BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644736|ref|NP_206906.1| cystathionine
gamma-synthase (metB) [Helicobacter pylori 26695]
(380 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta... 322 6e-89
pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trich... 314 9e-87
pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From... 298 9e-82
pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-P... 294 1e-80
pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicot... 260 2e-70
pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Esc... 188 1e-48
pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Esc... 186 5e-48
pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein... 37 0.004
pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotran... 37 0.004
pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus... 32 0.16
pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotra... 32 0.16
pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotra... 32 0.16
pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus... 32 0.16
pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of P... 28 1.7
pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase 28 1.7
pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH T... 28 1.7
pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue 27 2.9
>pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 322 bits (824), Expect = 6e-89
Identities = 158/357 (44%), Positives = 236/357 (65%)
Query: 20 AVSVPIYQTSTYRQDAIGRHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIH 79
A+S P+YQT+T++Q + + Y+Y+RSGNPTR ALE L+A L+ + F F SG+A +
Sbjct: 103 AMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALS 162
Query: 80 AVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSCTIIDTSDISQIKKAIKPNTKALY 139
AV L+++G+ ++ GDDVYGG+ RL +QV+ ++G+ ++T+ + ++ AI P TK ++
Sbjct: 163 AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVW 222
Query: 140 LETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLGG 199
LE+P+NP +I+D+ + + +A G L +VDN+ +P PL LGADIV HS TK++ G
Sbjct: 223 LESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAG 282
Query: 200 HSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCV 259
HSDV+AG++ E LA+E+ F QN+ G L P D WL RGIKT+ LR+E Q+NA +
Sbjct: 283 HSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKI 342
Query: 260 AEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFIL 319
A +L HP+V++VYY GLP HP + L Q +G + SF + + + VE+ K F +
Sbjct: 343 AMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSI 402
Query: 320 GESLGGVESLVGIPAFMTHACIPKTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAF 376
S G V+SL+ +P FM+HA IP REA G+ + LVR+S GIE DL+ DL+ AF
Sbjct: 403 AVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAF 459
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 314 bits (805), Expect = 9e-87
Identities = 174/386 (45%), Positives = 238/386 (61%), Gaps = 13/386 (3%)
Query: 1 MRMQTKLIHGGISEDATTGAVSVPIYQTSTYRQDAI--------GRHKGYEYSRSGNPTR 52
M T IH +D GA PIYQTST+ D G+ GY Y+R GNPT
Sbjct: 6 MTPATACIHANPQKDQF-GAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTV 64
Query: 53 FALEELIADLEGGVKGFAFASGLAGIHA-VFSLLQSGDHVLLGDDVYGGTFRLFNQVLVK 111
LE IA LE A +SG+ I A V ++L++GDH++ + +YG T LF L K
Sbjct: 65 SNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTK 124
Query: 112 NGLSCTIIDTSDISQIKKAIKPNTKALYLETPSNPLLKITDLAQ-CASVAKDHGLLTIVD 170
G+ I+T+ ++KK +KPNTK +Y ETP+NP LKI D+ + C G+L I D
Sbjct: 125 FGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIAD 184
Query: 171 NTFATPYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQ-EIAFFQNAIGGV 229
NTF +P NP+ G D+V HS TKY+ GH+DVVAGL+ + L Q + ++ G V
Sbjct: 185 NTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSV 244
Query: 230 LGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQ 289
+ P D+WL+ RG+ TL +RM+A +NA+ VAE+L+ HP VE+VYYPG H +++AKKQ
Sbjct: 245 ISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQ 304
Query: 290 MRGFSGMLSFTLKNDSE-AVAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKTQREA 348
MR + M++F LK+ E A +++LKL L SLGG ESL+ PA MTHA +PK +REA
Sbjct: 305 MRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREA 364
Query: 349 AGIRDGLVRLSVGIEHEQDLLEDLEQ 374
AGI DG++RLSVGIE +L+ D +Q
Sbjct: 365 AGITDGMIRLSVGIEDADELIADFKQ 390
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 298 bits (762), Expect = 9e-82
