BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645660|ref|NP_207836.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(146 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IB8|A Chain A, Solution Structure And Function Of A Co... 49 2e-07
pdb|1PPR|M Chain M, Peridinin-Chlorophyll-Protein Of Amphid... 26 1.6
pdb|1YCR|A Chain A, Mdm2 Bound To The Transactivation Domai... 26 1.6
pdb|1SEI|A Chain A, Structure Of 30s Ribosomal Protein S8 >... 26 1.6
pdb|1CKV| Structure Of The Soluble Methane Monooxygenase ... 25 2.7
pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannasch... 24 7.9
pdb|1JR2|A Chain A, Structure Of Uroporphyrinogen Iii Synth... 24 7.9
>pdb|1IB8|A Chain A, Solution Structure And Function Of A Conserved Protein
Sp14.3 Encoded By An Essential Streptococcus Pneumoniae
Gene
Length = 164
Score = 48.9 bits (115), Expect = 2e-07
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 10/141 (7%)
Query: 5 IEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVC 64
+ E + VIE+ + L D+ K +L + + P G ++L+ ++E+ISP+LD
Sbjct: 14 VREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLDTI 71
Query: 65 --DFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSADF 122
D + Y LE++S GLER LKT ++G+ + V L +QA+ K
Sbjct: 72 KPDPFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGL-----YQAIDKQKVFEGTLL 126
Query: 123 ELEDHAIKSVEYKDLKKVKTL 143
E+ + ++EY D + KT+
Sbjct: 127 AFEEDEL-TMEYMDKTRKKTV 146
>pdb|1PPR|M Chain M, Peridinin-Chlorophyll-Protein Of Amphidinium Carterae
pdb|1PPR|N Chain N, Peridinin-Chlorophyll-Protein Of Amphidinium Carterae
pdb|1PPR|O Chain O, Peridinin-Chlorophyll-Protein Of Amphidinium Carterae
Length = 312
Score = 26.2 bits (56), Expect = 1.6
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 16/83 (19%)
Query: 51 QQVSEIISPLLDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQA 110
QQ+SE P L D++ D Y+ + + +++LK +K
Sbjct: 171 QQLSEASYPFLKEIDWLSDVYMKPLPGVSAQQSLKA----------------IDKMIVMG 214
Query: 111 VLKDANDLSADFELEDHAIKSVE 133
D N L A E AI S++
Sbjct: 215 AQADGNALKAAAEAHHKAIGSID 237
>pdb|1YCR|A Chain A, Mdm2 Bound To The Transactivation Domain Of P53
Length = 109
Score = 26.2 bits (56), Expect = 1.6
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 75 VSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSADFELEDHAIKSVEY 134
+ S+G ++ T K LG+ + K E Q ++ +NDL D + S
Sbjct: 22 LKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDL----FGVPSFSV 77
Query: 135 KDLKKVKTL 143
K+ +K+ T+
Sbjct: 78 KEHRKIYTM 86
>pdb|1SEI|A Chain A, Structure Of 30s Ribosomal Protein S8
pdb|1SEI|B Chain B, Structure Of 30s Ribosomal Protein S8
Length = 130
Score = 26.2 bits (56), Expect = 1.6
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 4 KIEEKIGGVIESLGYLLYDVSLVKENEQHVLRVSLK-NPNGAV 45
KI+ +I +++ G++ D +++N+Q +LR+ LK PN V
Sbjct: 30 KIKREIAEILKREGFIR-DYEYIEDNKQGILRIFLKYGPNERV 71
>pdb|1CKV| Structure Of The Soluble Methane Monooxygenase Regulatory Protein
B
Length = 141
Score = 25.4 bits (54), Expect = 2.7
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 42 NGAVSLDICQQVSEIISPLLDVCDFIQDA-------------YILEVSSMGLERTLK 85
NG + +D C ++SE++ +V DF+ D + + MGL+R L+
Sbjct: 82 NGKIEVD-CDEISELLGRQFNVYDFLVDVSSTIGRAYTLGNKFTITSELMGLDRKLE 137
>pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77| Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 23.9 bits (50), Expect = 7.9
Identities = 23/71 (32%), Positives = 32/71 (44%), Gaps = 11/71 (15%)
Query: 80 LERTLKTPK---HFKLSLGEKVEVKLTNKESFQAVLKDANDLSADFELEDHAIKSVE-YK 135
++R K PK ++ LSL KL +KE L D ND + D ++ H K
Sbjct: 261 IKRIFKEPKVTDNYSLSL------KLPDKEGIIKFLVDENDFNYD-RVKKHVDKLYNLIA 313
Query: 136 DLKKVKTLFEW 146
+ K KTL W
Sbjct: 314 NKTKQKTLDAW 324
>pdb|1JR2|A Chain A, Structure Of Uroporphyrinogen Iii Synthase
pdb|1JR2|B Chain B, Structure Of Uroporphyrinogen Iii Synthase
Length = 286
Score = 23.9 bits (50), Expect = 7.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 68 QDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVL 112
QD YI E+ GLE TL F+ KL++ E + ++
Sbjct: 37 QDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 81
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.135 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 742,496
Number of Sequences: 13198
Number of extensions: 27144
Number of successful extensions: 41
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 7
length of query: 146
length of database: 2,899,336
effective HSP length: 80
effective length of query: 66
effective length of database: 1,843,496
effective search space: 121670736
effective search space used: 121670736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)