BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645663|ref|NP_207840.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(89 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosph... 25 1.9
pdb|7TIM|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)... 25 1.9
pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant... 25 1.9
pdb|1EA9|C Chain C, Cyclomaltodextrinase >gi|21730148|pdb|1... 24 2.4
pdb|1TPV|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)... 24 3.2
pdb|1TPC|1 Chain 1, Triosephosphate Isomerase (E.C.5.3.1.1)... 24 3.2
pdb|1TPW|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)... 24 3.2
pdb|1TPU|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)... 24 3.2
pdb|1JJE|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseud... 24 3.2
pdb|1TPB|1 Chain 1, Triosephosphate Isomerase (E.C.5.3.1.1)... 24 3.2
pdb|1JJT|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseud... 24 3.2
pdb|8TIM|A Chain A, Triose Phosphate Isomerase >gi|4558247|... 24 3.2
pdb|1DDK|A Chain A, Crystal Structure Of Imp-1 Metallo Beta... 24 3.2
pdb|1MO0|A Chain A, Structural Genomics Of Caenorhabditis E... 23 4.2
pdb|1DJ0|A Chain A, The Crystal Structure Of E. Coli Pseudo... 23 5.5
pdb|1JA1|A Chain A, Cypor-Triple Mutant >gi|15826749|pdb|1J... 23 5.5
pdb|1J9Z|A Chain A, Cypor-W677g >gi|15826745|pdb|1J9Z|B Cha... 23 5.5
pdb|1HMC|A Chain A, Human Macrophage Colony Stimulating Fac... 23 5.5
pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cy... 23 5.5
pdb|1JA0|A Chain A, Cypor-W677x >gi|15826747|pdb|1JA0|B Cha... 23 5.5
pdb|1HTI|A Chain A, Triosephosphate Isomerase (Tim) (E.C.5.... 23 7.1
pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapol... 22 9.3
>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase:
The Role Of Histidine-95
pdb|3YPI|B Chain B, Electrophilic Catalysis In Triosephosphase Isomerase:
The Role Of Histidine-95
Length = 247
Score = 24.6 bits (52), Expect = 1.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 46 RSFYVCGNCLKNGEKKLLKAVSKIKNAPKDTKNI 79
R+F+V GN NG K+ +K + + N +N+
Sbjct: 2 RTFFVGGNFKLNGSKQSIKEIVERLNTASIPENV 35
>pdb|7TIM|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Complex With
Phosphoglycolohydroxamate
pdb|7TIM|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Complex With
Phosphoglycolohydroxamate
pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9
Angstroms Resolution
pdb|1YPI|B Chain B, Structure Of Yeast Triosephosphate Isomerase At 1.9
Angstroms Resolution
pdb|2YPI|A Chain A, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5
pdb|2YPI|B Chain B, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5
Length = 247
Score = 24.6 bits (52), Expect = 1.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 46 RSFYVCGNCLKNGEKKLLKAVSKIKNAPKDTKNI 79
R+F+V GN NG K+ +K + + N +N+
Sbjct: 2 RTFFVGGNFKLNGSKQSIKEIVERLNTASIPENV 35
>pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant)
pdb|1I45|B Chain B, Yeast Triosephosphate Isomerase (Mutant)
Length = 248
Score = 24.6 bits (52), Expect = 1.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 46 RSFYVCGNCLKNGEKKLLKAVSKIKNAPKDTKNI 79
R+F+V GN NG K+ +K + + N +N+
Sbjct: 3 RTFFVGGNFKLNGSKQSIKEIVERLNTASIPENV 36
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 24.3 bits (51), Expect = 2.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 41 FDGKGRSFYVCGNCLKNGEKKLLKAVSKIKNAP 73
F+ GR+F + LKNGEK K I++ P
Sbjct: 241 FNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLP 273
>pdb|1TPV|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With His
95 Replaced By Asn And Ser 96 Replaced By Pro
(H95n,S96p) Complexed With Phosphoglycolohydroxamate
pdb|1TPV|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With His
95 Replaced By Asn And Ser 96 Replaced By Pro
(H95n,S96p) Complexed With Phosphoglycolohydroxamate
