BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645671|ref|NP_207848.1| hypothetical protein
[Helicobacter pylori 26695]
(240 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna S... 30 0.19
pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydro... 29 0.55
pdb|1MFB|H Chain H, Fab Fragment (Murine Se155-4) Complex W... 27 1.6
pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase... 26 4.7
pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant... 26 4.7
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Comp... 26 4.7
pdb|1TYC| Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) M... 25 6.1
pdb|1TYD|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.... 25 6.1
pdb|1MFA| Fv Fragment (Murine Se155-4) Complex With The T... 25 6.1
pdb|1TYA|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.... 25 6.1
pdb|1TYB|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.... 25 6.1
pdb|4TS1|A Chain A, Des-(Ile 318-Arg 417)-Tyrosyl-Transfer ... 25 6.1
pdb|2TS1| Tyrosyl-Transfer RNA Synthetase (E.C.6.1.1.1) >... 25 6.1
pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotox... 25 8.0
pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furios... 25 8.0
pdb|1PFX|C Chain C, Porcine Factor Ixa 25 8.0
>pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-Trna Synthetase Complexed
With The Trna(Arg) And L-Arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
Length = 607
Score = 30.4 bits (67), Expect = 0.19
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 30/100 (30%)
Query: 105 FRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFGDVGFQSVMLNGDFLLDFPLPFVGKYL 164
F P F A+LV P+I+ R+ D G ++ N +++F P + K
Sbjct: 114 FNPQFLAKLVIPDILTRK---------------EDYGSCKLVENKKVIIEFSSPNIAKPF 158
Query: 165 Y--------MGGYMG-----LGLGVVAHGVNYTAEWGMSF 191
+ +GG++ LG V+ +NY +WG F
Sbjct: 159 HAGHLRSTIIGGFLANLYEKLGWEVIR--MNYLGDWGKQF 196
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 28.9 bits (63), Expect = 0.55
Identities = 29/140 (20%), Positives = 52/140 (36%), Gaps = 30/140 (21%)
Query: 30 KYYKYIKYYKAYEDKEVEELIRDLKRANAKSGLILGINTGFFYNHEIMVRTN-------- 81
K + + +Y + E++ + + A A +I+ + + +I+ R N
Sbjct: 247 KVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATM 306
Query: 82 -------SSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIGRRIYIQYYGGAPKK 134
S ++ + A G Y+T G I+ +G APK
Sbjct: 307 NLNGDYISDALAAQVGGIGIAPGANINYET---------------GHAIFEATHGTAPKY 351
Query: 135 AGFGDVGFQSVMLNGDFLLD 154
AG V SV+L+G LL+
Sbjct: 352 AGLDKVNPSSVILSGVLLLE 371
>pdb|1MFB|H Chain H, Fab Fragment (Murine Se155-4) Complex With
Heptasaccharide B:
Gal(1-2)man(1-4)ram(1-3)gal(1-2)[abe(1-3)]man(1-4)ram
pdb|1MFC|H Chain H, Fab Fragment (Murine Se155-4) Complex With
Heptasaccharide A:
(Gal(1-2)[abe(1-3)]man(1-4)ram(1-3)gal(1-2)man(1-4)ram,
pdb|1MFD|H Chain H, Fab Fragment (Murine Se155-4) Complex With The
Trisaccharide: Alpha-D-Galactose(1-2)[alpha-D-
Abequose(1-3)]alpha-D-Mannose (P1-Ome) (Part Of The
Cell-Surface Carbohydrate Of Pathogenic Salmonella)
pdb|1MFE|H Chain H, Fab Fragment (Murine Se155-4) Complex With
Dodecasaccharide
{-3)alpha-D-Galactose(1-2)[alpha-D-Abequose(1-3)]alpha-
D-Mannose(1-4)alpha-L-Rhamnose(1-} (Part Of The Cell
Surface Carbohydrate Of Pathogenic Salmonella)
Length = 219
Score = 27.3 bits (59), Expect = 1.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 61 GLILGINTGFFYNHEIMVRTNSSSITGNILNYL 93
G I N+ FYNH+ +T +++T I Y+
Sbjct: 49 GAIYPGNSATFYNHKFRAKTKLTAVTSTITAYM 81
>pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase Large Domain
pdb|1QHM|B Chain B, Escherichia Coli Pyruvate Formate Lyase Large Domain
Length = 624
Score = 25.8 bits (55), Expect = 4.7
Identities = 13/38 (34%), Positives = 19/38 (49%)
Query: 55 RANAKSGLILGINTGFFYNHEIMVRTNSSSITGNILNY 92
RAN ++ IN G ++ V S I G++LNY
Sbjct: 435 RANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNY 472
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 25.8 bits (55), Expect = 4.7
Identities = 13/38 (34%), Positives = 19/38 (49%)
Query: 55 RANAKSGLILGINTGFFYNHEIMVRTNSSSITGNILNY 92
RAN ++ IN G ++ V S I G++LNY
Sbjct: 435 RANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNY 472
>pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.Coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.Coli In Complex With
Substrate Analogue Oxamate
pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
Length = 759
Score = 25.8 bits (55), Expect = 4.7
Identities = 13/38 (34%), Positives = 19/38 (49%)
Query: 55 RANAKSGLILGINTGFFYNHEIMVRTNSSSITGNILNY 92
RAN ++ IN G ++ V S I G++LNY
Sbjct: 435 RANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNY 472
