BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645669|ref|NP_207846.1| hypothetical protein
[Helicobacter pylori 26695]
         (314 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1K9X|A  Chain A, Structure Of Pyrococcus Furiosus Carbox...    30  0.27
pdb|1SAT|    Molecule: Serratia Protease Synonym: Serralysin...    30  0.27
pdb|1SMP|A  Chain A, Mol_id: 1; Molecule: Serratia Metallo P...    30  0.36
pdb|1AF0|A  Chain A, Serratia Protease In Complex With Inhib...    30  0.36
pdb|1SRP|    Serratia Protease (E.C.3.4.24.40) (Serralysin) ...    30  0.47
pdb|1FFY|A  Chain A, Insights Into Editing From An Ile-Trna ...    29  0.61
pdb|1K32|A  Chain A, Crystal Structure Of The Tricorn Protea...    25  8.8

>pdb|1K9X|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
 pdb|1K9X|B Chain B, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
 pdb|1K9X|C Chain C, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
 pdb|1K9X|D Chain D, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
 pdb|1KA2|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Mg
 pdb|1KA4|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Nat-Pb
          Length = 499

 Score = 30.4 bits (67), Expect = 0.27
 Identities = 16/52 (30%), Positives = 32/52 (60%), Gaps = 5/52 (9%)

Query: 16  GLQATDYDNLEEENQQLDEKINHLKQQLTEKGVSPKE--MDKDKFEEEYINR 65
           GL+  D + + E    L++K+  L  ++ E+G  P+E  ++K+K+E E++ R
Sbjct: 166 GLRTRDVEKMFEV---LEKKLKPLLDKILEEGKVPREHPLEKEKYEREWMER 214



>pdb|1SAT|   Molecule: Serratia Protease Synonym: Serralysin, Major Metallo
           Protease From Serratia Marcescens
          Length = 471

 Score = 30.4 bits (67), Expect = 0.27
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 23/111 (20%)

Query: 156 DLLLGGGALKEDAIKQPVGSFIYVLGAVNTDL--------------------LFDMPLDF 195
           D+L GGG    D +    G  I+V  A +                        FD   + 
Sbjct: 356 DVLFGGGGA--DELWGGAGKDIFVFSAASDSAPGASDWIRDFQKGIDKIDLSFFDKEANS 413

Query: 196 KTKKHFLGVYAGF-GIGLMLYQDRPNQNGRNLVVGGYSSPNFLWKSLIEVD 245
            +  HF+  ++G  G  L+ Y    N    ++ +GG+++P+FL K + +VD
Sbjct: 414 SSFIHFVDHFSGTAGEALLSYNASSNVTDLSVNIGGHAAPDFLVKIVGQVD 464



>pdb|1SMP|A Chain A, Mol_id: 1; Molecule: Serratia Metallo Proteinase; Chain:
           A; Ec: 3.4.24.40; Mol_id: 2; Molecule: Erwinia
           Chrysanthemi Inhibitor; Chain: I; Engineered: Yes
          Length = 471

 Score = 30.0 bits (66), Expect = 0.36
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 23/111 (20%)

Query: 156 DLLLGGGALKEDAIKQPVGSFIYVLGAVN------TDLLFD-------MPLDFKTKK--- 199
           D+L GGG    D +    G  I+V  A +      +D + D       + L F  K+   
Sbjct: 356 DVLFGGGGA--DELWGGAGKDIFVFSAASDSAPGASDWIRDFQKGIDKIDLSFFNKEANS 413

Query: 200 ----HFLGVYAGF-GIGLMLYQDRPNQNGRNLVVGGYSSPNFLWKSLIEVD 245
               HF+  ++G  G  L+ Y    N    ++ +GG+ +P+FL K + +VD
Sbjct: 414 SDFIHFVDHFSGTAGEALLSYNASSNVTDLSVNIGGHQAPDFLVKIVGQVD 464



>pdb|1AF0|A Chain A, Serratia Protease In Complex With Inhibitor
          Length = 471

