BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645677|ref|NP_207854.1| glucose-inhibited division
protein (gidB) [Helicobacter pylori 26695]
(178 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JSX|A Chain A, Crystal Structure Of The Escherichia Co... 87 1e-18
pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavon... 27 1.3
pdb|1EG0|C Chain C, Fitting Of Components With Known Struct... 26 2.3
pdb|1G1X|A Chain A, Structure Of Ribosomal Proteins S15, S6... 26 2.3
pdb|1FJG|F Chain F, Structure Of The Thermus Thermophilus 3... 26 2.3
pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomet... 26 3.0
pdb|1CQM|A Chain A, Protein Aggregation And Alzheimer's Dis... 26 3.0
pdb|1QJH|A Chain A, Protein Aggregation And Alzheimer's Dis... 25 3.9
pdb|1AKN| Structure Of Bile-Salt Activated Lipase 25 6.7
pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt A... 25 6.7
pdb|1EEX|A Chain A, Crystal Structure Of The Diol Dehydrata... 24 8.7
pdb|1LOU|A Chain A, Ribosomal Protein S6 24 8.7
pdb|2BCE| Cholesterol Esterase From Bos Taurus 24 8.7
>pdb|1JSX|A Chain A, Crystal Structure Of The Escherichia Coli
Glucose-Inhibited Division Protein B (Gidb)
Length = 207
Score = 86.7 bits (213), Expect = 1e-18
Identities = 49/149 (32%), Positives = 87/149 (57%), Gaps = 2/149 (1%)
Query: 8 YARILLEWNQTHNLSGAKNLSE-LEPQITDALKPLEFIKDFKSCLDIGSGAGLPAIPLAL 66
Y +L +WN+ +NL+ ++ +E L I D++ +++ + +D+G+G GLP IPL++
Sbjct: 27 YVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQG-ERFIDVGTGPGLPGIPLSI 85
Query: 67 EKPEVKFILLEPRIKRAAFLNYLKSVLPLKNIEIIKKRLEDYQNLLQVDLITSRAVASSS 126
+PE F LL+ KR FL ++ L L+NIE ++ R+E++ + D + SRA AS +
Sbjct: 86 VRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLN 145
Query: 127 FLIEKSQRFLKDKGYFLFYKGEQLKDEIA 155
++ ++G F KG+ +DEIA
Sbjct: 146 DMVSWCHHLPGEQGRFYALKGQMPEDEIA 174
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 26.9 bits (58), Expect = 1.3
Identities = 18/66 (27%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Query: 13 LEWNQTHNLSGAKNLSELEPQITDALKPLEFIKD-FKSCLDIGSGAGLPAIPLALEKPEV 71
L+ N +N S ++ I AL+ +F+ D +S +D+G G G A + P++
Sbjct: 154 LDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKL 213
Query: 72 KFILLE 77
K I+ +
Sbjct: 214 KCIVFD 219
>pdb|1EG0|C Chain C, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
pdb|1QD7|E Chain E, Partial Model For 30s Ribosomal Subunit
Length = 97
Score = 26.2 bits (56), Expect = 2.3
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 99 EIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFLFYKGEQLKDEI--AC 156
EII++ LE+Y +V+ + + ++ I K + GYFL+Y+ E +D +
Sbjct: 24 EIIQRALENYG--ARVEKVEELGLRRLAYPIAKDPQ-----GYFLWYQVEMPEDRVNDLA 76
Query: 157 KDTECFMHQKRVYFYKSKE 175
++ + +RV KS+E
Sbjct: 77 RELRIRDNVRRVMVVKSQE 95
>pdb|1G1X|A Chain A, Structure Of Ribosomal Proteins S15, S6, S18, And 16s
Ribosomal Rna
pdb|1G1X|F Chain F, Structure Of Ribosomal Proteins S15, S6, S18, And 16s
Ribosomal Rna
Length = 98
Score = 26.2 bits (56), Expect = 2.3
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 99 EIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFLFYKGEQLKDEI--AC 156
EII++ LE+Y +V+ + + ++ I K + GYFL+Y+ E +D +
Sbjct: 24 EIIQRALENYG--ARVEKVEELGLRRLAYPIAKDPQ-----GYFLWYQVEMPEDRVNDLA 76
Query: 157 KDTECFMHQKRVYFYKSKE 175
++ + +RV KS+E
Sbjct: 77 RELRIRDNVRRVMVVKSQE 95
>pdb|1FJG|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1J5E|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1IBL|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1HR0|F Chain F, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNZ|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1IBM|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1HNW|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|F Chain F, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1RIS| Ribosomal Protein S6
pdb|1I94|F Chain F, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1FKA|F Chain F, Structure Of Functionally Activated Small Ribosomal
Subunit At 3.3 A Resolution
pdb|1I96|F Chain F, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|F Chain F, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|F Chain F, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
pdb|1JGQ|I Chain I, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1GIX|I Chain I, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|I Chain I, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|I Chain I, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
Length = 101
Score = 26.2 bits (56), Expect = 2.3
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 99 EIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFLFYKGEQLKDEI--AC 156
EII++ LE+Y +V+ + + ++ I K + GYFL+Y+ E +D +
Sbjct: 24 EIIQRALENYG--ARVEKVEELGLRRLAYPIAKDPQ-----GYFLWYQVEMPEDRVNDLA 76
Query: 157 KDTECFMHQKRVYFYKSKE 175
++ + +RV KS+E
Sbjct: 77 RELRIRDNVRRVMVVKSQE 95
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 25.8 bits (55), Expect = 3.0
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 13 LEWNQTHNLSGAKNLSELEPQITDALKPLEFIKD-FKSCLDIGSGAGLPAIPLALEKPEV 71
L+ N +N S + I AL+ +F+ D +S +D+G G G A + P++
Sbjct: 154 LDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKL 213
Query: 72 KFILLE 77
K I+ +
Sbjct: 214 KCIVFD 219
>pdb|1CQM|A Chain A, Protein Aggregation And Alzheimer's Disease:
Crystallographic Analysis Of The Phenomenon. Engineered
Version Of The Ribosomal Protein S6 Used As A Stable
Scaffold To Study Oligomerization.
