BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645670|ref|NP_207847.1| hypothetical protein
[Helicobacter pylori 26695]
(284 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1NMB|N Chain N, Mol_id: 1; Molecule: N9 Neuraminidase; ... 29 0.54
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 29 0.54
pdb|1I5P|A Chain A, Insecticidal Crystal Protein Cry2aa 27 2.0
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 27 3.5
pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydroge... 26 4.5
pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal Complex... 26 5.9
pdb|1QGI|A Chain A, Chitosanase From Bacillus Circulans 26 5.9
pdb|1FJE|B Chain B, Solution Structure Of Nucleolin Rbd12 I... 25 7.7
pdb|1FJC|A Chain A, Solution Structure Of Nucleolin Rbd2 25 7.7
>pdb|1NMB|N Chain N, Mol_id: 1; Molecule: N9 Neuraminidase; Chain: N; Ec:
3.2.1.18; Mutation: Wild Type; Mol_id: 2; Molecule: Fab
Nc10; Chain: L, H; Other_details: Resolution Of 2.5
Angstroms
Length = 470
Score = 29.3 bits (64), Expect = 0.54
Identities = 16/46 (34%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Query: 235 VLNLGVSMTLNLKHRFELALKMPPLKETSQTFL-YYFKSTNIYYIS 279
++NLG+++ L+LK + P SQT + Y+ TNI IS
Sbjct: 26 IVNLGLNIGLHLKPSCNCSRSQPEATNASQTIINNYYNETNITQIS 71
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 29.3 bits (64), Expect = 0.54
Identities = 18/69 (26%), Positives = 38/69 (54%), Gaps = 4/69 (5%)
Query: 42 DAPILLEEKRAQTLEFKEEKEAKKNIDEKSLLEEIHKKKRQLYMLK----GELHEKNESL 97
+A I EE+R+Q L+ +++K ++ +D + LEE +++L + K G++ + + +
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI 992
Query: 98 LFQRMAKNK 106
L NK
Sbjct: 993 LIMEDQNNK 1001
Score = 25.8 bits (55), Expect = 5.9
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 29 TTEGNMTEENISKDAPILLEE----KRAQTLEFKEEK-----EAKKNIDEKSLLEEIHKK 79
T E + EE +S L EE K L+ K E E + +EKS +E+ K
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR-QELEKI 1061
Query: 80 KRQLYMLKGELHEKNESLLFQ 100
KR+L +LHE+ L Q
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQ 1082
>pdb|1I5P|A Chain A, Insecticidal Crystal Protein Cry2aa
Length = 633
Score = 27.3 bits (59), Expect = 2.0
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 154 GISA--LRFYGEYLGGAMKGFKSDSLASYQTASLNIDLLMDKPIDKEKRFALGIFGGVGV 211
GISA LR Y +YL + + + + +YQTA ++ + ++ L +F V +
Sbjct: 199 GISAATLRTYRDYLRNYTRDYSNYCINTYQTAFRGLNTRLHDMLEFRTYMFLNVFEYVSI 258
Query: 212 GWNGMYQNLKEVKG 225
YQ+L G
Sbjct: 259 WSLFKYQSLMVSSG 272
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 26.6 bits (57), Expect = 3.5
Identities = 16/62 (25%), Positives = 31/62 (49%), Gaps = 4/62 (6%)
Query: 26 EENTTEGNMTEENISKDAPILLEEKRAQTLEFKEEKEAKKNIDEKSLLEEIHKKKRQLYM 85
EEN + +M +E +SKDA E +A + + K ++++ L K++ L+
Sbjct: 55 EENRVKSDMLKEKLSKDA----ENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFP 110
Query: 86 LK 87
+K
Sbjct: 111 IK 112
>pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Adp
pdb|1GJV|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Atp-Gamma-S
pdb|1GKX|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Length = 388
Score = 26.2 bits (56), Expect = 4.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 142 GLRSGYQKYFANGISALRFYGEYLGGAMK 170
G +SG F G+ R Y EYLGG+++
Sbjct: 327 GGQSGPMHGFGFGLPTSRAYAEYLGGSLQ 355
>pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 79
Score = 25.8 bits (55), Expect = 5.9
Identities = 21/66 (31%), Positives = 34/66 (50%), Gaps = 8/66 (12%)
Query: 31 EGNMTEENISKDAPILLEEKRAQTLEFKEEKEAKKNIDEKSLLEEIHKKKRQLYMLKGEL 90
EGN EN ++A + EE R + E ++EK K + EE+ + R Y LK ++
Sbjct: 9 EGN---ENAEEEAAAI-EEARREAEERRKEKHRKMEEER----EEMRQTIRDKYGLKKKV 60
Query: 91 HEKNES 96
E+ E+
Sbjct: 61 KEEPEA 66
>pdb|1QGI|A Chain A, Chitosanase From Bacillus Circulans
Length = 259
Score = 25.8 bits (55), Expect = 5.9
Identities = 14/54 (25%), Positives = 26/54 (47%), Gaps = 7/54 (12%)
Query: 195 IDKEKRFALGIFGGVGVGWNG-------MYQNLKEVKGYSQPNAFGLVLNLGVS 241
I+ E+ + +G+FG G +++ KG S P+A G + LG++
Sbjct: 53 IEDERGYTIGLFGATTGGSRDTHPDGPDLFKAYDAAKGASNPSADGALKRLGIN 106
>pdb|1FJE|B Chain B, Solution Structure Of Nucleolin Rbd12 In Complex With Snre
Rna
Length = 175
Score = 25.4 bits (54), Expect = 7.7
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 55 LEFKEEKEAKKNIDEK 70
+EFK E +A+KN++EK
Sbjct: 141 IEFKSEADAEKNLEEK 156
>pdb|1FJC|A Chain A, Solution Structure Of Nucleolin Rbd2
Length = 96
Score = 25.4 bits (54), Expect = 7.7
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 55 LEFKEEKEAKKNIDEK 70
+EFK E +A+KN++EK
Sbjct: 58 IEFKSEADAEKNLEEK 73
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.138 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,575,060
Number of Sequences: 13198
Number of extensions: 64018
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 12
length of query: 284
length of database: 2,899,336
effective HSP length: 87
effective length of query: 197
effective length of database: 1,751,110
effective search space: 344968670
effective search space used: 344968670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)