BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645680|ref|NP_207857.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(200 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiat... 28 0.72
pdb|1L8B|A Chain A, Cocrystal Structure Of The Messenger Rn... 28 0.72
pdb|1G6A|A Chain A, Pse-4 Carbenicillinase, R234k Mutant 25 8.0
pdb|1G68|A Chain A, Pse-4 Carbenicillinase, Wild Type 25 8.0
>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-Methyl Gpppa
pdb|1IPC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-Methyl Gtp
Length = 217
Score = 28.1 bits (61), Expect = 0.72
Identities = 14/43 (32%), Positives = 26/43 (59%), Gaps = 5/43 (11%)
Query: 101 YAKNPI-NRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDF 142
Y K+P+ NRWA +F + TW N + +++ +D+++DF
Sbjct: 34 YIKHPLQNRWALWFFKNDKSKTWQANLR----LISKFDTVEDF 72
>pdb|1L8B|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
pdb|1L8B|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
pdb|1EJ1|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJH|C Chain C, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJ4|A Chain A, Cocrystal Structure Of Eif4e4E-Bp1 Peptide
pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJH|B Chain B, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|A Chain A, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|D Chain D, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
Length = 190
Score = 28.1 bits (61), Expect = 0.72
Identities = 14/43 (32%), Positives = 26/43 (59%), Gaps = 5/43 (11%)
Query: 101 YAKNPI-NRWAFFFGLQLAANTWILNNKVKDLVVNTWDSLKDF 142
Y K+P+ NRWA +F + TW N + +++ +D+++DF
Sbjct: 7 YIKHPLQNRWALWFFKNDKSKTWQANLR----LISKFDTVEDF 45
>pdb|1G6A|A Chain A, Pse-4 Carbenicillinase, R234k Mutant
Length = 271
Score = 24.6 bits (52), Expect = 8.0
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 111 FFFGLQLAA------NTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVL 164
F FG L+ +W++NN+V N S+ ++ G FG + T V+
Sbjct: 171 FLFGSALSEMNQKKLESWMVNNQVTG---NLLRSVLPAGWNIADKSGAGGFGARSITAVV 227
Query: 165 YHKVDVEIGMKIFLTPERRSLFERS 189
+ + I + I+L + S+ ER+
Sbjct: 228 WSEHQAPIIVSIYLAQTQASMEERN 252
>pdb|1G68|A Chain A, Pse-4 Carbenicillinase, Wild Type
Length = 271
Score = 24.6 bits (52), Expect = 8.0
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 111 FFFGLQLAA------NTWILNNKVKDLVVNTWDSLKDFNFHNTYFRAIGKFGVQFRTIVL 164
F FG L+ +W++NN+V N S+ ++ G FG + T V+
Sbjct: 171 FLFGSALSEMNQKKLESWMVNNQVTG---NLLRSVLPAGWNIADRSGAGGFGARSITAVV 227
Query: 165 YHKVDVEIGMKIFLTPERRSLFERS 189
+ + I + I+L + S+ ER+
Sbjct: 228 WSEHQAPIIVSIYLAQTQASMEERN 252
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.328 0.141 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,165,291
Number of Sequences: 13198
Number of extensions: 48070
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 4
length of query: 200
length of database: 2,899,336
effective HSP length: 84
effective length of query: 116
effective length of database: 1,790,704
effective search space: 207721664
effective search space used: 207721664
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)