BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644737|ref|NP_206907.1| cysteine synthetase (cysK)
[Helicobacter pylori 26695]
(306 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J6N|A Chain A, Crystal Structure Of Cysteine Synthase ... 223 2e-59
pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vi... 222 5e-59
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-S... 222 5e-59
pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmo... 188 6e-49
pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of... 186 3e-48
pdb|1TDJ| Threonine Deaminase (Biosynthetic) From E. Coli 49 7e-07
pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro... 45 8e-06
pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 42 7e-05
pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From... 42 7e-05
pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 42 7e-05
pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+ >gi... 42 7e-05
pdb|1QOQ|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 42 9e-05
pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W... 41 1e-04
pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With... 41 2e-04
pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t)... 41 2e-04
pdb|1AZO| Dna Mismatch Repair Protein Muth From E. Coli 29 0.77
pdb|2AZO|B Chain B, Dna Mismatch Repair Protein Muth From E... 28 1.3
pdb|1ABR|B Chain B, Abrin-A Complexed With Two Sugar Chains 27 2.9
pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex Wi... 27 2.9
pdb|1CII| Colicin Ia 27 2.9
pdb|1NAL|1 Chain 1, Mol_id: 1; Molecule: N-Acetylneuraminat... 27 2.9
pdb|1PFK|A Chain A, Phosphofructokinase (E.C.2.7.1.11) (R-S... 27 3.8
pdb|2PFK|C Chain C, Phosphofructokinase (E.C.2.7.1.11) 27 3.8
pdb|2PFK|D Chain D, Phosphofructokinase (E.C.2.7.1.11) 27 3.8
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 26 5.0
pdb|1J5X|A Chain A, Crystal Structure Of Conserved Hypothet... 26 6.5
pdb|4AAH|A Chain A, Methanol Dehydrogenase From Methylophil... 25 8.5
pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hex... 25 8.5
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With ... 25 8.5
pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human ... 25 8.5
pdb|1M8Z|A Chain A, Crystal Structure Of A Pumilio-Homology... 25 8.5
pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hex... 25 8.5
pdb|1G72|A Chain A, Catalytic Mechanism Of Quinoprotein Met... 25 8.5
pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturas... 25 8.5
>pdb|1J6N|A Chain A, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|B Chain B, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|C Chain C, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
pdb|1J6N|D Chain D, Crystal Structure Of Cysteine Synthase (Tm0665) From
Thermotoga Maritima At 1.8 A Resolution
Length = 303
Score = 223 bits (569), Expect = 2e-59
Identities = 124/297 (41%), Positives = 186/297 (61%), Gaps = 11/297 (3%)
Query: 7 MQDAIGRTPVFKFTNKDYPIPLNSAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSK 66
M+ IG TP+ + + D S I+ KLE NPGGSVKDR ++I + K G + K
Sbjct: 14 MERLIGSTPIVRLDSID------SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLL--K 65
Query: 67 TTIIEPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTSEGISG 126
I+EPT+GN GIA+A++ K + I +PE S E++++++ LGA ++ TP G+ G
Sbjct: 66 NGIVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKG 125
Query: 127 AIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFA 186
A++K+ E++ +++ QFENP N ++ T PEI++++ + +FVAG+G+GGT +
Sbjct: 126 AVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTIS 184
Query: 187 GTARYLKERIP-AIRLIGVEPEGS-ILNGGEPGPHEIEGIGVEFIPPFFENLDIDGFETI 244
G R LK ++++ VEP S +L+GG+PG H I+GIG F+P + ID T+
Sbjct: 185 GVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITV 244
Query: 245 SDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEAQRLPEGSQVLTIFPDVADRYLS 301
DEE + R LAKK GLLVG SSGA AALK AQ+L ++V+T+ PD A+RYLS
