BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645674|ref|NP_207851.1| hypothetical protein
[Helicobacter pylori 26695]
(160 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QR2|A Chain A, Human Quinone Reductase Type 2 >gi|5822... 30 0.17
pdb|1BF5|A Chain A, Stat-1 Dna Complex 30 0.17
pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga M... 28 0.50
pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima 28 0.65
pdb|1HZO|A Chain A, Structure Of Class A Cephalosporinase F... 27 0.85
pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREON... 27 1.5
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 26 1.9
pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New F... 26 1.9
pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh... 26 1.9
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 26 1.9
pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-... 26 1.9
pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Rec... 26 1.9
pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Rec... 26 1.9
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain ... 26 1.9
pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Rec... 26 1.9
pdb|1K9X|A Chain A, Structure Of Pyrococcus Furiosus Carbox... 26 2.5
pdb|1LQ7|A Chain A, De Novo Designed Protein Model Of Radic... 26 2.5
pdb|1GZL|A Chain A, Crystal Structure Of C14linkmidIQN17: A... 26 2.5
pdb|1AOI|C Chain C, X-Ray Structure Of The Nucleosome Core ... 25 3.2
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed Wi... 25 3.2
pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g... 25 3.2
pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n... 25 3.2
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Gl... 25 3.2
pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t... 25 3.2
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 25 4.2
pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal ... 25 4.2
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 25 4.2
pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal ... 25 4.2
pdb|1EQZ|E Chain E, X-Ray Structure Of The Nucleosome Core ... 25 4.2
pdb|1K8A|Z Chain Z, Co-Crystal Structure Of Carbomycin A Bo... 25 5.5
pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Db... 25 5.5
pdb|1O75|A Chain A, Tp47, The 47-Kilodalton Lipoprotein Of ... 25 5.5
pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolob... 25 5.5
pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol ... 24 7.2
pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complex... 24 7.2
pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complex... 24 7.2
pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannasch... 24 7.2
pdb|1IGS| Indole-3-Glycerolphosphate Synthase From Sulfol... 24 7.2
pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleoso... 24 9.4
pdb|1KQL|A Chain A, Crystal Structure Of The C-Terminal Reg... 24 9.4
>pdb|1QR2|A Chain A, Human Quinone Reductase Type 2
pdb|1QR2|B Chain B, Human Quinone Reductase Type 2
pdb|2QR2|A Chain A, Human Quinone Reductase Type 2, Complex With Menadione
pdb|2QR2|B Chain B, Human Quinone Reductase Type 2, Complex With Menadione
Length = 230
Score = 29.6 bits (65), Expect = 0.17
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 76 SLKGVKIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNEEVSNEEALNKEVSS 135
SLK V ++EL T ++ DL Y + E + +SN E N V +
Sbjct: 20 SLKNVAVDELSRQGCTV-----TVSDL---YAMNFEPRATDKDITGTLSNPEVFNYGVET 71
Query: 136 DESPKEVQLATDNNTKEHDKEKE 158
E+ K+ LA+D T E K +E
Sbjct: 72 HEAYKQRSLASD-ITDEQKKVRE 93
>pdb|1BF5|A Chain A, Stat-1 Dna Complex
Length = 545
Score = 29.6 bits (65), Expect = 0.17
