BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645668|ref|NP_207845.1| hypothetical protein
[Helicobacter pylori 26695]
(422 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1PD2|1 Chain 1, Crystal Structure Of Hematopoietic Pros... 30 0.51
pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Me... 29 1.1
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inh... 29 1.1
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed... 27 3.3
pdb|1IQ4|A Chain A, 5s-Rrna Binding Ribosomal Protein L5 Fr... 26 7.4
>pdb|1PD2|1 Chain 1, Crystal Structure Of Hematopoietic Prostaglandin D
Synthase Complex With Glutathione
pdb|1PD2|2 Chain 2, Crystal Structure Of Hematopoietic Prostaglandin D
Synthase Complex With Glutathione
Length = 199
Score = 30.0 bits (66), Expect = 0.51
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 137 PSIAYGGSAIVVFEALDKNLSQAFVRVKKKDFEAFRLLEFKQRNV---------FIALVP 187
P++ +G ++ E L + S A R K+ + E +Q V F++L P
Sbjct: 44 PTLPFGKIPVLEVEGLTLHQSLAIARYLTKNTDLAGKTELEQCQVDAVVDTLDDFMSLFP 103
Query: 188 WSYKNKDFKAFIVAKDKAYNFNTAPLLFKRKIHRLREKD 226
W+ +N+D K++ +N LL ++ H L++ D
Sbjct: 104 WAEENQDL------KERTFN----DLLTRQAPHLLKDLD 132
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
Length = 327
Score = 28.9 bits (63), Expect = 1.1
Identities = 13/42 (30%), Positives = 26/42 (60%), Gaps = 3/42 (7%)
Query: 14 SFSLNSKEGALNDNDGTLFWDLKKPI---KIKIVAPKGIKRY 52
+FS++ K+ D+ GTLF+D+ + + K K+V + +K +
Sbjct: 83 AFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNF 124
>pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|9MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|1HMY| Hhai Dna (Cytosine-C5-)-Methyltransferase (E.C.2.1.1.37) Complex
With S-Adenosyl-L-Methionine
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
Length = 327
Score = 28.9 bits (63), Expect = 1.1
Identities = 13/42 (30%), Positives = 26/42 (60%), Gaps = 3/42 (7%)
Query: 14 SFSLNSKEGALNDNDGTLFWDLKKPI---KIKIVAPKGIKRY 52
+FS++ K+ D+ GTLF+D+ + + K K+V + +K +
Sbjct: 83 AFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNF 124
>pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr
Region Of Human Pex5
pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr
Region Of Human Pex5
Length = 368
Score = 27.3 bits (59), Expect = 3.3
Identities = 23/73 (31%), Positives = 33/73 (44%), Gaps = 6/73 (8%)
Query: 32 FWD-----LKKPIKIKIVAPKGIKRYD-LKVTTQDNLILYEKENLVLDKPKSLEVPLTRP 85
FWD L++ K A + YD L T D +E+EN + D P+ E L R
Sbjct: 16 FWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRL 75
Query: 86 EIMGLEDKCLLYE 98
+ L + LL+E
Sbjct: 76 QEGDLPNAVLLFE 88
>pdb|1IQ4|A Chain A, 5s-Rrna Binding Ribosomal Protein L5 From Bacillus
Stearothermophilus
pdb|1IQ4|B Chain B, 5s-Rrna Binding Ribosomal Protein L5 From Bacillus
Stearothermophilus
Length = 179
Score = 26.2 bits (56), Expect = 7.4
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 239 QEKFQNDTEQALLERFSNARPKDLEKIQKIALEQG 273
+EK+ N+ AL+ +F+ + KI+KI + G
Sbjct: 5 KEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMG 39
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.140 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,429,028
Number of Sequences: 13198
Number of extensions: 105526
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 5
length of query: 422
length of database: 2,899,336
effective HSP length: 91
effective length of query: 331
effective length of database: 1,698,318
effective search space: 562143258
effective search space used: 562143258
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)