Sbjct: 245 EDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLS 301
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 222 bits (565), Expect = 5e-59
Identities = 124/309 (40%), Positives = 175/309 (56%), Gaps = 9/309 (2%)
Query: 3 IITTMQDAIGRTPVFKFTNKDYPIPLNSAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGK 62
I+ + IG TP+ + L + AK E N GGSVKDR+ +I + + G
Sbjct: 33 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 92
Query: 63 ITSKTTIIEPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTS- 121
+ TIIEPT+GNTGI LAL A + I V+PEK S+EK ++RALGA ++ TPT+
Sbjct: 93 LKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNA 152
Query: 122 --EGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGI 179
+ + + L IP+S++ Q+ N NP A+Y T A EI+Q+ L VA +
Sbjct: 153 RFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASV 212
Query: 180 GSGGTFAGTARYLKERIPAIRLIGVEPEGSI------LNGGEPGPHEIEGIGVEFIPPFF 233
G+GGT G AR LKE+ P R+IGV+PEGSI LN E +E+EGIG +FIP
Sbjct: 213 GTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVL 272
Query: 234 ENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEAQRLPEGSQVLTIFP 293
+ +D + +DEE F++ R L + GLL G S+G+ A+K AQ L EG + + I P
Sbjct: 273 DRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILP 332
Query: 294 DVADRYLSK 302
D Y++K
Sbjct: 333 DSVRNYMTK 341
>pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
Length = 435
Score = 222 bits (565), Expect = 5e-59
Identities = 124/309 (40%), Positives = 175/309 (56%), Gaps = 9/309 (2%)
Query: 3 IITTMQDAIGRTPVFKFTNKDYPIPLNSAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGK 62
I+ + IG TP+ + L + AK E N GGSVKDR+ +I + + G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 63 ITSKTTIIEPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTS- 121
+ TIIEPT+GNTGI LAL A + I V+PEK S+EK ++RALGA ++ TPT+
Sbjct: 158 LKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNA 217
Query: 122 --EGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGI 179
+ + + L IP+S++ Q+ N NP A+Y T A EI+Q+ L VA +
Sbjct: 218 RFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASV 277
Query: 180 GSGGTFAGTARYLKERIPAIRLIGVEPEGSI------LNGGEPGPHEIEGIGVEFIPPFF 233
G+GGT G AR LKE+ P R+IGV+PEGSI LN E +E+EGIG +FIP
Sbjct: 278 GTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVL 337
Query: 234 ENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEAQRLPEGSQVLTIFP 293
+ +D + +DEE F++ R L + GLL G S+G+ A+K AQ L EG + + I P
Sbjct: 338 DRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILP 397
Query: 294 DVADRYLSK 302
D Y++K
Sbjct: 398 DSVRNYMTK 406
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 188 bits (478), Expect = 6e-49
Identities = 119/306 (38%), Positives = 168/306 (54%), Gaps = 16/306 (5%)
Query: 11 IGRTPVFKFTNKDYPIPLNSAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTII 70
IG TP+ + N I AK+E NP SVK R+G +I + K G + ++
Sbjct: 11 IGHTPLVRLNRIG-----NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELV 65
Query: 71 EPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTSEGISGAIKK 130
EPT GNTGIALA VA K +PE S E++++++ALGA ++ T ++G+ GAI+K
Sbjct: 66 EPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQK 125
Query: 131 SKELAESIPDSYLPL-QFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGTA 189
++E+ S P YL L QF NP NP + T PEI ++ + F++G+G+GGT G
Sbjct: 126 AEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVT 185
Query: 190 RYLKERIPAIRLI--GVEPEGS-----ILNGGE--PGPHEIEGIGVEFIPPFFENLDIDG 240
RY+K LI VEP S L G E PGPH+I+GIG FIP + ID
Sbjct: 186 RYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLIDK 245
Query: 241 FETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALK-EAQRLPEGSQVLTIFPDVADRY 299
I++EE S R+L ++ G+L G SSGAA AALK + ++ I P +RY
Sbjct: 246 VVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERY 305
Query: 300 LSKGIY 305
LS ++
Sbjct: 306 LSTALF 311
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 186 bits (472), Expect = 3e-48