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 64 LEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHL 119
L+ QK ++KV ++K D + E+EIKS++DL +Y +T HL
Sbjct: 1 LDKQKELDSKVRNVK--------DKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHL 48
>pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga Maritima
Length = 419
Score = 28.1 bits (61), Expect = 0.50
Identities = 20/100 (20%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 61 KETLEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLN 120
K E++ L + V+S +G+ E++DA E+ +++L + QKSL ++ + + +
Sbjct: 27 KRDQEWEALAFSSVKS-RGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSS 85
Query: 121 EEVSNEE-ALNKEVSSDESPKEVQLATDNNTKEHDKEKEN 159
E+ + ++ ++ + + ++ ++ +K KEN
Sbjct: 86 VSFEREDTVIERDFGEEKRSITLDILSEXQSEALEKLKEN 125
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
Length = 419
Score = 27.7 bits (60), Expect = 0.65
Identities = 20/100 (20%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 61 KETLEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLN 120
K E++ L + V+S +G+ E++DA E+ +++L + QKSL ++ + + +
Sbjct: 27 KRDQEWEALAFSSVKS-RGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSS 85
Query: 121 EEVSNEE-ALNKEVSSDESPKEVQLATDNNTKEHDKEKEN 159
E+ + ++ ++ + + ++ ++ +K KEN
Sbjct: 86 VSFEREDTVIERDFGEEKRSITLDILSEMQSEALEKLKEN 125
>pdb|1HZO|A Chain A, Structure Of Class A Cephalosporinase From Proteus
Vulgaris K1
pdb|1HZO|B Chain B, Structure Of Class A Cephalosporinase From Proteus
Vulgaris K1
Length = 271
Score = 27.3 bits (59), Expect = 0.85
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 17 IIFLGPEKFPQAVVDVVKFFRAVKKTLNDAKDTLDKEINIEEIKKETLEYQKLFENKVES 76
I + G E+F A V AV K LDK I I+ K + + Y + E + +
Sbjct: 34 ITYRGEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIK--KSDLVAYSPITEKHLTT 91
Query: 77 LKGVKIEELEDAKV-----TAENEI 96
G+ + EL A + TA N+I
Sbjct: 92 --GMTLAELSAATLQYSDNTAMNKI 114
>pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|B Chain B, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
Length = 80
Score = 26.6 bits (57), Expect = 1.5
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 23 EKFPQAVVDVVKFFRAVKKTLNDAK 47
+K PQAV+DV++F+ + KKT N K
Sbjct: 49 KKNPQAVLDVLEFYNS-KKTSNSQK 72
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 26.2 bits (56), Expect = 1.9
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Query: 44 NDAKDTLDKEINIEEIKKETLEYQKLFENKVESLKGVKIEELEDAKVTAENEI 96
N K + E +I +++ E LE +K NK E K EELE K E+ +
Sbjct: 1113 NALKKIRELESHISDLQ-EDLESEKAARNKAEKQKRDLSEELEALKTELEDTL 1164
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 26.2 bits (56), Expect = 1.9
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 46 AKDTLDKEINIEEIKKETL--EYQKLFENKVESLKGVKIEELEDAKVTAENEIK-SIQDL 102
A +D +E I +TL +Y ++ + V +LK V E++ D N + S +D
Sbjct: 260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 319
Query: 103 MQDYQKSLETNTIPNHLNEEVSNEEALNKEVSSDESPKEVQLATDNNTKEHDKEKENV 160
+ D + + + L+E EE ++E +E E Q + + T E +KE + +
Sbjct: 320 VVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQ-SPEPETSEEEKEDKEL 376
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 26.2 bits (56), Expect = 1.9
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 86 EDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNEEVSNEEALNKEVSSDESPKEVQLA 145
ED K T ++ I+ + D +LE + E V EEAL K+V +P EV LA
Sbjct: 25 EDLKAT----LREIRRALMDADVNLE---VTRDFVERV-REEALGKQVLESLTPAEVILA 76
Query: 146 T 146
T
Sbjct: 77 T 77
>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
Length = 426
Score = 26.2 bits (56), Expect = 1.9
Identities = 18/61 (29%), Positives = 30/61 (48%), Gaps = 5/61 (8%)