pdb|1CQM|B Chain B, Protein Aggregation And Alzheimer's Disease:
Crystallographic Analysis Of The Phenomenon. Engineered
Version Of The Ribosomal Protein S6 Used As A Stable
Scaffold To Study Oligomerization.
pdb|1CQN|A Chain A, Protein Aggregation And Alzheimer's Disease:
Crystallographic Analysis Of The Phenomenon. Engineered
Version Of The Ribosomal Protein S6 Used As A Stable
Scaffold To Study Oligomerization.
pdb|1CQN|B Chain B, Protein Aggregation And Alzheimer's Disease:
Crystallographic Analysis Of The Phenomenon. Engineered
Version Of The Ribosomal Protein S6 Used As A Stable
Scaffold To Study Oligomerization
Length = 101
Score = 25.8 bits (55), Expect = 3.0
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 99 EIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFLFYKGEQLKDEI--AC 156
EII++ LE+Y +V+ + + ++ I K + GYFL+Y+ E +D +
Sbjct: 24 EIIQRALENYG--ARVEKVAILGLRRLAYPIAKDPQ-----GYFLWYQVEMPEDRVNDLA 76
Query: 157 KDTECFMHQKRVYFYKSKE 175
++ + +RV KS+E
Sbjct: 77 RELRIRDNVRRVMVVKSQE 95
>pdb|1QJH|A Chain A, Protein Aggregation And Alzheimer's Disease.
Crystallographic Analysis Of The Phenomenon. Engineered
Version Of The Ribosomal Protein S6 Used As A Stable
Scaffold To Study Oligomerization
Length = 101
Score = 25.4 bits (54), Expect = 3.9
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 99 EIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFLFYKGEQLKDEI--AC 156
EII++ LE+Y +V+ + + ++ I K + GYFL+Y+ E +D +
Sbjct: 24 EIIQRALENYG--ARVEKVAILGLMVLAYPIAKDPQ-----GYFLWYQVEMPEDRVNDLA 76
Query: 157 KDTECFMHQKRVYFYKSKE 175
++ + +RV KS+E
Sbjct: 77 RELRIRDNVRRVMVVKSQE 95
>pdb|1AKN| Structure Of Bile-Salt Activated Lipase
Length = 579
Score = 24.6 bits (52), Expect = 6.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 47 FKSCLDIGSGAGLPAIPLALEKPE 70
F +DI G A P ALEKPE
Sbjct: 23 FGDSIDIFKGIPFAAAPKALEKPE 46
>pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
pdb|1AQL|B Chain B, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
Length = 532
Score = 24.6 bits (52), Expect = 6.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 47 FKSCLDIGSGAGLPAIPLALEKPE 70
F +DI G A P ALEKPE
Sbjct: 23 FGDSIDIFKGIPFAAAPKALEKPE 46
>pdb|1EEX|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EEX|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EGV|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1EGV|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1EGM|A Chain A, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1EGM|L Chain L, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1DIO|A Chain A, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1DIO|L Chain L, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
Length = 554
Score = 24.3 bits (51), Expect = 8.7
Identities = 8/38 (21%), Positives = 23/38 (60%)
Query: 64 LALEKPEVKFILLEPRIKRAAFLNYLKSVLPLKNIEII 101
+A++ ++ +L +P +KR+ + ++ P K +E++
Sbjct: 80 MAMDSVKLANMLCDPNVKRSEIVPLTTAMTPAKIVEVV 117
>pdb|1LOU|A Chain A, Ribosomal Protein S6
Length = 101
Score = 24.3 bits (51), Expect = 8.7
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 99 EIIKKRLEDYQNLLQVDLITSRAVASSSFLIEKSQRFLKDKGYFLFYKGEQLKDEI--AC 156
EII++ E+Y +V+ + + ++ I K + GYFL+Y+ E +D +
Sbjct: 24 EIIQRAAENYG--ARVEKVEELGLRRLAYPIAKDPQ-----GYFLWYQVEMPEDRVNDLA 76
Query: 157 KDTECFMHQKRVYFYKSKE 175
++ + +RV KS+E
Sbjct: 77 RELRIRDNVRRVMVVKSQE 95
>pdb|2BCE| Cholesterol Esterase From Bos Taurus
Length = 532
Score = 24.3 bits (51), Expect = 8.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 47 FKSCLDIGSGAGLPAIPLALEKPE 70
F +DI G A P ALEKPE
Sbjct: 23 FGDSVDIFKGIPFAAAPKALEKPE 46
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.139 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 984,219
Number of Sequences: 13198
Number of extensions: 38135
Number of successful extensions: 78
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 13
length of query: 178
length of database: 2,899,336
effective HSP length: 82
effective length of query: 96
effective length of database: 1,817,100
effective search space: 174441600
effective search space used: 174441600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)