Identities = 118/306 (38%), Positives = 167/306 (54%), Gaps = 16/306 (5%)
Query: 11 IGRTPVFKFTNKDYPIPLNSAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTII 70
IG TP+ + N I AK+E NP SV R+G +I + K G + ++
Sbjct: 11 IGHTPLVRLNRIG-----NGRILAKVESRNPSFSVACRIGANMIWDAEKRGVLKPGVELV 65
Query: 71 EPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTSEGISGAIKK 130
EPT GNTGIALA VA K +PE S E++++++ALGA ++ T ++G+ GAI+K
Sbjct: 66 EPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQK 125
Query: 131 SKELAESIPDSYLPL-QFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGTA 189
++E+ S P YL L QF NP NP + T PEI ++ + F++G+G+GGT G
Sbjct: 126 AEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVT 185
Query: 190 RYLKERIPAIRLI--GVEPEGS-----ILNGGE--PGPHEIEGIGVEFIPPFFENLDIDG 240
RY+K LI VEP S L G E PGPH+I+GIG FIP + ID
Sbjct: 186 RYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLIDK 245
Query: 241 FETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALK-EAQRLPEGSQVLTIFPDVADRY 299
I++EE S R+L ++ G+L G SSGAA AALK + ++ I P +RY
Sbjct: 246 VVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERY 305
Query: 300 LSKGIY 305
LS ++
Sbjct: 306 LSTALF 311
>pdb|1TDJ| Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 48.9 bits (115), Expect = 7e-07
Identities = 54/194 (27%), Positives = 88/194 (44%), Gaps = 13/194 (6%)
Query: 28 LNSAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNTGIALALVAIK 87
L++ I K E P S K R G Y + G + +I +AGN +A + +
Sbjct: 44 LDNVILVKREDRQPVHSFKLR-GAYAMMAGLTEEQ--KAHGVITASAGNHAQGVAFSSAR 100
Query: 88 HHLKTIFVVPEKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQF 147
+K + V+P + K +R G V+ A K+ EL++ +++P F
Sbjct: 101 LGVKALIVMPTATADIKVDAVRGFGGEVL--LHGANFDEAKAKAIELSQQQGFTWVP-PF 157
Query: 148 ENPDNPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGTARYLKERIPAIRLIGVEPE 207
++P A TLA E++Q+ +L +G GG AG A +K+ +P I++I VE E
Sbjct: 158 DHP-MVIAGQGTLALELLQQ-DAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAE 215
Query: 208 GS-----ILNGGEP 216
S L+ G P
Sbjct: 216 DSACLKAALDAGHP 229
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
Length = 396
Score = 45.4 bits (106), Expect = 8e-06
Identities = 70/312 (22%), Positives = 116/312 (36%), Gaps = 58/312 (18%)
Query: 30 SAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNTGIALALVAIKHH 89
+ +Y K E L GG+ K ++G+ ++ I E AG G+A AL +
Sbjct: 70 TTLYLKREDLLHGGAHKTN---QVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 126
Query: 90 LKTIFVVPEKFSTEKQQI----MRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPL 145
LK + K E+Q MR +GA VI P G + E P SY
Sbjct: 127 LKCRIYMGAK-DVERQSPNVFRMRLMGAEVI--PVHSGSATLKDACNEALRDWPGSYETA 183
Query: 146 QFENPDNPAAY-YHTLAPEIVQELGTNLTS------------FVAGIGSGGTFAGT-ARY 191
+ + Y T+ E + +G + +A +G G G A +
Sbjct: 184 HYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADF 243
Query: 192 LKERIPAIRLIGVEPEGSILNGGEPG-PHEIEGIGVEF---------------------- 228
+ + ++ LIGVEP G + GE G P + +G+ F
Sbjct: 244 INDT--SVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISA 301
Query: 229 ------IPP---FFENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEA 279
+ P + ++ + +I+D+E + L + G++ S A ALK
Sbjct: 302 GLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMM 361
Query: 280 QRLPEGSQVLTI 291
+ PE Q+L +
Sbjct: 362 REQPEKEQLLVV 373
>pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7E|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1QOP|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
Length = 396
Score = 42.4 bits (98), Expect = 7e-05
Identities = 69/312 (22%), Positives = 115/312 (36%), Gaps = 58/312 (18%)
Query: 30 SAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNTGIALALVAIKHH 89
+ +Y K E L GG+ K ++G+ ++ I E AG G+A AL +
Sbjct: 70 TTLYLKREDLLHGGAHKTN---QVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 126
Query: 90 LKTIFVVPEKFSTEKQQI----MRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPL 145
LK + K E+Q MR +GA VI P G + E SY
