BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645673|ref|NP_207850.1| Holliday junction DNA
helicase (ruvB) [Helicobacter pylori 26695]
(336 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 317 2e-87
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 315 4e-87
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 315 4e-87
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 315 6e-87
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 314 8e-87
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 313 2e-86
pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva D... 307 1e-84
pdb|1IXR|C Chain C, Ruva-Ruvb Complex 305 4e-84
pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermoph... 305 5e-84
pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader S... 44 3e-05
pdb|1JR3|A Chain A, Crystal Structure Of The Processivity C... 39 8e-04
pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And ... 35 0.012
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 33 0.046
pdb|1TAQ| Structure Of Taq Dna Polymerase 29 0.66
pdb|1TAU|A Chain A, Structure Of Dna Polymerase 29 0.66
pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An ... 29 0.66
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptida... 29 0.86
pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Loc... 29 0.86
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Cha... 29 0.86
pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 28 1.5
pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfon... 28 1.5
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme ... 28 1.5
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of ... 28 1.5
pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Fl... 28 1.5
pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 28 1.5
pdb|1BEF|A Chain A, Crystal Structure Of Dengue Virus Ns3 S... 28 1.9
pdb|1DF9|A Chain A, Dengue Virus Ns3-Protease Complexed Wit... 28 1.9
pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomet... 28 1.9
pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of ... 27 2.5
pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 D... 27 4.3
pdb|1EZF|A Chain A, Crystal Structure Of Human Squalene Syn... 26 5.6
pdb|1JBK|A Chain A, Crystal Structure Of The First Nuceloti... 26 5.6
pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTA... 26 7.3
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Ox... 26 7.3
pdb|1MIL| Transforming Protein 26 7.3
pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork... 25 9.6
pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of... 25 9.6
pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Compl... 25 9.6
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 317 bits (811), Expect = 2e-87
Identities = 158/307 (51%), Positives = 226/307 (73%), Gaps = 1/307 (0%)
Query: 21 LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80
LRP ++FIGQE +K L +++ AAK R E LDH+L GPPGLGKT+++HIIA E++TN
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140
I +T+ P++ K GD+AAILT+L+ D+LFIDEIHRL+ A+EE+LY A+EDF++DI+IG G
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKG 138
Query: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAAVKLNQ 200
P+A++I+ID+ PFTL+GATTR+G+LS+PLR RFG+ + FY EL IIK+AA ++
Sbjct: 139 PSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV 198
Query: 201 DIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260
+I+ +A+ IAKRSRGTPRIA+RL KRVRD V + ++ +I L + L +++ G D
Sbjct: 199 EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDEGLD 258
Query: 261 EADLAYL-SLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319
E D L +++ +G PVGLN +AAS+ + T+ +V EP+LL G+L RT +GRI T
Sbjct: 259 EFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTE 318
Query: 320 KTHELLK 326
K ++ LK
Sbjct: 319 KAYKHLK 325
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 315 bits (808), Expect = 4e-87
Identities = 157/307 (51%), Positives = 226/307 (73%), Gaps = 1/307 (0%)
Query: 21 LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80
LRP ++FIGQE +K L +++ AAK R E LDH+L GPPGLGKT+++HIIA E++TN