Length = 247
Score = 23.9 bits (50), Expect = 3.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 46 RSFYVCGNCLKNGEKKLLKAVSKIKNAPK 74
R F+V GN NG+KK L + N K
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAK 31
>pdb|1TPC|1 Chain 1, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Ser
96 Replaced By Pro And Glu 165 Replaced By Asp
(S96p,E165d) Complexed With Phosphoglycolohydroxamate
pdb|1TPC|2 Chain 2, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Ser
96 Replaced By Pro And Glu 165 Replaced By Asp
(S96p,E165d) Complexed With Phosphoglycolohydroxamate
Length = 247
Score = 23.9 bits (50), Expect = 3.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 46 RSFYVCGNCLKNGEKKLLKAVSKIKNAPK 74
R F+V GN NG+KK L + N K
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAK 31
>pdb|1TPW|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Ser
96 Replaced By Pro (S96p) Complexed With
Phosphoglycolohydroxamate
pdb|1TPW|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Ser
96 Replaced By Pro (S96p) Complexed With
Phosphoglycolohydroxamate
Length = 247
Score = 23.9 bits (50), Expect = 3.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 46 RSFYVCGNCLKNGEKKLLKAVSKIKNAPK 74
R F+V GN NG+KK L + N K
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAK 31
>pdb|1TPU|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With His
95 Replaced By Asn (H95n) Complexed With
Phosphoglycolohydroxamate
pdb|1TPU|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With His
95 Replaced By Asn (H95n) Complexed With
Phosphoglycolohydroxamate
Length = 247
Score = 23.9 bits (50), Expect = 3.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 46 RSFYVCGNCLKNGEKKLLKAVSKIKNAPK 74
R F+V GN NG+KK L + N K
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAK 31
>pdb|1JJE|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
pdb|1JJE|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
Length = 222
Score = 23.9 bits (50), Expect = 3.2
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 56 KNGEKKLLKAVSKIKNAP---KDTKNIITWIKER 86
K+G L+ A + + + P KDT+ ++TW ER
Sbjct: 33 KHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVER 66
>pdb|1TPB|1 Chain 1, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Glu
165 Replaced By Asp (E165d) Complexed With
Phosphoglycolohydroxamate
pdb|1TPB|2 Chain 2, Triosephosphate Isomerase (E.C.5.3.1.1) Mutant With Glu
165 Replaced By Asp (E165d) Complexed With
Phosphoglycolohydroxamate
Length = 247
Score = 23.9 bits (50), Expect = 3.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 46 RSFYVCGNCLKNGEKKLLKAVSKIKNAPK 74
R F+V GN NG+KK L + N K
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAK 31
>pdb|1JJT|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1JJT|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1DD6|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1DD6|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
Length = 228
Score = 23.9 bits (50), Expect = 3.2
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 56 KNGEKKLLKAVSKIKNAP---KDTKNIITWIKER 86
K+G L+ A + + + P KDT+ ++TW ER
Sbjct: 33 KHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVER 66
>pdb|8TIM|A Chain A, Triose Phosphate Isomerase
pdb|8TIM|B Chain B, Triose Phosphate Isomerase
pdb|1TPH|1 Chain 1, Triosephosphate Isomerase (E.C.5.3.1.1) Complexed With
Phosphoglycolohydroxamate
pdb|1TPH|2 Chain 2, Triosephosphate Isomerase (E.C.5.3.1.1) Complexed With
Phosphoglycolohydroxamate
Length = 247
Score = 23.9 bits (50), Expect = 3.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 46 RSFYVCGNCLKNGEKKLLKAVSKIKNAPK 74
R F+V GN NG+KK L + N K
Sbjct: 3 RKFFVGGNWKMNGDKKSLGELIHTLNGAK 31
>pdb|1DDK|A Chain A, Crystal Structure Of Imp-1 Metallo Beta-Lactamase From
Pseudomonas Aeruginosa
Length = 220
Score = 23.9 bits (50), Expect = 3.2