Sbjct: 127 LKCRIYMGAK-DVERQSPNVFRMRLMGAEVI--PVHSGSATLKDACNEALRDWSGSYETA 183
Query: 146 QFENPDNPAAY-YHTLAPEIVQELGTNLTS------------FVAGIGSGGTFAGT-ARY 191
+ + Y T+ E + +G + +A +G G G A +
Sbjct: 184 HYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADF 243
Query: 192 LKERIPAIRLIGVEPEGSILNGGEPG-PHEIEGIGVEF---------------------- 228
+ + ++ LIGVEP G + GE G P + +G+ F
Sbjct: 244 INDT--SVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISA 301
Query: 229 ------IPP---FFENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEA 279
+ P + ++ + +I+D+E + L + G++ S A ALK
Sbjct: 302 GLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMM 361
Query: 280 QRLPEGSQVLTI 291
+ PE Q+L +
Sbjct: 362 REQPEKEQLLVV 373
>pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1TTQ|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1CW2|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylsulfinyl)-Butylphosphonic Acid
pdb|1C8V|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylthio)-Butylphosphonic Acid
pdb|1A5S|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5-Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1C29|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylthio)-1-Butenylphosphonic Acid
pdb|1C9D|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxy-4-Fluorophenylthio)-Butylphosphonic Acid
pdb|1CX9|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Aminophenylthio)-Butylphosphonic Acid
Length = 397
Score = 42.4 bits (98), Expect = 7e-05
Identities = 69/312 (22%), Positives = 115/312 (36%), Gaps = 58/312 (18%)
Query: 30 SAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNTGIALALVAIKHH 89
+ +Y K E L GG+ K ++G+ ++ I E AG G+A AL +
Sbjct: 71 TTLYLKREDLLHGGAHKTN---QVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 127
Query: 90 LKTIFVVPEKFSTEKQQI----MRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPL 145
LK + K E+Q MR +GA VI P G + E SY
Sbjct: 128 LKCRIYMGAK-DVERQSPNVFRMRLMGAEVI--PVHSGSATLKDACNEALRDWSGSYETA 184
Query: 146 QFENPDNPAAY-YHTLAPEIVQELGTNLTS------------FVAGIGSGGTFAGT-ARY 191
+ + Y T+ E + +G + +A +G G G A +
Sbjct: 185 HYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADF 244
Query: 192 LKERIPAIRLIGVEPEGSILNGGEPG-PHEIEGIGVEF---------------------- 228
+ + ++ LIGVEP G + GE G P + +G+ F
Sbjct: 245 INDT--SVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISA 302
Query: 229 ------IPP---FFENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEA 279
+ P + ++ + +I+D+E + L + G++ S A ALK
Sbjct: 303 GLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMM 362
Query: 280 QRLPEGSQVLTI 291
+ PE Q+L +
Sbjct: 363 REQPEKEQLLVV 374
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5-Fluoroindole Propanol Phosphate
pdb|2WSY|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Length = 396
Score = 42.4 bits (98), Expect = 7e-05
Identities = 69/312 (22%), Positives = 115/312 (36%), Gaps = 58/312 (18%)
Query: 30 SAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNTGIALALVAIKHH 89
+ +Y K E L GG+ K ++G+ ++ I E AG G+A AL +
Sbjct: 70 TTLYLKREDLLHGGAHKTN---QVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 126
Query: 90 LKTIFVVPEKFSTEKQQI----MRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPL 145
LK + K E+Q MR +GA VI P G + E SY
Sbjct: 127 LKCRIYMGAK-DVERQSPNVFRMRLMGAEVI--PVHSGSATLKDACNEALRDWSGSYETA 183
Query: 146 QFENPDNPAAY-YHTLAPEIVQELGTNLTS------------FVAGIGSGGTFAGT-ARY 191
+ + Y T+ E + +G + +A +G G G A +
Sbjct: 184 HYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADF 243
Query: 192 LKERIPAIRLIGVEPEGSILNGGEPG-PHEIEGIGVEF---------------------- 228
+ + ++ LIGVEP G + GE G P + +G+ F
Sbjct: 244 INDT--SVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISA 301
Query: 229 ------IPP---FFENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEA 279
+ P + ++ + +I+D+E + L + G++ S A ALK
Sbjct: 302 GLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMM 361
Query: 280 QRLPEGSQVLTI 291