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140
I +T+ P++ K GD+AAILT+L+ D+LFIDEIHRL+ A+EE+LY A+EDF++DI+IG G
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKG 138
Query: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAAVKLNQ 200
P+A++I+ID+ PFTL+G+TTR+G+LS+PLR RFG+ + FY EL IIK+AA ++
Sbjct: 139 PSAKSIRIDIQPFTLVGSTTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV 198
Query: 201 DIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260
+I+ +A+ IAKRSRGTPRIA+RL KRVRD V + ++ +I L + L +++ G D
Sbjct: 199 EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDEGLD 258
Query: 261 EADLAYL-SLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319
E D L +++ +G PVGLN +AAS+ + T+ +V EP+LL G+L RT +GRI T
Sbjct: 259 EFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTE 318
Query: 320 KTHELLK 326
K ++ LK
Sbjct: 319 KAYKHLK 325
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 315 bits (808), Expect = 4e-87
Identities = 157/307 (51%), Positives = 226/307 (73%), Gaps = 1/307 (0%)
Query: 21 LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80
LRP ++FIGQE +K L +++ AAK R E LDH+L GPPGLG+T+++HIIA E++TN
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTN 78
Query: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140
I +T+ P++ K GD+AAILT+L+ D+LFIDEIHRL+ A+EE+LY A+EDF++DI+IG G
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKG 138
Query: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAAVKLNQ 200
P+A++I+ID+ PFTL+GATTR+G+LS+PLR RFG+ + FY EL IIK+AA ++
Sbjct: 139 PSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV 198
Query: 201 DIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260
+I+ +A+ IAKRSRGTPRIA+RL KRVRD V + ++ +I L + L +++ G D
Sbjct: 199 EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDEGLD 258
Query: 261 EADLAYL-SLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319
E D L +++ +G PVGLN +AAS+ + T+ +V EP+LL G+L RT +GRI T
Sbjct: 259 EFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTE 318
Query: 320 KTHELLK 326
K ++ LK
Sbjct: 319 KAYKHLK 325
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 315 bits (806), Expect = 6e-87
Identities = 157/307 (51%), Positives = 225/307 (73%), Gaps = 1/307 (0%)
Query: 21 LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80
LRP ++FIGQE +K L +++ AAK R E LDH+L GPPGLGKT+++HIIA E++TN
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140
I +T+ P++ K GD+AAILT+L+ D+LFIDEIHRL+ A+EE+LY A+EDF++DI+IG G
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKG 138
Query: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAAVKLNQ 200
P+A++I+ID+ PFTL+GAT R+G+LS+PLR RFG+ + FY EL IIK+AA ++
Sbjct: 139 PSAKSIRIDIQPFTLVGATVRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV 198
Query: 201 DIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260
+I+ +A+ IAKRSRGTPRIA+RL KRVRD V + ++ +I L + L +++ G D
Sbjct: 199 EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDEGLD 258
Query: 261 EADLAYL-SLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319
E D L +++ +G PVGLN +AAS+ + T+ +V EP+LL G+L RT +GRI T
Sbjct: 259 EFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTE 318
Query: 320 KTHELLK 326
K ++ LK
Sbjct: 319 KAYKHLK 325
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 314 bits (805), Expect = 8e-87
Identities = 157/307 (51%), Positives = 225/307 (73%), Gaps = 1/307 (0%)
Query: 21 LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80
LRP ++FIGQE +K L +++ AAK R E LDH+L GPPGLGKT+++HIIA E++TN
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140
I +T+ P++ K GD+AAILT+L+ D+LFIDEIHRL+ A+EE+LY A+EDF++DI+IG G
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKG 138
Query: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAAVKLNQ 200
P+A++I+ID+ PFTL+GATTR+G+LS+PLR FG+ + FY EL IIK+AA ++
Sbjct: 139 PSAKSIRIDIQPFTLVGATTRSGLLSSPLRSAFGIILELDFYTVKELKEIIKRAASLMDV 198
Query: 201 DIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260
+I+ +A+ IAKRSRGTPRIA+RL KRVRD V + ++ +I L + L +++ G D
Sbjct: 199 EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDEGLD 258
Query: 261 EADLAYL-SLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319