 Score = 30.0 bits (66), Expect = 0.36
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 23/111 (20%)

Query: 156 DLLLGGGALKEDAIKQPVGSFIYVLGAVNTDL--------------------LFDMPLDF 195
           D+L GGG    D +    G  I+V  A +                        FD   + 
Sbjct: 356 DVLFGGGGA--DELWGGAGKDIFVFSAASDSAPGASDWIRDFQKGIDKIDLSFFDKEANS 413

Query: 196 KTKKHFLGVYAGF-GIGLMLYQDRPNQNGRNLVVGGYSSPNFLWKSLIEVD 245
            +  HF+  ++G  G  L+ Y    N    ++ +GG+ +P+FL K + +VD
Sbjct: 414 SSFIHFVDHFSGTAGEALLSYNASSNVTDLSVNIGGHQAPDFLVKIVGQVD 464



>pdb|1SRP|   Serratia Protease (E.C.3.4.24.40) (Serralysin) Complexed With Zinc
          Length = 471

 Score = 29.6 bits (65), Expect = 0.47
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 23/111 (20%)

Query: 156 DLLLGGGALKEDAIKQPVGSFIYVLGAVN------TDLLFD-------MPLDFKTKK--- 199
           D+L GGG    D +    G  I+V  A +      +D + D       + L F  K+   
Sbjct: 356 DVLFGGGGA--DELWGGAGKDIFVFSAASDSAPGASDWIRDFQKGIDKIDLSFFNKEAQS 413

Query: 200 ----HFLGVYAGF-GIGLMLYQDRPNQNGRNLVVGGYSSPNFLWKSLIEVD 245
               HF+  ++G  G  L+ Y    N    ++ +GG+ +P+FL K + +VD
Sbjct: 414 SDFIHFVDHFSGAAGEALLSYNASNNVTDLSVNIGGHQAPDFLVKIVGQVD 464



>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
           Structure With Trna(Ile) And Mupirocin
 pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
           Structure With Trna(Ile) And Mupirocin
 pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
           Structure With Trna(Ile) And Mupirocin
          Length = 917

 Score = 29.3 bits (64), Expect = 0.61
 Identities = 19/75 (25%), Positives = 36/75 (47%), Gaps = 2/75 (2%)

Query: 39  LKQQLTEKGVSPKEMDKDKFEEEYINRSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYA 98
           ++Q LT+KGV  K+M   +F E+    +  +I  +KK+   +   +  D +  ++     
Sbjct: 101 IEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKD--FRRLGVRGDFNDPYITLKPE 158

Query: 99  YGELNLSYQGEMLDR 113
           Y    +   GEM D+
Sbjct: 159 YEAAQIRIFGEMADK 173



>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
 pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
 pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
 pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
 pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
 pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
          Length = 1045

 Score = 25.4 bits (54), Expect = 8.8
 Identities = 28/146 (19%), Positives = 61/146 (41%), Gaps = 11/146 (7%)

Query: 11  IALILGLQATD----YDNLEEENQQLDEKINHLKQQLTEKGVSPKEMDKDKFEEEYIN-- 64
           +A I G +  D    YD    + ++ +E + ++     ++      +  D+FE   ++  
Sbjct: 349 VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 408

Query: 65  RSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELN--LSYQGEMLDRYGANAPSAF 122
              P +  + +E ++  F+I+D+   +  G    +GE +  +     + D  G    +A 
Sbjct: 409 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT 468

Query: 123 KNNININAPVSMISAKFGYQKYFVSY 148
             N +  AP     +K     Y++SY
Sbjct: 469 TENSHDYAPAFDADSK---NLYYLSY 491



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.319    0.140    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,931,032
Number of Sequences: 13198
Number of extensions: 90223
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 7
length of query: 314
length of database: 2,899,336
effective HSP length: 88
effective length of query: 226
effective length of database: 1,737,912
effective search space: 392768112
effective search space used: 392768112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)