Identities = 155/377 (41%), Positives = 234/377 (61%), Gaps = 2/377 (0%)
Query: 2 RMQTKLIHGGISEDATTGAVSVPIYQTSTYRQDAIGRHKGYEYSRSGNPTRFALEELIAD 61
+ T + G+++D G V PI+ +STY + ++YSR GNPTR ++ +A+
Sbjct: 4 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAE 63
Query: 62 LEGGVKGFAFASGLAGIHAVFSL-LQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSCTIID 120
LEGG +G++ IH V ++ L+ GD ++ D YGG++RLF+ + + +D
Sbjct: 64 LEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123
Query: 121 TSDISQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQN 180
D ++ A+ K + +E+PSNPLL++ D+A+ +A++ G +++VDNTF +P QN
Sbjct: 124 QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN 183
Query: 181 PLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQR 240
PL LGAD+V HS T YL GHSDVVAG+V + + E+A++ N IG G DS+LL R
Sbjct: 184 PLALGADLVLHSCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR 243
Query: 241 GIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFT 300
G++TL RME Q+NA + ++L+ P V+++Y+P LP + +E+A +Q +GF MLSF
Sbjct: 244 GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFE 303
Query: 301 LKNDSEAV-AFVESLKLFILGESLGGVESLVGIPAFMTHACIPKTQREAAGIRDGLVRLS 359
L D + + F+ L LF L ESLGGVESL+ A MTHA + R AAGI + L+R+S
Sbjct: 304 LDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRIS 363
Query: 360 VGIEHEQDLLEDLEQAF 376
GIE +DL+ DLE F
Sbjct: 364 TGIEDGEDLIADLENGF 380
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
Length = 398
Score = 294 bits (753), Expect = 1e-80
Identities = 165/383 (43%), Positives = 230/383 (59%), Gaps = 13/383 (3%)
Query: 5 TKLIHGGISEDATTGAVSVPIYQTSTYRQDAI--------GRHKGYEYSRSGNPTRFALE 56
T+ IH G GA+ P+YQT+T+ + G G+ YSR NPT LE
Sbjct: 12 TRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLE 71
Query: 57 ELIADLEGGVKGFAFASGLAGIHA-VFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLS 115
+A LEGG G A ASG+ I + +++LL+ GD VLLG+ +YG TF + + + G+
Sbjct: 72 ARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVK 131
Query: 116 CTIIDTSDISQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175
+D +D+ ++ A+ P T+ +Y E+P+NP + + D+A A +A+ HG +VDNT+ T
Sbjct: 132 LRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCT 191
Query: 176 PYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAF--FQNAIGGVLGPQ 233
PY Q PL LGAD+V HS T YL GH D+ AG+V ++AL I ++ G VL P
Sbjct: 192 PYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTGAVLSPH 250
Query: 234 DSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGF 293
D+ LL RGIKTL LRM+ H NA +AEFL + P+VE ++YPGL + P Y LA++QM
Sbjct: 251 DAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQP 310
Query: 294 SGMLSFTLKNDSEA-VAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKTQREAAGIR 352
GM++F LK A F+ +L+LF SLG ESL PA MTH+ +R GI
Sbjct: 311 GGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGIS 370
Query: 353 DGLVRLSVGIEHEQDLLEDLEQA 375
+GLVRLSVG+E DLL D++QA
Sbjct: 371 EGLVRLSVGLEDIDDLLADVQQA 393
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 260 bits (664), Expect = 2e-70
Identities = 150/385 (38%), Positives = 215/385 (54%), Gaps = 14/385 (3%)
Query: 8 IHGG--ISEDATTGAVSVPIYQTSTYRQDAIG--------RHKGYEYSRSGNPTRFALEE 57
IH G + T A++ P+ TS Y + R +EY R GNPT LEE
Sbjct: 62 IHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEE 121
Query: 58 LIADLEGGVKGFAFASGL-AGIHAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSC 116
I+ LEG ASG+ A + +L+ +G H++ D Y T +L K G++
Sbjct: 122 KISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITA 181
Query: 117 TIIDTSDISQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175
T+ID +D+ ++ A+ L+ E+P+NP L+ D+ + + + G L +D TFAT
Sbjct: 182 TVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFAT 241
Query: 176 PYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235
P Q L LGAD+V HS TK+LGGH+DV+AG ++ + L EI + +GG L P +
Sbjct: 242 PLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLK-LVSEIRNLHHILGGALNPNAA 300
Query: 236 WLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSG 295
+L+ RG+KTL LR++ AL +AE LE HPKV VYYPGL +HP + +AKKQM GF G
Sbjct: 301 YLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGG 360
Query: 296 MLSFTLKNDSEAVA-FVESLKLFILGESLGGVESLVGIPAFMTHACIPKTQREAAGIRDG 354
+SF + D A FV++LK+ + S GG ES+V PA M++ + ++ R GI D
Sbjct: 361 AVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDN 420
Query: 355 LVRLSVGIEHEQDLLEDLEQAFAKI 379
LVR S G+E DL D+ QA I