>pdb|1TYC| Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) Mutant With Thr 51
Replaced By Pro (T51p)
Length = 319
Score = 25.4 bits (54), Expect = 6.1
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 25 DTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAK 59
+T D +Y+KY+ +E+E L ++L+ A K
Sbjct: 257 NTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEK 291
>pdb|1TYD|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) Mutant With
Thr 51 Replaced By Ser (T51s)
Length = 319
Score = 25.4 bits (54), Expect = 6.1
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 25 DTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAK 59
+T D +Y+KY+ +E+E L ++L+ A K
Sbjct: 257 NTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEK 291
>pdb|1MFA| Fv Fragment (Murine Se155-4) Complex With The Trisaccharide:
Alpha-D-Galactose(1-2)[alpha-D-Abequose(1-3)]alpha-
D-Mannose (P1-Ome) (Part Of The Cell-Surface
Carbohydrate Of Pathogenic Salmonella)
Length = 247
Score = 25.4 bits (54), Expect = 6.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 61 GLILGINTGFFYNHEIMVRTNSSSITGNILNYL 93
G I N+ FYNH+ +T +++T Y+
Sbjct: 176 GAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYM 208
>pdb|1TYA|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) Mutant With
Thr 51 Replaced By Ala (T51a)
Length = 319
Score = 25.4 bits (54), Expect = 6.1
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 25 DTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAK 59
+T D +Y+KY+ +E+E L ++L+ A K
Sbjct: 257 NTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEK 291
>pdb|1TYB|E Chain E, Tyrosyl-Transfer Rna Synthetase (E.C.6.1.1.1) Mutant With
Thr 51 Replaced By Gly (T51g)
Length = 319
Score = 25.4 bits (54), Expect = 6.1
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 25 DTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAK 59
+T D +Y+KY+ +E+E L ++L+ A K
Sbjct: 257 NTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEK 291
>pdb|4TS1|A Chain A, Des-(Ile 318-Arg 417)-Tyrosyl-Transfer RNA Synthetase
(E.C.6.1.1.1) (Mutant With Residues 318-417 Deleted)
Complexed With Tyrosine
pdb|4TS1|B Chain B, Des-(Ile 318-Arg 417)-Tyrosyl-Transfer RNA Synthetase
(E.C.6.1.1.1) (Mutant With Residues 318-417 Deleted)
Complexed With Tyrosine
Length = 319
Score = 25.4 bits (54), Expect = 6.1
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 25 DTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAK 59
+T D +Y+KY+ +E+E L ++L+ A K
Sbjct: 257 NTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEK 291
>pdb|2TS1| Tyrosyl-Transfer RNA Synthetase (E.C.6.1.1.1)
pdb|3TS1| Tyrosyl-Transfer RNA Synthetase (E.C.6.1.1.1) Complexed With
Tyrosinyl Adenylate
Length = 419
Score = 25.4 bits (54), Expect = 6.1
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 25 DTIDPKYYKYIKYYKAYEDKEVEELIRDLKRANAK 59
+T D +Y+KY+ +E+E L ++L+ A K
Sbjct: 257 NTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEK 291
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Length = 1295
Score = 25.0 bits (53), Expect = 8.0
Identities = 11/36 (30%), Positives = 21/36 (57%)
Query: 28 DPKYYKYIKYYKAYEDKEVEELIRDLKRANAKSGLI 63
D Y +IKY+ ++ + E+ I+DL + SG++
Sbjct: 1061 DTHRYIWIKYFNLFDKELNEKEIKDLYDNQSNSGIL 1096
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 25.0 bits (53), Expect = 8.0
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 25/120 (20%)
Query: 24 YDTIDPKYYKYIKYYKAYEDKEVEELIRDLKRA----NAKSGLILGIN--TGF-FYNHEI 76
Y T DP+ + KY DK++ E+ L+R +K G+ + ++ +G FY +I
Sbjct: 260 YKTYDPRARIFKKYASKLGDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKI 319
Query: 77 MVRTNSSSITGNILNYLFAYGLRFGYQTFRPSFFA--RLVKPNIIGRRIYIQYYGGAPKK 134
+ + +FA G G+ + + R+++P +QY G KK
Sbjct: 320 PI---------ELYTTIFAMGRIAGWTAHLAEYVSHNRIIRPR-------LQYVGEIGKK 363
>pdb|1PFX|C Chain C, Porcine Factor Ixa
Length = 235
Score = 25.0 bits (53), Expect = 8.0
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 180 GVNYTAEWGMSFNAGLALTVLE 201
G Y + WG FN G + T+L+
Sbjct: 123 GSGYVSGWGRVFNRGRSATILQ 144
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.145 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,559,621
Number of Sequences: 13198
Number of extensions: 71281
Number of successful extensions: 192
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 16
length of query: 240
length of database: 2,899,336
effective HSP length: 86
effective length of query: 154
effective length of database: 1,764,308
effective search space: 271703432
effective search space used: 271703432
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)