E D L +++ +G PVGLN +AAS+ + T+ +V EP+LL G+L RT +GRI T
Sbjct: 259 EFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTE 318
Query: 320 KTHELLK 326
K ++ LK
Sbjct: 319 KAYKHLK 325
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 313 bits (802), Expect = 2e-86
Identities = 157/307 (51%), Positives = 225/307 (73%), Gaps = 1/307 (0%)
Query: 21 LRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN 80
LRP ++FIGQE +K L +++ AAK R E LDH+L GPPGLGKT+++HIIA E++TN
Sbjct: 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78
Query: 81 IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSG 140
I +T+ P++ K GD+AAILT+L+ D+LFIDEIHRL+ A+EE+LY A+EDF++DI+IG G
Sbjct: 79 IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKG 138
Query: 141 PAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAAVKLNQ 200
P+A++I+ID+ PFTL+GATTR+G+LS+PLR RFG+ + FY EL IIK+AA ++
Sbjct: 139 PSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV 198
Query: 201 DIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFD 260
+I+ +A+ IAKRSRGT RIA+RL KRVRD V + ++ +I L + L +++ G D
Sbjct: 199 EIEDAAAEMIAKRSRGTGRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDEGLD 258
Query: 261 EADLAYL-SLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATP 319
E D L +++ +G PVGLN +AAS+ + T+ +V EP+LL G+L RT +GRI T
Sbjct: 259 EFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTE 318
Query: 320 KTHELLK 326
K ++ LK
Sbjct: 319 KAYKHLK 325
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 307 bits (786), Expect = 1e-84
Identities = 159/314 (50%), Positives = 222/314 (70%), Gaps = 2/314 (0%)
Query: 17 QEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKE 76
++++LRP +++IGQE++K L++ + AAK R+E L+H+L FGPPGLGKT+++H+IA E
Sbjct: 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
Query: 77 METNIKITAAPMIEKSGDLAAILTN-LQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDI 135
+ N+++T+ P IEK GDLAAIL N L+ DILFIDEIHRLS EE LYPAMEDF +DI
Sbjct: 62 LGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI 121
Query: 136 IIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAA 195
+IG GPAA+TI+++LP FTLIGATTR G+++ PL RFG+ +++Y P ELA + + A
Sbjct: 122 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDA 181
Query: 196 VKLNQDIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVN 255
L I +E+A EI +RSRGT R+A RL +RVRDFA V ++ L AL LG++
Sbjct: 182 RLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241
Query: 256 ELGFDEADLAYLS-LLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKG 314
ELG ++ D L L+ G PVGL T+A ++ ED GT+E+V EP+L+ G L+RT +G
Sbjct: 242 ELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRG 301
Query: 315 RIATPKTHELLKIP 328
R+AT + L P
Sbjct: 302 RVATELAYRHLGYP 315
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 305 bits (782), Expect = 4e-84
Identities = 157/304 (51%), Positives = 219/304 (71%), Gaps = 2/304 (0%)
Query: 17 QEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKE 76
++++LRP +++IGQE++K L++ + AAK R+E L+H+L FGPPGLGKT+++H+IA E
Sbjct: 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
Query: 77 METNIKITAAPMIEKSGDLAAILTN-LQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDI 135
+ N+++T+ P IEK GDLAAIL N L+ DILFIDEIHRLS EE LYPAMEDF +DI
Sbjct: 62 LGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI 121
Query: 136 IIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAA 195
+IG GPAA+TI+++LP FTLIGATTR G+++ PL RFG+ +++Y P ELA + + A
Sbjct: 122 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDA 181
Query: 196 VKLNQDIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVN 255
L I +E+A EI +RSRGT R+A RL +RVRDFA V ++ L AL LG++
Sbjct: 182 RLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241
Query: 256 ELGFDEADLAYLS-LLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKG 314
ELG ++ D L L+ G PVGL T+A ++ ED GT+E+V EP+L+ G L+RT +G
Sbjct: 242 ELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRG 301
Query: 315 RIAT 318
R+AT
Sbjct: 302 RVAT 305
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 305 bits (781), Expect = 5e-84
Identities = 158/314 (50%), Positives = 221/314 (70%), Gaps = 2/314 (0%)
