BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645667|ref|NP_207844.1| hypothetical protein
[Helicobacter pylori 26695]
         (217 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1HF2|B  Chain B, Crystal Structure Of The Bacterial Cell...    45  8e-06
pdb|1CX4|A  Chain A, Crystal Structure Of A Deletion Mutant ...    25  5.3
pdb|1M7Z|A  Chain A, Structure Of Nitric Oxide Synthase Heme...    25  6.9
pdb|1KKD|A  Chain A, Solution Structure Of The Calmodulin Bi...    25  9.0
pdb|1M1C|A  Chain A, Structure Of The L-A Virus >gi|24158917...    25  9.0
pdb|1G4Y|B  Chain B, 1.60 A Crystal Structure Of The Gating ...    25  9.0

>pdb|1HF2|B Chain B, Crystal Structure Of The Bacterial Cell-Division Inhibitor
           Minc From T. Maritima
 pdb|1HF2|C Chain C, Crystal Structure Of The Bacterial Cell-Division Inhibitor
           Minc From T. Maritima
 pdb|1HF2|A Chain A, Crystal Structure Of The Bacterial Cell-Division Inhibitor
           Minc From T. Maritima
 pdb|1HF2|D Chain D, Crystal Structure Of The Bacterial Cell-Division Inhibitor
           Minc From T. Maritima
          Length = 210

 Score = 44.7 bits (104), Expect = 8e-06
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 80  LFLETNRVLNGRHIKTMPLKDETDHPKPNHSKTEPKTTIYERHIRSGEEIYSTNHLIFLG 139
           L LE +++L G  ++      E D    + +  E    + +R+IRSG+ +  +  +I  G
Sbjct: 69  LGLEVSQILVGSTVEGK----ENDLKVQSRTTVESTGKVIKRNIRSGQTVVHSGDVIVFG 124

Query: 140 NIHNGAKIISEGCVSVYGVCEGAI 163
           N++ GA+I++ G V V+G  +G I
Sbjct: 125 NVNKGAEILAGGSVVVFGKAQGNI 148



>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
           Regulatory Subunit Of Camp-Dependent Protein Kinase
          Length = 305

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 118 IYERHIRSGEEIYSTNHLIFLGNIHNGAKIISEGCVSVYGVCEGAIVCFG 167
           ++E+ ++ GE      H+I  G+  +   +I  G   +Y  C+G   C G
Sbjct: 57  MFEKLVKEGE------HVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVG 100



>pdb|1M7Z|A Chain A, Structure Of Nitric Oxide Synthase Heme Protein From
           Bacillus Subtilis With N-Hydroxy-Arginine And
           Tetrahydrofolate Bound
          Length = 361

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 80  LFLETNRVLNGRHIKTMP-LKDETDH---PKPNHSKTEPKTTIYERHIRSGEEIYSTNHL 135
           LF  +  V++ R ++T   ++D   H      N+ K  P  TI+    +  +++   NH 
Sbjct: 70  LFWNSLNVIDRRDVRTKEDVRDALFHHIETATNNGKIRPSITIFPPEEKGEKQVEIWNHQ 129

Query: 136 IFLGNIHNGAKIISEGCVSVYGVCE 160
           +     + G +I      S+   CE
Sbjct: 130 LIRYAGYEGERIGDPASRSLTAACE 154



>pdb|1KKD|A Chain A, Solution Structure Of The Calmodulin Binding Domain
           (Cambd) Of Small Conductance Ca2+-Activated Potassium
           Channels (Sk2)
          Length = 102

 Score = 24.6 bits (52), Expect = 9.0
 Identities = 21/88 (23%), Positives = 38/88 (42%), Gaps = 9/88 (10%)

Query: 20  RIVMLKTNQKNVHAF----EIEKQEPEAVIGFLEKNHALLQYFLIIFKYDIESEVKAVLR 75
           R + L   +K+VH F    ++ K+   A    L +   + +   ++ K D      A +R
Sbjct: 3   RKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKNTKLVKKID-----HAKVR 57

Query: 76  KHQLLFLETNRVLNGRHIKTMPLKDETD 103
           KHQ  FL+    L    ++   L D+ +
Sbjct: 58  KHQRKFLQAIHQLRSVKMEQRKLNDQAN 85



>pdb|1M1C|A Chain A, Structure Of The L-A Virus
 pdb|1M1C|B Chain B, Structure Of The L-A Virus
          Length = 680

 Score = 24.6 bits (52), Expect = 9.0
 Identities = 14/47 (29%), Positives = 27/47 (56%), Gaps = 3/47 (6%)

Query: 113 EPKTTIYERHIRSG-EEIY--STNHLIFLGNIHNGAKIISEGCVSVY 156
           E  TTIY+ H+++G   +Y  S  +L ++  +  G ++I+ G +  Y
Sbjct: 588 EVSTTIYDTHVQAGAHAVYHASRINLDYVKPVSTGIQVINAGELKNY 634



>pdb|1G4Y|B Chain B, 1.60 A Crystal Structure Of The Gating Domain From Small
           Conductance Potassium Channel Complexed With Calcium-
           Calmodulin
          Length = 101

 Score = 24.6 bits (52), Expect = 9.0
 Identities = 21/88 (23%), Positives = 38/88 (42%), Gaps = 9/88 (10%)

Query: 20  RIVMLKTNQKNVHAF----EIEKQEPEAVIGFLEKNHALLQYFLIIFKYDIESEVKAVLR 75
           R + L   +K+VH F    ++ K+   A    L +   + +   ++ K D      A +R
Sbjct: 3   RKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKNTKLVKKID-----HAKVR 57

Query: 76  KHQLLFLETNRVLNGRHIKTMPLKDETD 103
           KHQ  FL+    L    ++   L D+ +
Sbjct: 58  KHQRKFLQAIHQLRSVKMEQRKLNDQAN 85



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,188,554
Number of Sequences: 13198
Number of extensions: 45529
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 6
length of query: 217
length of database: 2,899,336
effective HSP length: 85
effective length of query: 132
effective length of database: 1,777,506
effective search space: 234630792
effective search space used: 234630792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)