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 56 KNGEKKLLKAVSKIKNAP---KDTKNIITWIKER 86
K+G L+ A + + + P KDT+ ++TW ER
Sbjct: 32 KHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVER 65
>pdb|1MO0|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Triose
Phosphate Isomerase
pdb|1MO0|B Chain B, Structural Genomics Of Caenorhabditis Elegans: Triose
Phosphate Isomerase
Length = 275
Score = 23.5 bits (49), Expect = 4.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 43 GKGRSFYVCGNCLKNGEKKLLKAVSKIKNAPKDTKNI 79
G R F+V GN NG+ + + NA D ++
Sbjct: 20 GLTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSV 56
>pdb|1DJ0|A Chain A, The Crystal Structure Of E. Coli Pseudouridine Synthase
I At 1.5 Angstrom Resolution
pdb|1DJ0|B Chain B, The Crystal Structure Of E. Coli Pseudouridine Synthase
I At 1.5 Angstrom Resolution
Length = 264
Score = 23.1 bits (48), Expect = 5.5
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 39 MEFDGKGRSFYVCGNCLKNGEKKLLKAVSKIKNAP 73
+E+DG + N +++ ++KL KA+S++ N P
Sbjct: 10 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP 44
>pdb|1JA1|A Chain A, Cypor-Triple Mutant
pdb|1JA1|B Chain B, Cypor-Triple Mutant
Length = 622
Score = 23.1 bits (48), Expect = 5.5
Identities = 10/15 (66%), Positives = 11/15 (72%)
Query: 30 RLKSFENQIMEFDGK 44
RLKS+ENQ FD K
Sbjct: 209 RLKSYENQKPPFDAK 223
>pdb|1J9Z|A Chain A, Cypor-W677g
pdb|1J9Z|B Chain B, Cypor-W677g
Length = 622
Score = 23.1 bits (48), Expect = 5.5
Identities = 10/15 (66%), Positives = 11/15 (72%)
Query: 30 RLKSFENQIMEFDGK 44
RLKS+ENQ FD K
Sbjct: 209 RLKSYENQKPPFDAK 223
>pdb|1HMC|A Chain A, Human Macrophage Colony Stimulating Factor (Alpha Form,
Soluble)
pdb|1HMC|B Chain B, Human Macrophage Colony Stimulating Factor (Alpha Form,
Soluble)
Length = 148
Score = 23.1 bits (48), Expect = 5.5
Identities = 17/58 (29%), Positives = 28/58 (47%), Gaps = 8/58 (13%)
Query: 23 QPQKDLLRLKSFENQIMEFDGKGRSFYVCGNCLKNGEKKLLKAVSKIKNAPKDTKNII 80
Q Q+ LRLKS + E K C++ + L+ + K+KN +TKN++
Sbjct: 76 QLQELSLRLKSCFTKDYEEHDKA--------CVRTFYETPLQLLEKVKNVFNETKNLL 125
>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn- And Fad-Containing Enzymes
pdb|1AMO|B Chain B, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn- And Fad-Containing Enzymes
Length = 615
Score = 23.1 bits (48), Expect = 5.5
Identities = 10/15 (66%), Positives = 11/15 (72%)
Query: 30 RLKSFENQIMEFDGK 44
RLKS+ENQ FD K
Sbjct: 202 RLKSYENQKPPFDAK 216
>pdb|1JA0|A Chain A, Cypor-W677x
pdb|1JA0|B Chain B, Cypor-W677x
Length = 620
Score = 23.1 bits (48), Expect = 5.5
Identities = 10/15 (66%), Positives = 11/15 (72%)
Query: 30 RLKSFENQIMEFDGK 44
RLKS+ENQ FD K
Sbjct: 209 RLKSYENQKPPFDAK 223
>pdb|1HTI|A Chain A, Triosephosphate Isomerase (Tim) (E.C.5.3.1.1) Complexed
With 2-Phosphoglycolic Acid
pdb|1HTI|B Chain B, Triosephosphate Isomerase (Tim) (E.C.5.3.1.1) Complexed
With 2-Phosphoglycolic Acid
Length = 248
Score = 22.7 bits (47), Expect = 7.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 46 RSFYVCGNCLKNGEKKLLKAVSKIKNAPK 74
R F+V GN NG K+ L + NA K
Sbjct: 4 RKFFVGGNWKMNGRKQSLGELIGTLNAAK 32
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 22.3 bits (46), Expect = 9.3
Identities = 11/31 (35%), Positives = 15/31 (47%)
Query: 52 GNCLKNGEKKLLKAVSKIKNAPKDTKNIITW 82
G L+ K L K V +IK KD+ + W
Sbjct: 108 GKTLRETNKILDKVVERIKERMKDSNVKLLW 138
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,123
Number of Sequences: 13198
Number of extensions: 16921
Number of successful extensions: 52
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 22
length of query: 89
length of database: 2,899,336
effective HSP length: 65
effective length of query: 24
effective length of database: 2,041,466
effective search space: 48995184
effective search space used: 48995184
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)