Query: 17 QEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKE 76
++++LRP +++IGQE++K L++ + AAK R+E L+H+L FGPPGLGKT+++H+IA E
Sbjct: 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
Query: 77 METNIKITAAPMIEKSGDLAAILTN-LQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDI 135
+ N+++T+ P IEK GDLAAIL N L+ DILFIDEIHRLS EE LYPAMEDF +DI
Sbjct: 62 LGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI 121
Query: 136 IIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAA 195
+IG GPAA+TI+++LP FTLIGATTR G+++ PL RFG+ +++Y P ELA + + A
Sbjct: 122 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDA 181
Query: 196 VKLNQDIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMDLNITLHALNELGVN 255
L I +E+A EI +RSRGT R+A RL +RVRDFA V ++ L AL LG++
Sbjct: 182 RLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241
Query: 256 ELGFDEADLAYLS-LLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKG 314
ELG ++ D L L+ G PVGL T+A ++ ED GT+E+V EP+L+ G L+RT +G
Sbjct: 242 ELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRG 301
Query: 315 RIATPKTHELLKIP 328
R+ T + L P
Sbjct: 302 RVPTELAYRHLGYP 315
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 43.9 bits (102), Expect = 3e-05
Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 22 RPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEM---- 77
RP +D +GQE I L+ + + S+ H+LF GPPG+GKT+ + +A+E+
Sbjct: 20 RPQRLDDIVGQEHIVKRLKHYV-----KTGSMPHLLFAGPPGVGKTTAALALARELFGEN 74
Query: 78 --ETNIKITAAP------MIEKSGDLAAILTNLQAK-DILFIDEIHRLSPAIEEVLYPAM 128
+++ A+ + EK + A A I+F+DE L+ ++ L M
Sbjct: 75 WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTM 134
Query: 129 EDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTRAGMLSNPLRDRFGMSFRMQFYNPSELA 188
E F ++ I + + + P++ R + FR + ++A
Sbjct: 135 EMFSSNV------------------RFILSCNYSSKIIEPIQSRCAI-FRFRPLRDEDIA 175
Query: 189 LIIKKAAVKLNQDIKQESADEIAKRSRGTPRIALRLLK 226
++ A ++ +E I + G R A+ +L+
Sbjct: 176 KRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 213
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
Length = 373
Score = 38.9 bits (89), Expect = 8e-04
Identities = 37/139 (26%), Positives = 55/139 (38%), Gaps = 34/139 (24%)
Query: 22 RPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETNI 81
RP + D +GQE + + L + + LF G G+GKTSI+ ++AK +
Sbjct: 11 RPQTFADVVGQEHVLTALANGLSLGRIHHA----YLFSGTRGVGKTSIARLLAKGLNCET 66
Query: 82 KITAAP-----------------MIE-------KSGDLAAILTNLQAK------DILFID 111
ITA P +IE K D +L N+Q + ID
Sbjct: 67 GITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLID 126
Query: 112 EIHRLSPAIEEVLYPAMED 130
E+H LS L +E+
Sbjct: 127 EVHMLSRHSFNALLKTLEE 145
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
Length = 458
Score = 35.0 bits (79), Expect = 0.012
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 56 MLFFGPPGLGKTSISHIIAKEMETNIKITAAPMI------EKSGDLAAILTNLQ--AKDI 107
+L +GPPG GKT I+ +A E + P I E +L + A I
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 108 LFIDEIHRLSPAIEE 122
+FIDE+ ++P E+
Sbjct: 301 IFIDELDAIAPKREK 315
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 33.1 bits (74), Expect = 0.046
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 31 GQEKIKSNLQISICAAKK----RQESLDHMLFFGPPGLGKTSISHIIAK----------- 75
GQ+K L +I A+ + + LF GP G+GKT ++ ++K
Sbjct: 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDM 521
Query: 76 ----EMETNIKITAAPMIEKSGDLAAILTNLQAKD---ILFIDEIHRLSPAIEEVLYPAM 128
E T ++ AP D +LT+ K +L +DEI + P + +L M
Sbjct: 522 SEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVM 581
Query: 129 ED 130
++
Sbjct: 582 DN 583
Score = 26.9 bits (58), Expect = 3.3
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 30/135 (22%)
Query: 2 KERIVNLETLDFEISQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGP 61
+ER+ N T ++++ + P IG+EK +C +K ++ L G
Sbjct: 166 EERLENFTTNLNQLARVGGIDP-----LIGREKELERAIQVLCRRRK-----NNPLLVGE 215
Query: 62 PGLGKTSISHIIA-KEMETNIKITAAPMIEKSGDLAAILTNLQAK--------------- 105
G+GKT+I+ +A + ++ ++ A S D+ ++L + +
Sbjct: 216 SGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE 275
Query: 106 ----DILFIDEIHRL 116
