BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645681|ref|NP_207858.1| chemotaxis protein (cheY)
[Helicobacter pylori 26695]
(124 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2CHE| Chey Complexed With Mg2+ >gi|515286|pdb|2CHF| ... 122 1e-29
pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C) 121 2e-29
pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyper... 120 3e-29
pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted,... 120 5e-29
pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures) 120 5e-29
pdb|3CHY| CheY >gi|13096520|pdb|1FFG|A Chain A, Chey-Bind... 120 5e-29
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotax... 120 5e-29
pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t >gi... 120 6e-29
pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t >gi... 120 6e-29
pdb|5CHY| Structure Of Chemotaxis Protein Chey 118 2e-28
pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile... 118 2e-28
pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Me... 117 3e-28
pdb|1EHC| Structure Of Signal Transduction Protein Chey 117 3e-28
pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Mo... 117 3e-28
pdb|1E6M|A Chain A, Two-Component Signal Transduction Syste... 117 4e-28
pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant... 117 4e-28
pdb|1E6K|A Chain A, Two-Component Signal Transduction Syste... 117 4e-28
pdb|1E6L|A Chain A, Two-Component Signal Transduction Syste... 117 4e-28
pdb|1YMV| Signal Transduction Protein Chey Mutant With Ph... 116 7e-28
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey >g... 116 9e-28
pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp... 114 4e-27
pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13... 105 2e-24
pdb|1TMY| Chey From Thermotoga Maritima (Apo-I) >gi|27811... 79 2e-16
pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia C... 71 4e-14
pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver ... 67 5e-13
pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RE... 57 8e-10
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Co... 56 1e-09
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain >gi... 54 7e-09
pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylat... 51 3e-08
pdb|1NTR| Solution Structure Of The N-Terminal Receiver D... 51 3e-08
pdb|1A2O|A Chain A, Structural Basis For Methylesterase Che... 49 1e-07
pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylat... 49 2e-07
pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound R... 48 4e-07
pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound F... 48 4e-07
pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domai... 48 4e-07
pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial P... 47 5e-07
pdb|1F51|F Chain F, A Transient Interaction Between Two Pho... 46 1e-06
pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resi... 46 1e-06
pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo... 44 5e-06
pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Resp... 41 5e-05
pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal... 38 3e-04
pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprP... 33 0.007
pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp ... 30 0.062
pdb|1KHE|A Chain A, Pepck Complex With Nonhydrolyzable Gtp ... 30 0.062
pdb|3PJR|A Chain A, Helicase Substrate Complex >gi|2781090|... 27 0.52
pdb|1QHH|C Chain C, Structure Of Dna Helicase With Adpnp 27 0.52
pdb|2PJR|F Chain F, Helicase Product Complex >gi|9257172|pd... 27 0.52
pdb|3UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutam... 26 1.2
pdb|1EEH|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutam... 26 1.2
pdb|1KS9|A Chain A, Ketopantoate Reductase From Escherichia... 24 5.8
pdb|1JJY|A Chain A, Crystal Structure Of A Ni-Containing Ca... 23 7.5
pdb|1BAY|B Chain B, Glutathione S-Transferase Yfyf Cys 47-C... 23 7.5
pdb|1GTI|A Chain A, Modified Glutathione S-Transferase (Pi)... 23 7.5
pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-Ran ... 23 7.5
pdb|1GLQ|A Chain A, Glutathione S-Transferase Yfyf (Class P... 23 7.5
>pdb|2CHE| Chey Complexed With Mg2+
pdb|2CHF| Chey
Length = 128
Score = 122 bits (306), Expect = 1e-29
Identities = 59/119 (49%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A +I+DWNMP M+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-FGFIISDWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+DS +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 64 GLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>pdb|2CHY| CheY (Mutant With Ser 56 Replaced By Cys) (S56C)
Length = 128
Score = 121 bits (304), Expect = 2e-29
Identities = 59/119 (49%), Positives = 81/119 (67%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A +I DWNMP M+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-FGFIICDWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+DS +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 64 GLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 120 bits (302), Expect = 3e-29
