BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645678|ref|NP_207855.1| hypothetical protein
[Helicobacter pylori 26695]
         (93 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1E88|A  Chain A, Solution Structure Of 6f11f22f2, A Comp...    24  2.4
pdb|2FN2|    Solution Nmr Structure Of The Glycosylated Seco...    24  2.4
pdb|1JJD|A  Chain A, Nmr Structure Of The Cyanobacterial Met...    24  2.4
pdb|1KRH|A  Chain A, X-Ray Stucture Of Benzoate Dioxygenase ...    24  3.1

>pdb|1E88|A Chain A, Solution Structure Of 6f11f22f2, A Compact Three-Module
           Fragment Of The Gelatin-Binding Domain Of Human
           Fibronectin
 pdb|1E8B|A Chain A, Solution Structure Of 6f11f22f2, A Compact Three-Module
           Fragment Of The Gelatin-Binding Domain Of Human
           Fibronectin
          Length = 160

 Score = 24.3 bits (51), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 44  DNHSYTQQTPKELEDHMIVCSKCQTY 69
           +NH+YT  T +   D+M  C   Q Y
Sbjct: 123 NNHNYTDCTSEGRRDNMKWCGTTQNY 148



>pdb|2FN2|   Solution Nmr Structure Of The Glycosylated Second Type Two
          Module Of Fibronectin, 20 Structures
          Length = 59

 Score = 24.3 bits (51), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 44 DNHSYTQQTPKELEDHMIVCSKCQTY 69
          +NH+YT  T +   D+M  C   Q Y
Sbjct: 22 NNHNYTDCTSEGRRDNMKWCGTTQNY 47



>pdb|1JJD|A Chain A, Nmr Structure Of The Cyanobacterial Metallothionein Smta
          Length = 55

 Score = 24.3 bits (51), Expect = 2.4
 Identities = 10/26 (38%), Positives = 11/26 (41%)

Query: 63 CSKCQTYVSSKDAIYSGAVAYCSETC 88
          C  C   V    AI    + YCSE C
Sbjct: 10 CEPCLCNVDPSKAIDRNGLYYCSEAC 35



>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
 pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
          Length = 338

 Score = 23.9 bits (50), Expect = 3.1
 Identities = 12/47 (25%), Positives = 24/47 (50%), Gaps = 5/47 (10%)

Query: 42  PKDNHSYTQQTPKELEDHMIVCSKCQTYVSSKDAIYSGAVAYCSETC 88
           P+DN+     TP+E +   ++  +C+    + DA++   +   SE C
Sbjct: 61  PEDNYIEDALTPEEAQQGYVLACQCR---PTSDAVFQ--IQASSEVC 102



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.325    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,800
Number of Sequences: 13198
Number of extensions: 18468
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 93
length of database: 2,899,336
effective HSP length: 69
effective length of query: 24
effective length of database: 1,988,674
effective search space: 47728176
effective search space used: 47728176
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)