Query: 41 KTLNDAKDTLDKEINIEEIKKETLEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQ 100
K LN+ +D L+K++N K + +K ENK K +++ DA E K +Q
Sbjct: 250 KELNEERDILNKDLN-----KALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQ 304
Query: 101 D 101
+
Sbjct: 305 E 305
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 386
Score = 26.2 bits (56), Expect = 1.9
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 46 AKDTLDKEINIEEIKKETL--EYQKLFENKVESLKGVKIEELEDAKVTAENEIK-SIQDL 102
A +D +E I +TL +Y ++ + V +LK V E++ D N + S +D
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320
Query: 103 MQDYQKSLETNTIPNHLNEEVSNEEALNKEVSSDESPKEVQLATDNNTKEHDKEKENV 160
+ D + + + L+E EE ++E +E E Q + + T E +KE + +
Sbjct: 321 VVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQ-SPEPETSEEEKEDKEL 377
>pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 293
Score = 26.2 bits (56), Expect = 1.9
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 86 EDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNEEVSNEEALNKEVSSDESPKEVQLA 145
ED K T ++ I+ + D +LE + E V EEAL K+V +P EV LA
Sbjct: 24 EDLKAT----LREIRRALMDADVNLE---VTRDFVERV-REEALGKQVLESLTPAEVILA 75
Query: 146 T 146
T
Sbjct: 76 T 76
>pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 294
Score = 26.2 bits (56), Expect = 1.9
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 86 EDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNEEVSNEEALNKEVSSDESPKEVQLA 145
ED K T ++ I+ + D +LE + E V EEAL K+V +P EV LA
Sbjct: 24 EDLKAT----LREIRRALMDADVNLE---VTRDFVERV-REEALGKQVLESLTPAEVILA 75
Query: 146 T 146
T
Sbjct: 76 T 76
>pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
Length = 296
Score = 26.2 bits (56), Expect = 1.9
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 86 EDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNEEVSNEEALNKEVSSDESPKEVQLA 145
ED K T ++ I+ + D +LE + E V EEAL K+V +P EV LA
Sbjct: 25 EDLKAT----LREIRRALMDADVNLE---VARDFVERV-REEALGKQVLESLTPAEVILA 76
Query: 146 T 146
T
Sbjct: 77 T 77
>pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 26.2 bits (56), Expect = 1.9
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 86 EDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNEEVSNEEALNKEVSSDESPKEVQLA 145
ED K T ++ I+ + D +LE + E V EEAL K+V +P EV LA
Sbjct: 25 EDLKAT----LREIRRALMDADVNLE---VARDFVERV-REEALGKQVLESLTPAEVILA 76
Query: 146 T 146
T
Sbjct: 77 T 77
>pdb|1K9X|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|B Chain B, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|C Chain C, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1K9X|D Chain D, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Yb
pdb|1KA2|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Apo-Mg
pdb|1KA4|A Chain A, Structure Of Pyrococcus Furiosus Carboxypeptidase Nat-Pb
Length = 499
Score = 25.8 bits (55), Expect = 2.5
Identities = 16/74 (21%), Positives = 36/74 (48%)
Query: 24 KFPQAVVDVVKFFRAVKKTLNDAKDTLDKEINIEEIKKETLEYQKLFENKVESLKGVKIE 83
KF + ++ + + L ++ D +++ E T + +K+FE + LK + +
Sbjct: 130 KFEPWLDKIISLAKRAAEYLGYEEEPYDALLDLYEEGLRTRDVEKMFEVLEKKLKPLLDK 189
Query: 84 ELEDAKVTAENEIK 97
LE+ KV E+ ++
Sbjct: 190 ILEEGKVPREHPLE 203
>pdb|1LQ7|A Chain A, De Novo Designed Protein Model Of Radical Enzymes
Length = 67
Score = 25.8 bits (55), Expect = 2.5
Identities = 21/68 (30%), Positives = 33/68 (47%), Gaps = 5/68 (7%)
Query: 33 VKFFRAVKKTLNDAKDTLDKEINIEEIKKETLEYQKLFENKVESL-KGVKIEELEDAKVT 91
VK K L + L IEE+KK+ E +K K+E L G +++++E+
Sbjct: 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKK----KIEELGGGGEVKKVEEEVKK 59
Query: 92 AENEIKSI 99
E EIK +
Sbjct: 60 LEEEIKKL 67
>pdb|1GZL|A Chain A, Crystal Structure Of C14linkmidIQN17: A CROSS-Linked
