BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645679|ref|NP_207856.1| hypothetical protein
[Helicobacter pylori 26695]
(135 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EVU|A Chain A, Human Factor Xiii With Calcium Bound In... 26 1.4
pdb|1FIE|B Chain B, Recombinant Human Coagulation Factor Xi... 26 1.4
pdb|1F13|A Chain A, Recombinant Human Cellular Coagulation ... 26 1.4
pdb|1QEZ|F Chain F, Sulfolobus Acidocaldarius Inorganic Pyr... 25 4.0
pdb|1KBS| Solution Structure Of Cardiotoxin Iv, Nmr, 1 St... 24 6.8
pdb|1CRE| Cardiotoxin Ii (Nmr, Minimized Average Structur... 24 6.8
pdb|1BF5|A Chain A, Stat-1 Dna Complex 23 8.9
>pdb|1EVU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1EVU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
Length = 731
Score = 26.2 bits (56), Expect = 1.4
Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 9/65 (13%)
Query: 54 FSVIFLSHKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLL-DSKILFFMDLND- 111
+ V+ S ETDT+ LFN + ++ D ++ Y+L D ++F+ ++ND
Sbjct: 167 YGVLRTSRNPETDTYILFNPWCEDDAVYLD------NEKEREEYVLNDIGVIFYGEVNDI 220
Query: 112 -TELW 115
T W
Sbjct: 221 KTRSW 225
>pdb|1FIE|B Chain B, Recombinant Human Coagulation Factor Xiii
pdb|1FIE|A Chain A, Recombinant Human Coagulation Factor Xiii
Length = 731
Score = 26.2 bits (56), Expect = 1.4
Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 9/65 (13%)
Query: 54 FSVIFLSHKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLL-DSKILFFMDLND- 111
+ V+ S ETDT+ LFN + ++ D ++ Y+L D ++F+ ++ND
Sbjct: 167 YGVLRTSRNPETDTYILFNPWCEDDAVYLD------NEKEREEYVLNDIGVIFYGEVNDI 220
Query: 112 -TELW 115
T W
Sbjct: 221 KTRSW 225
>pdb|1F13|A Chain A, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1F13|B Chain B, Recombinant Human Cellular Coagulation Factor Xiii
pdb|1GGT|A Chain A, Coagulation Factor Xiii (A-Subunit Zymogen) (E.C.2.3.2.13)
(Protein-Glutamine Gamma-Glutamyltransferase A Chain)
pdb|1GGT|B Chain B, Coagulation Factor Xiii (A-Subunit Zymogen) (E.C.2.3.2.13)
(Protein-Glutamine Gamma-Glutamyltransferase A Chain)
pdb|1GGU|B Chain B, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1GGY|B Chain B, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1QRK|B Chain B, Human Factor Xiii With Strontium Bound In The Ion Site
pdb|1GGY|A Chain A, Human Factor Xiii With Ytterbium Bound In The Ion Site
pdb|1GGU|A Chain A, Human Factor Xiii With Calcium Bound In The Ion Site
pdb|1QRK|A Chain A, Human Factor Xiii With Strontium Bound In The Ion Site
Length = 731
Score = 26.2 bits (56), Expect = 1.4
Identities = 18/65 (27%), Positives = 32/65 (48%), Gaps = 9/65 (13%)
Query: 54 FSVIFLSHKIETDTFFLFNAFKPLYCIFKDIKQAILAQQHATNYLL-DSKILFFMDLND- 111
+ V+ S ETDT+ LFN + ++ D ++ Y+L D ++F+ ++ND
Sbjct: 167 YGVLRTSRNPETDTYILFNPWCEDDAVYLD------NEKEREEYVLNDIGVIFYGEVNDI 220
Query: 112 -TELW 115
T W
Sbjct: 221 KTRSW 225
>pdb|1QEZ|F Chain F, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|B Chain B, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|D Chain D, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|E Chain E, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|C Chain C, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|A Chain A, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase
Length = 173
Score = 24.6 bits (52), Expect = 4.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 14 FVFIKNTDAIHSNTNNDIVCFEAHPKNLELAKY 46
F IK+ + + T N IV F H K LE KY
Sbjct: 114 FSNIKDINDLPQATKNKIVHFFEHYKELEPGKY 146
>pdb|1KBS| Solution Structure Of Cardiotoxin Iv, Nmr, 1 Structure
pdb|1KBT| Solution Structure Of Cardiotoxin Iv, Nmr, 12 Structures
Length = 60
Score = 23.9 bits (50), Expect = 6.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 33 CFEAHPKNLELAKYCCENS 51
C + PKN L KY C N+
Sbjct: 38 CIDVCPKNSALVKYVCCNT 56
>pdb|1CRE| Cardiotoxin Ii (Nmr, Minimized Average Structure)
pdb|1CRF| Cardiotoxin Ii (Nmr, 12 Structures)
Length = 60
Score = 23.9 bits (50), Expect = 6.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 33 CFEAHPKNLELAKYCCENS 51
C + PKN L KY C N+
Sbjct: 38 CIDVCPKNSALVKYVCCNT 56
>pdb|1BF5|A Chain A, Stat-1 Dna Complex
Length = 545
Score = 23.5 bits (49), Expect = 8.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 84 IKQAILAQQHATNYLLDSKILFFMDLNDTELWEICAKSQIDGVISK 129
+K +L + NY L K+LF D+N+ + K I G +K
Sbjct: 194 VKLRLLVKLQELNYNLKVKVLFDKDVNERNTVKGFRKFNILGTHTK 239
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.327 0.141 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 747,098
Number of Sequences: 13198
Number of extensions: 26374
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 7
length of query: 135
length of database: 2,899,336
effective HSP length: 79
effective length of query: 56
effective length of database: 1,856,694
effective search space: 103974864
effective search space used: 103974864
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)