Identities = 60/119 (50%), Positives = 81/119 (67%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K VI A +AG + Y+VKPFT L+EKL +
Sbjct: 64 GLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>pdb|1CYE| Chey Mutant With Met 1 Deleted, Arg 1 Inserted, And Ala 2 Replaced
By Ser (Del(M1),Ins(R1),A2s) (Nmr, 20 Structures)
Length = 129
Score = 120 bits (301), Expect = 5e-29
Identities = 59/119 (49%), Positives = 81/119 (67%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 64
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 65 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
>pdb|1CEY| Chey Complexed With Magnesium (Nmr, 46 Structures)
Length = 128
Score = 120 bits (301), Expect = 5e-29
Identities = 59/119 (49%), Positives = 81/119 (67%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 64 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>pdb|3CHY| CheY
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1CHN| Chey Complexed With Mg2+ In The Active Site
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
Length = 128
Score = 120 bits (301), Expect = 5e-29
Identities = 59/119 (49%), Positives = 81/119 (67%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 64 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
Length = 129
Score = 120 bits (301), Expect = 5e-29
Identities = 59/119 (49%), Positives = 81/119 (67%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 64
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 65 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 120 bits (300), Expect = 6e-29
Identities = 59/119 (49%), Positives = 81/119 (67%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD+STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 60
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 61 GLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 120 bits (300), Expect = 6e-29
Identities = 59/119 (49%), Positives = 81/119 (67%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD+STMRRI +N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 60
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 61 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 119
>pdb|5CHY| Structure Of Chemotaxis Protein Chey
Length = 128
Score = 118 bits (296), Expect = 2e-28
Identities = 58/119 (48%), Positives = 81/119 (67%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + ++VKPFT L+EKL +
Sbjct: 64 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
>pdb|1VLZ|A Chain A, Chey Mutant With Thr 87 Replaced By Ile (T87i)
pdb|1VLZ|B Chain B, Chey Mutant With Thr 87 Replaced By Ile (T87i)
Length = 128
Score = 118 bits (295), Expect = 2e-28
Identities = 58/119 (48%), Positives = 80/119 (66%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+ E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 64 GLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 117 bits (294), Expect = 3e-28
Identities = 58/119 (48%), Positives = 80/119 (66%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+ +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 64 GLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>pdb|1EHC| Structure Of Signal Transduction Protein Chey
Length = 128
Score = 117 bits (294), Expect = 3e-28
Identities = 58/119 (48%), Positives = 80/119 (66%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVD STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 5 LKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 64 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 117 bits (294), Expect = 3e-28
Identities = 58/119 (48%), Positives = 80/119 (66%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A V I+ WNMP M+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISXWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 64 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 117 bits (293), Expect = 4e-28
Identities = 58/119 (48%), Positives = 80/119 (66%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A V I+ WNMP M+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISAWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 64 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 117 bits (293), Expect = 4e-28
Identities = 58/119 (48%), Positives = 80/119 (66%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD ST RRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 7 LKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 65
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 66 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 117 bits (293), Expect = 4e-28
Identities = 58/119 (48%), Positives = 80/119 (66%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVV D STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 7 LKFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 65
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 66 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 124