+ PE Q+L +
Sbjct: 362 REQPEKEQLLVV 373
>pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+
pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
Length = 397
Score = 42.4 bits (98), Expect = 7e-05
Identities = 69/312 (22%), Positives = 115/312 (36%), Gaps = 58/312 (18%)
Query: 30 SAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNTGIALALVAIKHH 89
+ +Y K E L GG+ K ++G+ ++ I E AG G+A AL +
Sbjct: 71 TTLYLKREDLLHGGAHKTN---QVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 127
Query: 90 LKTIFVVPEKFSTEKQQI----MRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPL 145
LK + K E+Q MR +GA VI P G + E SY
Sbjct: 128 LKCRIYMGAK-DVERQSPNVFRMRLMGAEVI--PVHSGSATLKDACNEALRDWSGSYETA 184
Query: 146 QFENPDNPAAY-YHTLAPEIVQELGTNLTS------------FVAGIGSGGTFAGT-ARY 191
+ + Y T+ E + +G + +A +G G G A +
Sbjct: 185 HYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADF 244
Query: 192 LKERIPAIRLIGVEPEGSILNGGEPG-PHEIEGIGVEF---------------------- 228
+ + ++ LIGVEP G + GE G P + +G+ F
Sbjct: 245 INDT--SVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISA 302
Query: 229 ------IPP---FFENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEA 279
+ P + ++ + +I+D+E + L + G++ S A ALK
Sbjct: 303 GLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMM 362
Query: 280 QRLPEGSQVLTI 291
+ PE Q+L +
Sbjct: 363 REQPEKEQLLVV 374
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
Length = 396
Score = 42.0 bits (97), Expect = 9e-05
Identities = 69/312 (22%), Positives = 115/312 (36%), Gaps = 58/312 (18%)
Query: 30 SAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNTGIALALVAIKHH 89
+ +Y K E L GG+ K ++G+ ++ I E AG G+A AL +
Sbjct: 70 TTLYLKREDLLHGGAHKTN---QVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 126
Query: 90 LKTIFVVPEKFSTEKQQI----MRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPL 145
LK + K E+Q MR +GA VI P G + E SY
Sbjct: 127 LKCRIYMGAK-DVERQSPNVFRMRLMGAEVI--PVHSGSATLKDACNEALADWSGSYETA 183
Query: 146 QFENPDNPAAY-YHTLAPEIVQELGTNLTS------------FVAGIGSGGTFAGT-ARY 191
+ + Y T+ E + +G + +A +G G G A +
Sbjct: 184 HYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADF 243
Query: 192 LKERIPAIRLIGVEPEGSILNGGEPG-PHEIEGIGVEF---------------------- 228
+ + ++ LIGVEP G + GE G P + +G+ F
Sbjct: 244 INDT--SVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISA 301
Query: 229 ------IPP---FFENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEA 279
+ P + ++ + +I+D+E + L + G++ S A ALK
Sbjct: 302 GLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMM 361
Query: 280 QRLPEGSQVLTI 291
+ PE Q+L +
Sbjct: 362 REQPEKEQLLVV 373
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
Tryptophan Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
Length = 396
Score = 41.2 bits (95), Expect = 1e-04
Identities = 69/312 (22%), Positives = 115/312 (36%), Gaps = 58/312 (18%)
Query: 30 SAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNTGIALALVAIKHH 89
+ +Y K E L GG+ K ++G+ ++ I E AG G+A AL +
Sbjct: 70 TTLYLKREDLLHGGAHKTN---QVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 126
Query: 90 LKTIFVVPEKFSTEKQQI----MRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPL 145
LK + K E+Q MR +GA VI P G + E SY
Sbjct: 127 LKCRIYMGAK-DVERQSPNVFRMRLMGAEVI--PVHSGSATLKDLWNEALRDWSGSYETA 183
Query: 146 QFENPDNPAAY-YHTLAPEIVQELGTNLTS------------FVAGIGSGGTFAGT-ARY 191
+ + Y T+ E + +G + +A +G G G A +
Sbjct: 184 HYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADF 243
Query: 192 LKERIPAIRLIGVEPEGSILNGGEPG-PHEIEGIGVEF---------------------- 228
+ + ++ LIGVEP G + GE G P + +G+ F
Sbjct: 244 INDT--SVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISA 301
Query: 229 ------IPP---FFENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEA 279
+ P + ++ + +I+D+E + L + G++ S A ALK
Sbjct: 302 GLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMM 361
Query: 280 QRLPEGSQVLTI 291
+ PE Q+L +
Sbjct: 362 REQPEKEQLLVV 373