ILFIDEIH +
Sbjct: 276 QDTNSILFIDEIHTI 290
>pdb|1TAQ| Structure Of Taq Dna Polymerase
Length = 832
Score = 29.3 bits (64), Expect = 0.66
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
Query: 84 TAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRL 133
TA ++E+ G L A+L NL RL PAI E + M+D +L
Sbjct: 203 TARKLLEEWGSLEALLKNLD-----------RLKPAIREKILAHMDDLKL 241
>pdb|1TAU|A Chain A, Structure Of Dna Polymerase
Length = 832
Score = 29.3 bits (64), Expect = 0.66
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
Query: 84 TAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRL 133
TA ++E+ G L A+L NL RL PAI E + M+D +L
Sbjct: 203 TARKLLEEWGSLEALLKNLD-----------RLKPAIREKILAHMDDLKL 241
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
Orientation For The Structure-Specific Nuclease Domain
Length = 832
Score = 29.3 bits (64), Expect = 0.66
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
Query: 84 TAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRL 133
TA ++E+ G L A+L NL RL PAI E + M+D +L
Sbjct: 203 TARKLLEEWGSLEALLKNLD-----------RLKPAIREKILAHMDDLKL 241
>pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
Length = 443
Score = 28.9 bits (63), Expect = 0.86
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 30 IGQEKIKSNLQISICAAKKRQ---ESLDH------MLFFGPPGLGKTSISHIIAK 75
IGQ+ K ++ I++ +R E L H +L GP G+GKT I+ +AK
Sbjct: 18 IGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAK 72
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 28.9 bits (63), Expect = 0.86
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 30 IGQEKIKSNLQISICAAKKRQ---ESLDH------MLFFGPPGLGKTSISHIIAK 75
IGQ+ K ++ I++ +R E L H +L GP G+GKT I+ +AK
Sbjct: 17 IGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAK 71
>pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
Length = 449
Score = 28.9 bits (63), Expect = 0.86
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 30 IGQEKIKSNLQISICAAKKRQ---ESLDH------MLFFGPPGLGKTSISHIIAK 75
IGQ+ K ++ I++ +R E L H +L GP G+GKT I+ +AK
Sbjct: 24 IGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAK 78
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 28.1 bits (61), Expect = 1.5
Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 8/66 (12%)
Query: 56 MLFFGPPGLGKTSISHIIAKEMETN-IKITAAPMIEK-SGDLAAILTNL------QAKDI 107
+L GPPG+GKT ++ +A E I + + +E G AA + +L A I
Sbjct: 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135
Query: 108 LFIDEI 113
+FIDEI
Sbjct: 136 VFIDEI 141
>pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|B Chain B, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|C Chain C, Hsluv (H. Influenzae)-Nlvr Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|D Chain D, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|E Chain E, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|F Chain F, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|S Chain S, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|T Chain T, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|U Chain U, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|V Chain V, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|W Chain W, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|X Chain X, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|S Chain S, Crystal Structure If The HQluv Protease-Chaperone
Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
Length = 444
Score = 28.1 bits (61), Expect = 1.5
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 9/58 (15%)
Query: 27 EDFIGQEKIKSNLQISICAAKKR---QESLDH------MLFFGPPGLGKTSISHIIAK 75
+ IGQ K + I++ +R QE L H +L GP G+GKT I+ +AK
Sbjct: 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72
>pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase
Length = 560
Score = 28.1 bits (61), Expect = 1.5
Identities = 28/92 (30%), Positives = 38/92 (40%), Gaps = 11/92 (11%)
Query: 239 LMDLNITLHAL-NELGVN----ELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGT 293
+++ +T H L N L N +L D DL S+L NA + VG G
Sbjct: 141 VVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGM 200