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 117 bits (293), Expect = 4e-28
Identities = 58/119 (48%), Positives = 80/119 (66%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVD STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 4 LKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 62
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 63 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 121
>pdb|1YMV| Signal Transduction Protein Chey Mutant With Phe 14 Replaced By
Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By Gly
Length = 129
Score = 116 bits (291), Expect = 7e-28
Identities = 57/119 (47%), Positives = 79/119 (65%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD T RRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 64
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 65 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123
>pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 116 bits (290), Expect = 9e-28
Identities = 57/119 (47%), Positives = 80/119 (66%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+ E K +I A +AG + ++VKPFT L+EKL +
Sbjct: 64 GLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKPFTAATLEEKLNKI 122
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 114 bits (284), Expect = 4e-27
Identities = 56/119 (47%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVVDD STMRRI++N L LG+ +V EAE GV+A KL A V I+DWNMP M+
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 64
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E + +AG + Y+VKPFT L+EKL +
Sbjct: 65 GLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKPFTAATLEEKLNKI 123
>pdb|1HEY| Chey Mutant With Asp 12 Replaced By Gly, Asp 13 Replaced By Asn,
Phe 14 Replaced By Gly, Ser 15 Replaced By Gly, Met 17
Replaced By Gly, Arg 18 Replaced By Lys, Arg 19 Replaced
By Ser, Ile 20 Replaced By Thr, Glu 35 Replaced By Asp
(D12g, D13n,F14g,S15g,M17g,R18k,R19s,I20t,E35d)
(Synchrotron X-Ray Diffraction)
Length = 128
Score = 105 bits (262), Expect = 2e-24
Identities = 51/119 (42%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+K LVV + T + ++N L LG+ +V +AE GV+A KL A V I+DWNMP M+
Sbjct: 5 LKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQAGGYGFV-ISDWNMPNMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
GL+L+K +R+D +P++M+T E K +I A +AG + Y+VKPFT L+EKL +
Sbjct: 64 GLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 122
>pdb|1TMY| Chey From Thermotoga Maritima (Apo-I)
pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|2TMY| Chey From Thermotoga Maritima (Apo-Ii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (Mg-Iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (Mg-Iv)
Length = 120
Score = 78.6 bits (192), Expect = 2e-16
Identities = 47/119 (39%), Positives = 73/119 (60%), Gaps = 5/119 (4%)
Query: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61
++L+VDD++ MR ++K+ +++ GYE EA +G EA EK ++ D MPEMNG
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKY-KELKPDIVTMDITMPEMNG 62
Query: 62 LDLVKKV-RSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVV 119
+D +K++ + D K II+ + G +A VI A+KAG ++IVKPF P + E L V
Sbjct: 63 IDAIKEIMKIDPNAK---IIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
Length = 127
Score = 70.9 bits (172), Expect = 4e-14
Identities = 35/119 (29%), Positives = 73/119 (60%), Gaps = 2/119 (1%)
Query: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61
++LVV+D + +R ++ L + G++ V EAE A +L+ +L+ DW +P +G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPV-EAEDYDSAVNQLNEPWPDLILL-DWMLPGGSG 61
Query: 62 LDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
+ +K ++ +S ++IP++M+T G + + + L+ G ++YI KPF+P+ L +++ V+
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 67.4 bits (163), Expect = 5e-13
Identities = 34/119 (28%), Positives = 72/119 (59%), Gaps = 4/119 (3%)
Query: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61
K+LVVDD ++ +++ L R GY DV+ A G EA +K + +++ D +P+++G
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGY-DVITASDGEEALKKAETEKPD-LIVLDVMLPKLDG 62
Query: 62 LDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
+++ K++R PI+M+T + + + + L+ G ++Y+ KPF+P+ + +++ +L
Sbjct: 63 IEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 119
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL| The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM Narl
Length = 215
Score = 56.6 bits (135), Expect = 8e-10
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 3 LLVVDDSSTMRRIIKNTLSRLGYEDVL----EAEHGVEAWEKLDANADTKVLITDWNMPE 58
+L++DD +R +K +S V+ E G+E E LD + +++ D NMP
Sbjct: 8 ILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPD----LILLDLNMPG 63
Query: 59 MNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKL 116
MNGL+ + K+R S I + ++ + +V+TALK G + Y++K P+ L + L
Sbjct: 64 MNGLETLDKLREKSLSGRIVVFSVSNH--EEDVVTALKRGADGYLLKDMEPEDLLKAL 119
>pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 56.2 bits (134), Expect = 1e-09