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87 ->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TRS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
pdb|2TSY|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 40.8 bits (94), Expect = 2e-04
Identities = 68/312 (21%), Positives = 114/312 (35%), Gaps = 58/312 (18%)
Query: 30 SAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNTGIALALVAIKHH 89
+ +Y K E L GG+ ++G+ ++ I E AG G+A AL +
Sbjct: 71 TTLYLKREDLLHGGA---HTTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 127
Query: 90 LKTIFVVPEKFSTEKQQI----MRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPL 145
LK + K E+Q MR +GA VI P G + E SY
Sbjct: 128 LKCRIYMGAK-DVERQSPNVFRMRLMGAEVI--PVHSGSATLKDACNEALRDWSGSYETA 184
Query: 146 QFENPDNPAAY-YHTLAPEIVQELGTNLTS------------FVAGIGSGGTFAGT-ARY 191
+ + Y T+ E + +G + +A +G G G A +
Sbjct: 185 HYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADF 244
Query: 192 LKERIPAIRLIGVEPEGSILNGGEPG-PHEIEGIGVEF---------------------- 228
+ + ++ LIGVEP G + GE G P + +G+ F
Sbjct: 245 INDT--SVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISA 302
Query: 229 ------IPP---FFENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEA 279
+ P + ++ + +I+D+E + L + G++ S A ALK
Sbjct: 303 GLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMM 362
Query: 280 QRLPEGSQVLTI 291
+ PE Q+L +
Sbjct: 363 REQPEKEQLLVV 374
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 40.8 bits (94), Expect = 2e-04
Identities = 68/312 (21%), Positives = 114/312 (35%), Gaps = 58/312 (18%)
Query: 30 SAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNTGIALALVAIKHH 89
+ +Y K E L GG+ ++G+ ++ I E AG G+A AL +
Sbjct: 71 TTLYLKREDLLHGGA---HTTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLG 127
Query: 90 LKTIFVVPEKFSTEKQQI----MRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPL 145
LK + K E+Q MR +GA VI P G + E SY
Sbjct: 128 LKCRIYMGAK-DVERQSPNVFRMRLMGAEVI--PVHSGSATLKDACNEALRDWSGSYETA 184
Query: 146 QFENPDNPAAY-YHTLAPEIVQELGTNLTS------------FVAGIGSGGTFAGT-ARY 191
+ + Y T+ E + +G + +A +G G G A +
Sbjct: 185 HYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADF 244
Query: 192 LKERIPAIRLIGVEPEGSILNGGEPG-PHEIEGIGVEF---------------------- 228
+ + ++ LIGVEP G + GE G P + +G+ F
Sbjct: 245 INDT--SVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISA 302
Query: 229 ------IPP---FFENLDIDGFETISDEEGFSYTRKLAKKNGLLVGSSSGAAFVAALKEA 279
+ P + ++ + +I+D+E + L + G++ S A ALK
Sbjct: 303 GLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMM 362
Query: 280 QRLPEGSQVLTI 291
+ PE Q+L +
Sbjct: 363 REQPEKEQLLVV 374
>pdb|1AZO| Dna Mismatch Repair Protein Muth From E. Coli
Length = 232
Score = 28.9 bits (63), Expect = 0.77
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 70 IEPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTSEGISGAIK 129
+ P GN+G+ ++H LK + +P + R +G+ ++ +P E +
Sbjct: 100 VAPLTGNSGVTWETSHVRHKLKRVLWIPVEGEASIPLAQRRVGSPLLWSPNEEEDRQLRE 159
Query: 130 KSKELAESI 138
+EL + I
Sbjct: 160 DWEELXDXI 168
>pdb|2AZO|B Chain B, Dna Mismatch Repair Protein Muth From E. Coli
pdb|2AZO|A Chain A, Dna Mismatch Repair Protein Muth From E. Coli
Length = 232
Score = 28.1 bits (61), Expect = 1.3
Identities = 12/53 (22%), Positives = 25/53 (46%)
Query: 70 IEPTAGNTGIALALVAIKHHLKTIFVVPEKFSTEKQQIMRALGALVINTPTSE 122
+ P GN+G+ ++H LK + +P + R +G+ ++ +P E
Sbjct: 100 VAPLTGNSGVTWETSHVRHKLKRVLWIPVEGERSIPLAQRRVGSPLLWSPNEE 152
>pdb|1ABR|B Chain B, Abrin-A Complexed With Two Sugar Chains
Length = 267
Score = 26.9 bits (58), Expect = 2.9
Identities = 12/36 (33%), Positives = 22/36 (60%)
Query: 30 SAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITS 65
SA+ E + GG++ + +YL+ +G++TG TS
Sbjct: 108 SALVLSAESSSMGGTLTVQTNEYLMRQGWRTGNNTS 143
>pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|D Chain D, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDY|A Chain A, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|B Chain B, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|C Chain C, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|D Chain D, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDZ|B Chain B, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|C Chain C, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
Length = 297
Score = 26.9 bits (58), Expect = 2.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 260 NGLLVGSSSGAAFVAALKEAQRLPE 284
+GL VG S+G AFV +L E +++ E
Sbjct: 40 DGLYVGGSTGEAFVQSLSEREQVLE 64
>pdb|1CII| Colicin Ia
Length = 602
Score = 26.9 bits (58), Expect = 2.9
Identities = 23/105 (21%), Positives = 41/105 (38%), Gaps = 7/105 (6%)
Query: 96 VPEKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENPDNPAA 155
V EK+ + +Q+ R + + A+K ++ I N + AA
Sbjct: 441 VSEKYGAKAEQLAREMAGQAKGKKI-RNVEEALKTYEKYRADINKKI------NAKDRAA 493
Query: 156 YYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGTARYLKERIPAIR 200
L + ++ +NL F G+G G F A ++ E A+R
Sbjct: 494 IAAALESVKLSDISSNLNRFSRGLGYAGKFTSLADWITEFGKAVR 538
>pdb|1NAL|1 Chain 1, Mol_id: 1; Molecule: N-Acetylneuraminate Lyase; Chain: 1,
2, 3, 4; Ec: 4.1.3.3
pdb|1NAL|2 Chain 2, Mol_id: 1; Molecule: N-Acetylneuraminate Lyase; Chain: 1,
2, 3, 4; Ec: 4.1.3.3
pdb|1NAL|3 Chain 3, Mol_id: 1; Molecule: N-Acetylneuraminate Lyase; Chain: 1,
2, 3, 4; Ec: 4.1.3.3
pdb|1NAL|4 Chain 4, Mol_id: 1; Molecule: N-Acetylneuraminate Lyase; Chain: 1,
2, 3, 4; Ec: 4.1.3.3
Length = 297
Score = 26.9 bits (58), Expect = 2.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 260 NGLLVGSSSGAAFVAALKEAQRLPE 284
+GL VG S+G AFV +L E +++ E
Sbjct: 40 DGLYVGGSTGEAFVQSLSEREQVLE 64
>pdb|1PFK|A Chain A, Phosphofructokinase (E.C.2.7.1.11) (R-State) Complex With
Fructose-1,6-Bisphosphate And ADP(Slash)Mg++
pdb|1PFK|B Chain B, Phosphofructokinase (E.C.2.7.1.11) (R-State) Complex With
Fructose-1,6-Bisphosphate And ADP(Slash)Mg++
pdb|2PFK|A Chain A, Phosphofructokinase (E.C.2.7.1.11)
pdb|2PFK|B Chain B, Phosphofructokinase (E.C.2.7.1.11)
Length = 320
Score = 26.6 bits (57), Expect = 3.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 179 IGSGGTFAGTARYLKERIPAIRLIGVE 205
I GGTF G+AR+ + R IR + +E
Sbjct: 62 INRGGTFLGSARFPEFRDENIRAVAIE 88
>pdb|2PFK|C Chain C, Phosphofructokinase (E.C.2.7.1.11)
Length = 302
Score = 26.6 bits (57), Expect = 3.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 179 IGSGGTFAGTARYLKERIPAIRLIGVE 205
I GGTF G+AR+ + R IR + +E
Sbjct: 62 INRGGTFLGSARFPEFRDENIRAVAIE 88
>pdb|2PFK|D Chain D, Phosphofructokinase (E.C.2.7.1.11)
Length = 305
Score = 26.6 bits (57), Expect = 3.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 179 IGSGGTFAGTARYLKERIPAIRLIGVE 205
I GGTF G+AR+ + R IR + +E
Sbjct: 62 INRGGTFLGSARFPEFRDENIRAVAIE 88
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 26.2 bits (56), Expect = 5.0
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 248 EGFSYTRKLAKKNGLLVGSSSGAAFVAALKEAQRLPEGSQVL---TIFPDVADRYLSKGI 304
+G ++T + + L+ + SG + VAAL + P G Q+L P RYL + +
Sbjct: 34 QGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV 93
>pdb|1J5X|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm0813) From Thermotoga Maritima At 1.8 A Resolution
Length = 342
Score = 25.8 bits (55), Expect = 6.5
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 163 EIVQELGTNLTSFVAGIGSGGTF--AGTARYLKERIPAIRLIGVEPEGSI 210
EI E+ NLT V +G G ++ A T Y ER+ IR + P G +
Sbjct: 42 EIFSEIQKNLTDEVLFVGCGSSYNLALTISYYFERVLKIRTKAI-PAGEV 90
>pdb|4AAH|A Chain A, Methanol Dehydrogenase From Methylophilus W3a1
pdb|4AAH|C Chain C, Methanol Dehydrogenase From Methylophilus W3a1
Length = 571
Score = 25.4 bits (54), Expect = 8.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 42 GGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNT 77
G VK + +L+ KTGKI + + +P G+T
Sbjct: 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGST 151
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 25.4 bits (54), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 234 ENLDIDGFETISDEEGFSYTRKLAKKN---GLLVGSSSGAAFVAALKEAQRLPEGSQ 287