Sbjct: 421 LVRFSFGVEDFDDLKADILQALDSI 445
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 188 bits (477), Expect = 1e-48
Identities = 124/397 (31%), Positives = 210/397 (52%), Gaps = 26/397 (6%)
Query: 2 RMQTKLIHGGISEDATTGAVSVPIYQTSTYRQDAIGRHKGYE---------YSRSGNPTR 52
++ T+L++ G S+ T GAV+ I + S+ D++ K Y R G T
Sbjct: 5 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTH 64
Query: 53 FALEELIADLEGGVKGFAFASGLAGI-HAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVK 111
F+L++ + +LEGG F G A + +++ + ++ GDHVL+ + Y + +++L K
Sbjct: 65 FSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK 124
Query: 112 NGLSCTIIDTSDISQIKKAIKPNTKALYLETPSNPLLKITDL----AQCASVAKDHGLLT 167
G++ + D + I K ++PNTK ++LE+P + +++ D+ A SV D +
Sbjct: 125 LGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPD--AII 182
Query: 168 IVDNTFATPYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNA-- 225
++DNT+A L G D+ + TKYL GHSD + G N Q +NA
Sbjct: 183 MIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQ---LRENAYL 239
Query: 226 IGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYEL 285
+G ++ +++ RG++TLG+R+ H +++L VAE+L +HP+V RV +P LP +E
Sbjct: 240 MGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEF 299
Query: 286 AKKQMRGFSGMLSFTLK---NDSEAVAFVESLKLFILGESLGGVESLVGIPAFMTHACIP 342
K+ G SG+ SF LK N+ E ++++ LF + S GG ESL+ + H
Sbjct: 300 WKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLI-LANQPEHIAAI 358
Query: 343 KTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKI 379
+ Q E L+RL +G+E DL+ DL+ FA+I
Sbjct: 359 RPQGE-IDFSGTLIRLHIGLEDVDDLIADLDAGFARI 394
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 186 bits (471), Expect = 5e-48
Identities = 123/397 (30%), Positives = 209/397 (51%), Gaps = 26/397 (6%)
Query: 2 RMQTKLIHGGISEDATTGAVSVPIYQTSTYRQDAIGRHKGYE---------YSRSGNPTR 52
++ T+L++ G S+ T GAV+ I + S+ D++ K Y R G T
Sbjct: 5 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTH 64
Query: 53 FALEELIADLEGGVKGFAFASGLAGI-HAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVK 111
F+L++ + +LEGG F G A + +++ + ++ GDHVL+ + Y + +++L K
Sbjct: 65 FSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK 124
Query: 112 NGLSCTIIDTSDISQIKKAIKPNTKALYLETPSNPLLKITDL----AQCASVAKDHGLLT 167
G++ + D + I K ++PNTK ++LE+P + +++ D+ A SV D +
Sbjct: 125 LGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPD--AII 182
Query: 168 IVDNTFATPYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNA-- 225
++DNT+A L G D+ + T YL GHSD + G N Q +NA
Sbjct: 183 MIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVCNARCWEQ---LRENAYL 239
Query: 226 IGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYEL 285
+G ++ +++ RG++TLG+R+ H +++L VAE+L +HP+V RV +P LP +E
Sbjct: 240 MGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEF 299
Query: 286 AKKQMRGFSGMLSFTLK---NDSEAVAFVESLKLFILGESLGGVESLVGIPAFMTHACIP 342
K+ G SG+ SF LK N+ E ++++ LF + S GG ESL+ + H
Sbjct: 300 WKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLI-LANQPEHIAAI 358
Query: 343 KTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKI 379
+ Q E L+RL +G+E DL+ DL+ FA+I
Sbjct: 359 RPQGE-IDFSGTLIRLHIGLEDVDDLIADLDAGFARI 394
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-Form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-Form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 37.0 bits (84), Expect = 0.004
Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 25/145 (17%)
Query: 123 DISQIKKAIKPNTKALYLETPSNP---LLKITDLAQCASVAKDHGLLTIVDNTFATPYYQ 179
++ ++KK + T+AL + +P NP +L DL + A +H L+ I D + Y
Sbjct: 149 NVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY- 207
Query: 180 NPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQ 239
D H L G + +T N ++ A +G V P SW+++
Sbjct: 208 -------DDARHYSIASLDG---MFERTITVN--GFSKTFAMTGWRLGFVAAP--SWIIE 253
Query: 240 RGIKTLGLRMEAHQKNALCVAEFLE 264
R +K NA C F++
Sbjct: 254 RMVK-------FQMYNATCPVTFIQ 271
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 37.0 bits (84), Expect = 0.004
Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 25/145 (17%)
Query: 123 DISQIKKAIKPNTKALYLETPSNP---LLKITDLAQCASVAKDHGLLTIVDNTFATPYYQ 179
++ ++KK + T+AL + +P NP +L DL + A +H L+ I D + Y
Sbjct: 148 NVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY- 206
Query: 180 NPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQ 239
D H L G + +T N ++ A +G V P SW+++
Sbjct: 207 -------DDARHYSIASLDG---MFERTITVN--GFSKTFAMTGWRLGFVAAP--SWIIE 252