Inhibitor Of Hiv-1 Entry Bound To The Gp41 Hydrophobic
Pocket
pdb|1GZL|B Chain B, Crystal Structure Of C14linkmidIQN17: A CROSS-Linked
Inhibitor Of Hiv-1 Entry Bound To The Gp41 Hydrophobic
Pocket
pdb|1CZQ|A Chain A, Crystal Structure Of The D10-P1IQN17 COMPLEX: A D-Peptide
Inhibitor Of Hiv-1 Entry Bound To The Gp41 Coiled-Coil
Pocket
Length = 46
Score = 25.8 bits (55), Expect = 2.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 81 KIEELEDAKVTAENEIKSIQDLMQ 104
KIEE+E + ENEI I+ L+Q
Sbjct: 9 KIEEIESKQKKIENEIARIKKLLQ 32
>pdb|1AOI|C Chain C, X-Ray Structure Of The Nucleosome Core Particle At 2.8 A
Resolution
pdb|1AOI|G Chain G, X-Ray Structure Of The Nucleosome Core Particle At 2.8 A
Resolution
Length = 116
Score = 25.4 bits (54), Expect = 3.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 111 ETNTIPNHLNEEVSNEEALNK 131
+T IP HL V N+E LNK
Sbjct: 72 KTRIIPRHLQLAVRNDEELNK 92
>pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1GTR|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Atp (-8 Degrees C)
pdb|1GTS|A Chain A, Glutaminyl-Trna Synthetase (E.C.6.1.1.18) Complexed With
Trna And Amp (8 Degrees C)
pdb|1GSG|P Chain P, Glutaminyl-TRNA Synthetase (GlnRS) Complex With tRNAGln
And ATP
Length = 553
Score = 25.4 bits (54), Expect = 3.2
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 71 ENKVE--SLKGVKIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNE 121
+N +E SL+ E+L + A I ++ ++++YQ E T+PNH N+
Sbjct: 319 DNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNK 371
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 25.4 bits (54), Expect = 3.2
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 71 ENKVE--SLKGVKIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNE 121
+N +E SL+ E+L + A I ++ ++++YQ E T+PNH N+
Sbjct: 319 DNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNK 371
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 25.4 bits (54), Expect = 3.2
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 71 ENKVE--SLKGVKIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNE 121
+N +E SL+ E+L + A I ++ ++++YQ E T+PNH N+
Sbjct: 319 DNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNK 371
>pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna-Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
Length = 548
Score = 25.4 bits (54), Expect = 3.2
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 71 ENKVE--SLKGVKIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNE 121
+N +E SL+ E+L + A I ++ ++++YQ E T+PNH N+
Sbjct: 320 DNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNK 372
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 25.4 bits (54), Expect = 3.2
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 71 ENKVE--SLKGVKIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNE 121
+N +E SL+ E+L + A I ++ ++++YQ E T+PNH N+
Sbjct: 319 DNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNK 371
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 25.0 bits (53), Expect = 4.2
Identities = 17/63 (26%), Positives = 26/63 (40%), Gaps = 9/63 (14%)
Query: 96 IKSIQDLMQDYQKSLETNTIPNHLNEEVSNEEALNKEVSSDESPKEVQLATDNNTKEHDK 155
++ +QDL + Y + + EE L + S ES + L TD E +K
Sbjct: 437 VQKLQDLKKKYYEEPRKG---------IQAEEILQTYLKSKESMTDAILQTDQTLTEKEK 487
Query: 156 EKE 158
E E
Sbjct: 488 EIE 490
>pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 95
Score = 25.0 bits (53), Expect = 4.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 111 ETNTIPNHLNEEVSNEEALNK 131
+T IP HL + N+E LNK
Sbjct: 61 KTRIIPRHLQLAIRNDEELNK 81
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 25.0 bits (53), Expect = 4.2
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 57 EEIKKETLEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIP 116