Query: 294 IEDVIEPFLLANGYLERTAKGRIATPKTHELL 325
+LANG L RT G + PK E +
Sbjct: 201 ------EVVLANGELLRTGMGALPDPKRPETM 226
>pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form Complexed By
Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form Complexed By
Adp
pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
Length = 560
Score = 28.1 bits (61), Expect = 1.5
Identities = 28/92 (30%), Positives = 38/92 (40%), Gaps = 11/92 (11%)
Query: 239 LMDLNITLHAL-NELGVN----ELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGT 293
+++ +T H L N L N +L D DL S+L NA + VG G
Sbjct: 141 VVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGM 200
Query: 294 IEDVIEPFLLANGYLERTAKGRIATPKTHELL 325
+LANG L RT G + PK E +
Sbjct: 201 ------EVVLANGELLRTGMGALPDPKRPETM 226
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 28.1 bits (61), Expect = 1.5
Identities = 28/92 (30%), Positives = 38/92 (40%), Gaps = 11/92 (11%)
Query: 239 LMDLNITLHAL-NELGVN----ELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGT 293
+++ +T H L N L N +L D DL S+L NA + VG G
Sbjct: 141 VVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGM 200
Query: 294 IEDVIEPFLLANGYLERTAKGRIATPKTHELL 325
+LANG L RT G + PK E +
Sbjct: 201 ------EVVLANGELLRTGMGALPDPKRPETM 226
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 28.1 bits (61), Expect = 1.5
Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 8/66 (12%)
Query: 56 MLFFGPPGLGKTSISHIIAKEMETN-IKITAAPMIEK-SGDLAAILTNL------QAKDI 107
+L GPPG+GKT ++ +A E I + + +E G AA + +L A I
Sbjct: 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111
Query: 108 LFIDEI 113
+FIDEI
Sbjct: 112 VFIDEI 117
>pdb|1BEF|A Chain A, Crystal Structure Of Dengue Virus Ns3 Serine Protease
Length = 181
Score = 27.7 bits (60), Expect = 1.9
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 62 PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTN-LQAKDILFIDEIHRLSPAI 120
PGL KT+ I A ++ + + +P+I+K G + I N + + ++ I + +I
Sbjct: 113 PGLFKTNAGTIGAVSLDFSPGTSGSPIIDKKGKVVGIYGNGVVTRSGAYVSAIAQTEKSI 172
Query: 121 EEVLYPAMED 130
E+ P +ED
Sbjct: 173 ED--NPEIED 180
>pdb|1DF9|A Chain A, Dengue Virus Ns3-Protease Complexed With Mung-Bean Bowman-
Birk Inhibitor
pdb|1DF9|B Chain B, Dengue Virus Ns3-Protease Complexed With Mung-Bean Bowman-
Birk Inhibitor
Length = 191
Score = 27.7 bits (60), Expect = 1.9
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 62 PGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTN-LQAKDILFIDEIHRLSPAI 120
PGL KT+ I A ++ + + +P+I+K G + I N + + ++ I + +I
Sbjct: 119 PGLFKTNAGTIGAVSLDFSPGTSGSPIIDKKGKVVGIYGNGVVTRSGAYVSAIAQTEKSI 178
Query: 121 EEVLYPAMED 130
E+ P +ED
Sbjct: 179 ED--NPEIED 186
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 27.7 bits (60), Expect = 1.9
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 9/58 (15%)
Query: 27 EDFIGQEKIKSNLQISICAAKKR---QESLDH------MLFFGPPGLGKTSISHIIAK 75
+ IGQ K + I++ +R QE L H +L GP G+GKT I+ +AK
Sbjct: 15 QHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAK 72
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 27.3 bits (59), Expect = 2.5
Identities = 23/66 (34%), Positives = 32/66 (47%), Gaps = 8/66 (12%)
Query: 56 MLFFGPPGLGKTSISHIIAKEMETN-IKITAAPMIEKSGDLAAILTN---LQAKD----I 107
+L GPPG GKT ++ IA E + I+ + +E + A QAK I
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCI 107
Query: 108 LFIDEI 113
+FIDEI
Sbjct: 108 IFIDEI 113
>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed
With A Tyrosine-Phosphorylated Peptide From The T-Cell
Receptor, Minimized Average Structure
Length = 107
Score = 26.6 bits (57), Expect = 4.3
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 28 DFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKT------SISHIIAKEMETNI 81
DF+ +E + Q + ++ Q H+L P G+ +T S+SH+I+ M+ ++
Sbjct: 28 DFLVRESTTTPGQYVLTGSQSGQPK--HLLLVDPEGVVRTKDHRFESVSHLISYHMDNHL 85
Query: 82 KITAA 86
I +A
Sbjct: 86 PIISA 90
>pdb|1EZF|A Chain A, Crystal Structure Of Human Squalene Synthase
pdb|1EZF|B Chain B, Crystal Structure Of Human Squalene Synthase
pdb|1EZF|C Chain C, Crystal Structure Of Human Squalene Synthase
Length = 340
