BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645665|ref|NP_207842.1| hypothetical protein
[Helicobacter pylori 26695]
(140 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex 27 1.1
pdb|1EV4|A Chain A, Rat Glutathione S-Transferase A1-1: Mut... 26 1.9
pdb|1EV9|A Chain A, Rat Glutathione S-Transferase A1-1 Muta... 26 1.9
pdb|1GAK|A Chain A, Crystal Structure Of Green Abalone Sp18 25 2.5
pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl P... 24 7.4
pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Comple... 23 9.7
pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Comple... 23 9.7
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 26.6 bits (57), Expect = 1.1
Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 7 LCASYTSKSKTSEALVEVFSQLFKDFKNPTLPAIKGVYYAKGPGSFTSLK-----LTHVF 61
L SYT+ + E + VF + + P G++ G + L+ T VF
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 62 LHTLALIHDFELYSTIGFDFND------NTPILAYANKYFVSKEMESLSDFKDLKIAP 113
L +L+ + F + +TPI+ K + + +++ K+ K+AP
Sbjct: 79 LICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAP 136
>pdb|1EV4|A Chain A, Rat Glutathione S-Transferase A1-1: Mutant W21fF220Y WITH
Gso3 Bound
pdb|1EV4|D Chain D, Rat Glutathione S-Transferase A1-1: Mutant W21fF220Y WITH
Gso3 Bound
pdb|1EV4|C Chain C, Rat Glutathione S-Transferase A1-1: Mutant W21fF220Y WITH
Gso3 Bound
Length = 221
Score = 25.8 bits (55), Expect = 1.9
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 23 EVFSQLFKD-FKNPTLPAIKGVYYAKGPGSFTSLKLTHVFLHTLALI 68
E + L KD KN LPA + V + G KLT V +H L L+
Sbjct: 117 EAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNKLTRVDIHLLELL 163
>pdb|1EV9|A Chain A, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|D Chain D, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|C Chain C, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
Length = 221
Score = 25.8 bits (55), Expect = 1.9
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 23 EVFSQLFKD-FKNPTLPAIKGVYYAKGPGSFTSLKLTHVFLHTLALI 68
E + L KD KN LPA + V + G KLT V +H L L+
Sbjct: 117 EAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNKLTRVDIHLLELL 163
>pdb|1GAK|A Chain A, Crystal Structure Of Green Abalone Sp18
Length = 141
Score = 25.4 bits (54), Expect = 2.5
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 23 EVFSQLFKD---FKNPTLPAIKGVYYAKGPGSF 52
E+++ +F+D F+ P + A Y +K PG+F
Sbjct: 100 ELYADVFRDVQGFRGPKMTAAMRKYSSKDPGTF 132
>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|B Chain B, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|C Chain C, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|D Chain D, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
Length = 215
Score = 23.9 bits (50), Expect = 7.4
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 34 NPTLPAIKGVY-YAKGPGSFTSLKLTHVFLHTLALIHD 70
NP+ A+K + A+GP S S ++ VF +LA++ +
Sbjct: 19 NPSWEAVKRLNGAAEGPASIVSEQVPTVFYKSLAVLRE 56
>pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Gsh
pdb|1F3A|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Gsh
Length = 222
Score = 23.5 bits (49), Expect = 9.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 23 EVFSQLFKD-FKNPTLPAIKGVYYAKGPGSFTSLKLTHVFLHTLALI 68
E + L KD KN LPA + V + G +LT V +H L ++
Sbjct: 117 EAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNRLTRVDIHLLEVL 163
>pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
pdb|1F3B|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
Length = 222
Score = 23.5 bits (49), Expect = 9.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 23 EVFSQLFKD-FKNPTLPAIKGVYYAKGPGSFTSLKLTHVFLHTLALI 68
E + L KD KN LPA + V + G +LT V +H L ++
Sbjct: 117 EAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNRLTRVDIHLLEVL 163
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.139 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 834,294
Number of Sequences: 13198
Number of extensions: 31619
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 7
length of query: 140
length of database: 2,899,336
effective HSP length: 79
effective length of query: 61
effective length of database: 1,856,694
effective search space: 113258334
effective search space used: 113258334
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)