EE++K E+QK F + SL V + +D ++ S+ + + SL+
Sbjct: 10 EEMEKHAKEFQKTFSEQFNSL--VNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQ----- 62
Query: 117 NHLNEEVSNEEALNKEVSSDESPKEVQLATDNNTKEH-DKEKE 158
+S+ KE + +++ + V+ + K H D EKE
Sbjct: 63 ----GAISDANGKAKE-ALEQARQNVEKTAEELRKAHPDVEKE 100
>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein
Length = 128
Score = 25.0 bits (53), Expect = 4.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 111 ETNTIPNHLNEEVSNEEALNK 131
+T IP HL + N+E LNK
Sbjct: 75 KTRIIPRHLQLAIRNDEELNK 95
>pdb|1EQZ|E Chain E, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|A Chain A, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|E Chain E, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
Length = 129
Score = 25.0 bits (53), Expect = 4.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 111 ETNTIPNHLNEEVSNEEALNK 131
+T IP HL + N+E LNK
Sbjct: 76 KTRIIPRHLQLAIRNDEELNK 96
>pdb|1K8A|Z Chain Z, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|Z Chain Z, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|Z Chain Z, Co-Crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|Z Chain Z, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|Z Chain Z, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1JJ2|X Chain X, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|X Chain X, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
Length = 240
Score = 24.6 bits (52), Expect = 5.5
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 51 DKEINIEEIKKETLEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDLMQDYQKSL 110
++++ EE E + + +K ESL+ E +ED + ++ + + + +
Sbjct: 4 EEDVEAEEEYTELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARI 63
Query: 111 ETNTIPNHLNEEVSNEEALNKEVSSDESPKE 141
+ + L E S EA +E +E+P E
Sbjct: 64 KADV--GGLEVE-SETEAEVEEEGGEEAPDE 91
>pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass
Dna Polymerase Catalytic Fragment From Sulfolobus
Solfataricus
Length = 221
Score = 24.6 bits (52), Expect = 5.5
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 35 FFRAVKKTLNDAKDTLDKEINIEEIKKETLEYQKLFENKVESLKGVKIEELEDAKVT 91
F + LN D ++ E T + + FEN +E + +K E LE K+T
Sbjct: 89 FSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKIT 145
>pdb|1O75|A Chain A, Tp47, The 47-Kilodalton Lipoprotein Of Treponema Pallidum
pdb|1O75|B Chain B, Tp47, The 47-Kilodalton Lipoprotein Of Treponema Pallidum
Length = 415
Score = 24.6 bits (52), Expect = 5.5
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 51 DKEINIEEIKKETLEYQKLFENKVES----LKGVKIEELEDAKVTAENEIKSIQDLMQDY 106
D EI E ++ + V+S + VK+ ++ V +E+K I +
Sbjct: 117 DGEIKFEAVEGAVALADRASSFMVDSEEYKITNVKVHGMKFVPVAVPHELKGIAKEKFHF 176
Query: 107 QKSLETNTIPNHLNEEVSNEEALNKEVSSDESPKEVQLAT 146
+ N L ++ + ++VSS ESP ++ + T
Sbjct: 177 VEDSRVTENTNGLKTMLTEDSFSARKVSSMESPHDLVVDT 216
>pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolobus Solfataricus
pdb|1K1Q|B Chain B, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
Length = 354
Score = 24.6 bits (52), Expect = 5.5
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 35 FFRAVKKTLNDAKDTLDKEINIEEIKKETLEYQKLFENKVESLKGVKIEELEDAKVT 91
F + LN D ++ E T + + FEN +E + +K E LE K+T
Sbjct: 84 FSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKIT 140
>pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Syntase
(Igps)with Reduced
1-(O-Caboxyphenylamino)-1-Deoxyribulose 5-Phosphate
(Rcdrp)
pdb|1LBL|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Igps) In Complex With 1-(O-Carboxyphenylamino)-1-
Deoxyribulose 5'-Phosphate (Cdrp)