Score = 26.2 bits (56), Expect = 5.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 223 RLLKRVRDFALVKNSSLMDLNITLHALNELGVNELGFDEADLAYLSLLAN 272
R +K++ DFA +N +++ + LNEL N L + YLS L N
Sbjct: 208 RYVKKLGDFAKPEN-----IDLAVQCLNELITNALHHIPDVITYLSRLRN 252
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 26.2 bits (56), Expect = 5.6
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 32/129 (24%)
Query: 10 TLDF-EISQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTS 68
T+D E +++ L P + D E+I+ +Q+ ++ + ++ + G PG+GKT+
Sbjct: 9 TIDLTERAEQGKLDPVIGRD----EEIRRTIQVL------QRRTKNNPVLIGEPGVGKTA 58
Query: 69 I-----SHIIAKEMETNIK---ITAAPM----------IEKSGDLAAILTNLQAKD---I 107
I II E+ +K + A M E L +L +L ++ I
Sbjct: 59 IVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVI 118
Query: 108 LFIDEIHRL 116
LFIDE+H +
Sbjct: 119 LFIDELHTM 127
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF
Vanillyl-Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF
Vanillyl-Alcohol Oxidase
Length = 560
Score = 25.8 bits (55), Expect = 7.3
Identities = 27/92 (29%), Positives = 37/92 (39%), Gaps = 11/92 (11%)
Query: 239 LMDLNITLHAL-NELGVN----ELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGT 293
+++ +T H L N L N +L D L S+L NA + VG G
Sbjct: 141 VVEPGVTYHDLHNYLEANNLRDKLWLDVPSLGGGSVLGNAVERGVGYTPYGDHWMMHSGM 200
Query: 294 IEDVIEPFLLANGYLERTAKGRIATPKTHELL 325
+LANG L RT G + PK E +
Sbjct: 201 ------EVVLANGELLRTGMGALPDPKRPETM 226
>pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 25.8 bits (55), Expect = 7.3
Identities = 27/92 (29%), Positives = 37/92 (39%), Gaps = 11/92 (11%)
Query: 239 LMDLNITLHAL-NELGVN----ELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGT 293
+++ +T H L N L N +L D L S+L NA + VG G
Sbjct: 141 VVEPGVTYHDLHNYLEANNLRDKLWLDVPSLGGGSVLGNAVERGVGYTPYGDHWMMHSGM 200
Query: 294 IEDVIEPFLLANGYLERTAKGRIATPKTHELL 325
+LANG L RT G + PK E +
Sbjct: 201 ------EVVLANGELLRTGMGALPDPKRPETM 226
>pdb|1MIL| Transforming Protein
Length = 104
Score = 25.8 bits (55), Expect = 7.3
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 28 DFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKT------SISHIIAKEMETNI 81
DF+ +E + Q + + Q H+L P G+ +T S+SH+I+ M+ ++
Sbjct: 28 DFLVRESTTTPGQYVLTGLQSGQPK--HLLLVDPEGVVRTKDHRFESVSHLISYHMDNHL 85
Query: 82 KITAA 86
I +A
Sbjct: 86 PIISA 90
>pdb|1CLQ|A Chain A, Crystal Structure Of A Replication Fork Dna Polymerase
Editing Complex At 2.7 A Resolution
pdb|1WAJ| Dna Polymerase From Bacteriophage Rb69
pdb|1WAF|A Chain A, Dna Polymerase From Bacteriophage Rb69
pdb|1WAF|B Chain B, Dna Polymerase From Bacteriophage Rb69
pdb|1IH7|A Chain A, High-Resolution Structure Of Apo Rb69 Dna Polymerase
Length = 903
Score = 25.4 bits (54), Expect = 9.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 237 SSLMDLNITLHALNELGVNELGFDEADLAYLS 268
+++ D + + + ++G+ LG D+ LAYLS
Sbjct: 63 ANMRDASQWIKRMEDIGLEALGMDDFKLAYLS 94
>pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family
Dna Polymerase
Length = 903
Score = 25.4 bits (54), Expect = 9.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 237 SSLMDLNITLHALNELGVNELGFDEADLAYLS 268
+++ D + + + ++G+ LG D+ LAYLS
Sbjct: 63 ANMRDASQWIKRMEDIGLEALGMDDFKLAYLS 94
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 25.4 bits (54), Expect = 9.6
Identities = 18/70 (25%), Positives = 34/70 (47%), Gaps = 13/70 (18%)
Query: 182 YNPSELALIIKKAAVKLNQDIKQESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLMD 241
++ +ELA ++ KA KL D+K K + PR+ + + K++ LM+
Sbjct: 298 FSVNELASLVTKAGSKLGLDVK--------KMTVPNPRV-----EAEEHYYNAKHTKLME 344
Query: 242 LNITLHALNE 251
L + H L++
Sbjct: 345 LGLEPHYLSD 354
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,745,176
Number of Sequences: 13198
Number of extensions: 66515
Number of successful extensions: 238
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 40
length of query: 336
length of database: 2,899,336
effective HSP length: 89
effective length of query: 247
effective length of database: 1,724,714
effective search space: 426004358
effective search space used: 426004358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)