Query: 240 RGIKTLGLRMEAHQKNALCVAEFLE 264
R +K NA C F++
Sbjct: 253 RMVK-------FQMYNATCPVTFIQ 270
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 31.6 bits (70), Expect = 0.16
Identities = 17/60 (28%), Positives = 30/60 (49%), Gaps = 3/60 (5%)
Query: 123 DISQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ 179
D ++++AI P TKAL + +P+NP + L A +A +H + D + Y+
Sbjct: 153 DPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYE 212
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
Length = 385
Score = 31.6 bits (70), Expect = 0.16
Identities = 17/60 (28%), Positives = 30/60 (49%), Gaps = 3/60 (5%)
Query: 123 DISQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ 179
D ++++AI P TKAL + +P+NP + L A +A +H + D + Y+
Sbjct: 153 DPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYE 212
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
Length = 385
Score = 31.6 bits (70), Expect = 0.16
Identities = 17/60 (28%), Positives = 30/60 (49%), Gaps = 3/60 (5%)
Query: 123 DISQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ 179
D ++++AI P TKAL + +P+NP + L A +A +H + D + Y+
Sbjct: 153 DPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYE 212
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 31.6 bits (70), Expect = 0.16
Identities = 17/60 (28%), Positives = 30/60 (49%), Gaps = 3/60 (5%)
Query: 123 DISQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ 179
D ++++AI P TKAL + +P+NP + L A +A +H + D + Y+
Sbjct: 153 DPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYE 212
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 28.1 bits (61), Expect = 1.7
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 36 IGRHKGYEYSRSGNPTRFALEELIADL--EGGVKGFAFASGLAGIHAVFSLLQSGDHVLL 93
+G+ G G RF E +I EGG+ GFA +AG+ V + +Q D + L
Sbjct: 78 VGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPV-AEIQFVDFIWL 136
Query: 94 GDD 96
G D
Sbjct: 137 GAD 139
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 28.1 bits (61), Expect = 1.7
Identities = 25/122 (20%), Positives = 48/122 (38%), Gaps = 6/122 (4%)
Query: 83 SLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSCTIID-----TSDISQIKKAIKPNTKA 137
S +++GD++++ + + + + G +I T + + T+
Sbjct: 110 SNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRL 169
Query: 138 LYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQ-NPLLLGADIVAHSGTKY 196
L + SN L LA+ ++A HG +VD A ++ + L D SG K
Sbjct: 170 LAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKL 229
Query: 197 LG 198
G
Sbjct: 230 YG 231
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
Persulfide Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
Perselenide Intermediate (Residue Csz)
Length = 406
Score = 28.1 bits (61), Expect = 1.7
Identities = 25/122 (20%), Positives = 48/122 (38%), Gaps = 6/122 (4%)
Query: 83 SLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSCTIID-----TSDISQIKKAIKPNTKA 137
S +++GD++++ + + + + G +I T + + T+
Sbjct: 108 SNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRL 167
Query: 138 LYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQ-NPLLLGADIVAHSGTKY 196
L + SN L LA+ ++A HG +VD A ++ + L D SG K
Sbjct: 168 LAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKL 227
Query: 197 LG 198
G
Sbjct: 228 YG 229
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 27.3 bits (59), Expect = 2.9
Identities = 25/122 (20%), Positives = 49/122 (39%), Gaps = 6/122 (4%)
Query: 83 SLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSCTIIDTSDISQIKKAIKPN-----TKA 137
S +++GD++++ + + + + G +I + ++ P T+
Sbjct: 108 SNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDAATRL 167
Query: 138 LYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQ-NPLLLGADIVAHSGTKY 196
L + SN L LA+ ++A HG +VD A ++ + L D SG K
Sbjct: 168 LAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKL 227
Query: 197 LG 198
G
Sbjct: 228 YG 229
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,238,442
Number of Sequences: 13198
Number of extensions: 98099
Number of successful extensions: 276
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 18
length of query: 380
length of database: 2,899,336
effective HSP length: 90
effective length of query: 290
effective length of database: 1,711,516
effective search space: 496339640
effective search space used: 496339640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)