pdb|1A53| Complex Of Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus With Indole-3-Glycerolphosphate At 2.0 A
Resolution
Length = 247
Score = 24.3 bits (51), Expect = 7.2
Identities = 13/49 (26%), Positives = 26/49 (52%)
Query: 54 INIEEIKKETLEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDL 102
I I ETLE K + K+ S+ + ++ ++ ++ NEI+ ++ L
Sbjct: 176 IGINSRDLETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKL 224
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 24.3 bits (51), Expect = 7.2
Identities = 14/64 (21%), Positives = 32/64 (49%)
Query: 81 KIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNEEVSNEEALNKEVSSDESPK 140
++EE + ++ AE + + ++L +QK++E +H + E + +EV +
Sbjct: 24 ELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARMEPVPREVLGSATRD 83
Query: 141 EVQL 144
+ QL
Sbjct: 84 QDQL 87
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 24.3 bits (51), Expect = 7.2
Identities = 14/64 (21%), Positives = 32/64 (49%)
Query: 81 KIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIPNHLNEEVSNEEALNKEVSSDESPK 140
++EE + ++ AE + + ++L +QK++E +H + E + +EV +
Sbjct: 24 ELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARMEPVPREVLGSATRD 83
Query: 141 EVQL 144
+ QL
Sbjct: 84 QDQL 87
>pdb|1A76| Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77| Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 24.3 bits (51), Expect = 7.2
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 13 LVVAIIFLGPEKFPQAVVDVVKFFRAVKKTLND-AKDTLDKEINIEEIKKETLEYQKLFE 71
L+ IF+G + P V + F RA + + AKD L KE+ + K + K+ +
Sbjct: 214 LIDIAIFMGTDYNPGGVKGI-GFKRAYELVRSGVAKDVLKKEVEYYDEIKRIFKEPKVTD 272
Query: 72 NKVESLK 78
N SLK
Sbjct: 273 NYSLSLK 279
>pdb|1IGS| Indole-3-Glycerolphosphate Synthase From Sulfolobus Solfataricus
At 2.0 A Resolution
pdb|1JUL| Indole-3-Glycerolphosphate Synthase From Sulfolobus Solfataricus
In A Second Orthorhombic Crystal Form
pdb|1JUK| Indole-3-Glycerolphosphate Synthase From Sulfolobus Solfataricus
In A Trigonal Crystal Form
Length = 248
Score = 24.3 bits (51), Expect = 7.2
Identities = 13/49 (26%), Positives = 26/49 (52%)
Query: 54 INIEEIKKETLEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDL 102
I I ETLE K + K+ S+ + ++ ++ ++ NEI+ ++ L
Sbjct: 177 IGINSRDLETLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKL 225
>pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|G Chain G, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 131
Score = 23.9 bits (50), Expect = 9.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 111 ETNTIPNHLNEEVSNEEALNK 131
+T IP HL + N++ LNK
Sbjct: 76 KTRIIPRHLQLAIRNDDELNK 96
>pdb|1KQL|A Chain A, Crystal Structure Of The C-Terminal Region Of Striated
Muscle Alpha-Tropomyosin At 2.7 Angstrom Resolution
pdb|1KQL|B Chain B, Crystal Structure Of The C-Terminal Region Of Striated
Muscle Alpha-Tropomyosin At 2.7 Angstrom Resolution
Length = 56
Score = 23.9 bits (50), Expect = 9.4
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 81 KIEELEDAKVTAENEIKSIQDLMQDYQKSLETNTIP-NHLNEEVSNEEALNKEVS 134
K+EEL ENE+ ++ L+ D + L + ++EE+ + ALN S
Sbjct: 3 KVEELLSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEEL--DHALNDMTS 55
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.309 0.130 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 826,162
Number of Sequences: 13198
Number of extensions: 29360
Number of successful extensions: 131
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 40
length of query: 160
length of database: 2,899,336
effective HSP length: 81
effective length of query: 79
effective length of database: 1,830,298
effective search space: 144593542
effective search space used: 144593542
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 50 (23.9 bits)