYLHGLYKHSPT 335
E K T+ A + + R L + V V +GH G++ P +K Q L G Y H P
Sbjct: 403 EDKLTVSRARKIQ--RFLSQPFQVAEVFTGHL--GKLVPLKETIKGFQQILAGEYDHLPE 458
Query: 336 TQIYV 340
Y+
Sbjct: 459 QAFYM 463
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.6 bits (57), Expect = 4.8
Identities = 20/65 (30%), Positives = 29/65 (43%), Gaps = 4/65 (6%)
Query: 276 ESKPTILLAHQPKQIRSLKESHSVDLVLSGHTHAGQIFPFSLLVKLAQTYLHGLYKHSPT 335
E K T+ A + + R L + V V +GH G++ P +K Q L G Y H P
Sbjct: 403 EDKLTVSRARKIQ--RFLSQPFQVAEVFTGHL--GKLVPLKETIKGFQQILAGEYDHLPE 458
Query: 336 TQIYV 340
Y+
Sbjct: 459 QAFYM 463
>pdb|1NHQ| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys 42 Replaced
By Ser (C42s)
Length = 447
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 140 KLDKELKIILLTDMHVGSLLQKDFVDYIVEEVNQKEV 176
K K++ +I + D +G L K+F D + EE+ +
Sbjct: 170 KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNI 206
>pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 482
Score = 26.6 bits (57), Expect = 4.8
Identities = 20/65 (30%), Positives = 29/65 (43%), Gaps = 4/65 (6%)
Query: 276 ESKPTILLAHQPKQIRSLKESHSVDLVLSGHTHAGQIFPFSLLVKLAQTYLHGLYKHSPT 335
E K T+ A + + R L + V V +GH G++ P +K Q L G Y H P
Sbjct: 403 EDKLTVSRARKIQ--RFLSQPFQVAEVFTGHL--GKLVPLKETIKGFQQILAGEYDHLPE 458
Query: 336 TQIYV 340
Y+
Sbjct: 459 QAFYM 463
>pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Leu 40 Replaced
By Cys (L40c)
Length = 447
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 140 KLDKELKIILLTDMHVGSLLQKDFVDYIVEEVNQKEV 176
K K++ +I + D +G L K+F D + EE+ +
Sbjct: 170 KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNI 206
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 140 KLDKELKIILLTDMHVGSLLQKDFVDYIVEEVNQKEV 176
K K++ +I + D +G L K+F D + EE+ +
Sbjct: 170 KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNI 206
>pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1) Non-Active Form With Cys 42
Oxidized To A Sulfonic Acid (Cys42-So3h)
pdb|2NPX| Nadh Peroxidase (E.C.1.11.1.1) With Cys 42 Oxidized To A Sulfonic
Acid (Cys42-So3h)
Length = 447
Score = 26.6 bits (57), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 140 KLDKELKIILLTDMHVGSLLQKDFVDYIVEEVNQKEV 176
K K++ +I + D +G L K+F D + EE+ +
Sbjct: 170 KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNI 206
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
Length = 479
Score = 26.2 bits (56), Expect = 6.3
Identities = 20/65 (30%), Positives = 29/65 (43%), Gaps = 4/65 (6%)
Query: 276 ESKPTILLAHQPKQIRSLKESHSVDLVLSGHTHAGQIFPFSLLVKLAQTYLHGLYKHSPT 335
E K T+ A + + R L + V V +GH G++ P +K Q L G Y H P
Sbjct: 399 EDKLTVSRARKIQ--RFLSQPFQVAEVFTGHM--GKLVPLKETIKGFQQILAGDYDHLPE 454
Query: 336 TQIYV 340
Y+
Sbjct: 455 QAFYM 459
>pdb|1GDV|A Chain A, Crystal Structure Of Cytochrome C6 From Red Alga Porphyra
Yezoensis At 1.57 A Resolution
Length = 85
Score = 26.2 bits (56), Expect = 6.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 164 VDYIVEEVNQKEVDMVLIGGDLVDESIEKVKSFLL 198
+D I +V + M GG LVDE IE +++L
Sbjct: 44 IDAITYQVQNGKNAMPAFGGRLVDEDIEDAANYVL 78
>pdb|1IG0|B Chain B, Crystal Structure Of Yeast Thiamin Pyrophosphokinase
pdb|1IG0|A Chain A, Crystal Structure Of Yeast Thiamin Pyrophosphokinase
Length = 319
Score = 25.8 bits (55), Expect = 8.2
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 137 YLDKLDKELKIILLTDMHVG---SLLQKDFVDY------IVEEVNQKEVDMV-LIGGDLV 186
YLD D+ L+I L + +G SL +K + Y I+++ Q D + +
Sbjct: 78 YLDD-DETLRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTIIKQTTQYSTDFTKCVNLISL 136
Query: 187 DESIEKVKSFLLPLNNLKSTHGTFYVPGNHEYYHGIEPILSFLDTLNLTILGNECVHLGG 246
+ + +S + +NL+S HG G H Y+ + L F +++L LGG
Sbjct: 137 HFNSPEFRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLVFSKVTPISLLA-----LGG 191
Query: 247 I 247
I
Sbjct: 192 I 192
>pdb|3GBP| Galactose-Binding Protein Complex With Glucose
Length = 305
Score = 25.8 bits (55), Expect = 8.2
Identities = 12/43 (27%), Positives = 23/43 (52%)
Query: 262 NFAPDIDKALKKRNESKPTILLAHQPKQIRSLKESHSVDLVLS 304
NF + KA++K +S P + L Q K++ +D++L+
Sbjct: 13 NFMSVVRKAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLA 55
>pdb|1GCA| GlucoseGALACTOSE-Binding Protein Complex With Galactose
pdb|1GCG| GalactoseGLUCOSE-Binding Protein (Closed, Unliganded Form)
Length = 309
Score = 25.8 bits (55), Expect = 8.2
Identities = 12/43 (27%), Positives = 23/43 (52%)
Query: 262 NFAPDIDKALKKRNESKPTILLAHQPKQIRSLKESHSVDLVLS 304
NF + KA++K +S P + L Q K++ +D++L+
Sbjct: 15 NFMSVVRKAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLA 57
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.326 0.144 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,054,367
Number of Sequences: 13198
Number of extensions: 86663
Number of successful extensions: 222
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 20
length of query: 370
length of database: 2,899,336
effective HSP length: 90
effective length of query: 280
effective length of database: 1,711,516
effective search space: 479224480
effective search space used: 479224480
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)