E D+D ++D G T + GL+VG+ S A ++ +K + + EG Q
Sbjct: 645 EEFDLDVVAVVNDTVGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVE-MVEGDQ 700
>pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
Length = 917
Score = 25.4 bits (54), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 234 ENLDIDGFETISDEEGFSYTRKLAKKN---GLLVGSSSGAAFVAALKEAQRLPEGSQ 287
E D+D ++D G T + GL+VG+ S A ++ +K + + EG Q
Sbjct: 645 EEFDLDVVAVVNDTVGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVE-MVEGDQ 700
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 25.4 bits (54), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 234 ENLDIDGFETISDEEGFSYTRKLAKKN---GLLVGSSSGAAFVAALKEAQRLPEGSQ 287
E D+D ++D G T + GL+VG+ S A ++ +K + + EG Q
Sbjct: 645 EEFDLDVVAVVNDTVGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVE-MVEGDQ 700
>pdb|1M8Z|A Chain A, Crystal Structure Of A Pumilio-Homology Domain
pdb|1M8W|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre1-19 Rna
pdb|1M8W|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre1-19 Rna
pdb|1M8X|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre1-14 Rna
pdb|1M8X|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre1-14 Rna
pdb|1M8Y|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre2-10 Rna
pdb|1M8Y|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre2-10 Rna
pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain
Length = 349
Score = 25.4 bits (54), Expect = 8.5
Identities = 24/89 (26%), Positives = 38/89 (41%), Gaps = 12/89 (13%)
Query: 23 DYPIPLNSAIYAKLEHLNPGGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNTGIALA 82
D +P+ ++ E L V+D+ G Y+I + G+ K+ I+ GN
Sbjct: 193 DQTLPILEELHQHTEQL-----VQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN-----V 242
Query: 83 LVAIKHHLKTIFVVPEKFSTEKQQIMRAL 111
LV +H K V EK T + RA+
Sbjct: 243 LVLSQH--KFASNVVEKCVTHASRTERAV 269
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 25.4 bits (54), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 234 ENLDIDGFETISDEEGFSYTRKLAKKN---GLLVGSSSGAAFVAALKEAQRLPEGSQ 287
E D+D ++D G T + GL+VG+ S A ++ +K + + EG Q
Sbjct: 645 EEFDLDVVAVVNDTVGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVE-MVEGDQ 700
>pdb|1G72|A Chain A, Catalytic Mechanism Of Quinoprotein Methanol
Dehydrogenase: A Theoretical And X-Ray Crystallographic
Investigation
pdb|1G72|C Chain C, Catalytic Mechanism Of Quinoprotein Methanol
Dehydrogenase: A Theoretical And X-Ray Crystallographic
Investigation
Length = 573
Score = 25.4 bits (54), Expect = 8.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 42 GGSVKDRLGQYLIGEGFKTGKITSKTTIIEPTAGNT 77
G VK + +L+ KTGKI + + +P G+T
Sbjct: 118 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGST 153
>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|B Chain B, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|C Chain C, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|D Chain D, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|E Chain E, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|F Chain F, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
Length = 345
Score = 25.4 bits (54), Expect = 8.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 119 PTSEGISGAIKKSKELAESIPDSY 142
P S+G +++ +E A+ IPD Y
Sbjct: 53 PASDGFDEQVRELRERAKEIPDDY 76
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.138 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,906,465
Number of Sequences: 13198
Number of extensions: 89421
Number of successful extensions: 279
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 43
length of query: 306
length of database: 2,899,336
effective HSP length: 88
effective length of query: 218
effective length of database: 1,737,912
effective search space: 378864816
effective search space used: 378864816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.4 bits)