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 5 VVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDL 64
+VDD +R+ + L+ G+ ++ EA+ + VL+TD MP+M+G++L
Sbjct: 8 IVDDEEPVRKSLAFMLTMNGF--AVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVEL 65
Query: 65 VKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLE 117
++ + D + IP I+IT G + A+KAG ++I KPF V+ E +E
Sbjct: 66 LRNL-GDLKIN-IPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIE 116
>pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 53.5 bits (127), Expect = 7e-09
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 5 VVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDL 64
+VDD +R+ + L+ G+ ++ EA+ + VL+T MP+M+G++L
Sbjct: 8 IVDDEEPVRKSLAFMLTMNGF--AVKMHQSAEAFLAFAPDVRNGVLVTXLRMPDMSGVEL 65
Query: 65 VKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLE 117
++ + D + IP I+IT G + A+KAG ++I KPF V+ E +E
Sbjct: 66 LRNL-GDLKIN-IPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIE 116
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 51.2 bits (121), Expect = 3e-08
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 5 VVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDL 64
VVDD S++R +++ L+ G E+G E L A+ VL++D MP M+GL L
Sbjct: 8 VVDDDSSIRWVLERALAGAGLT-CTTFENGNEVLAAL-ASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 VKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPF 107
+K+++ R +P+I++T ++A + G +Y+ KPF
Sbjct: 66 LKQIK--QRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF 106
>pdb|1NTR| Solution Structure Of The N-Terminal Receiver Domain Of Ntrc
Length = 124
Score = 51.2 bits (121), Expect = 3e-08
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 5 VVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDL 64
VVDD S++R +++ L+ G E+G E L A+ VL++D MP M+GL L
Sbjct: 8 VVDDDSSIRWVLERALAGAGLT-CTTFENGNEVLAAL-ASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 VKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPF 107
+K+++ R +P+I++T ++A + G +Y+ KPF
Sbjct: 66 LKQIK--QRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF 106
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 49.3 bits (116), Expect = 1e-07
Identities = 30/108 (27%), Positives = 58/108 (52%), Gaps = 5/108 (4%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+++L VDDS+ MR+I+ ++ +++ L + VL D MP M+
Sbjct: 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMD 63
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVIT--ALKAGVNNYIVKP 106
GLD ++K+ R + +P++M+++ GK +T AL+ G +++ KP
Sbjct: 64 GLDFLEKL---MRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKP 108
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 48.5 bits (114), Expect = 2e-07
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 5 VVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDL 64
VVDD S++R +++ L+ G E+G E L A+ VL++ MP M+GL L
Sbjct: 8 VVDDDSSIRWVLERALAGAGLT-CTTFENGNEVLAAL-ASKTPDVLLSXIRMPGMDGLAL 65
Query: 65 VKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPF 107
+K+++ R +P+I++T ++A + G +Y+ KPF
Sbjct: 66 LKQIKQ--RHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPF 106
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 47.8 bits (112), Expect = 4e-07
Identities = 30/105 (28%), Positives = 56/105 (52%), Gaps = 4/105 (3%)
Query: 3 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGL 62
+ ++DD +R+ ++ TL G+ V EA L A+ ++I+D MP M+GL
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFT-VSSFASATEALAGLSADF-AGIVISDIRMPGMDGL 63
Query: 63 DLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPF 107
L +K+ + ++P+I++T G + A++ G ++I KPF
Sbjct: 64 ALFRKILALD--PDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPF 106
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 47.8 bits (112), Expect = 4e-07
Identities = 30/126 (23%), Positives = 69/126 (53%), Gaps = 10/126 (7%)
Query: 3 LLVVDDSSTMRRIIKNTL--SRLGYE-----DVLEAEHGVEAWEKLDANADTKVLITDWN 55
+L+V+DS R+++ L S + +E D L A ++ + + + +++ D N
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN 70
Query: 56 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEK 115
+P+ +G +++ +++ + K IP++++TT + +VI + + VN Y+ K + LK+
Sbjct: 71 LPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTK---SRNLKDL 127
Query: 116 LEVVLG 121
++V G
Sbjct: 128 FKMVQG 133
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 47.8 bits (112), Expect = 4e-07
Identities = 30/105 (28%), Positives = 56/105 (52%), Gaps = 4/105 (3%)
Query: 3 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGL 62
+ ++DD +R+ ++ TL G+ V EA L A+ ++I+D MP M+GL
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFT-VSSFASATEALAGLSADF-AGIVISDIRMPGMDGL 63
Query: 63 DLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPF 107
L +K+ + ++P+I++T G + A++ G ++I KPF
Sbjct: 64 ALFRKILALD--PDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPF 106
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 47.4 bits (111), Expect = 5e-07
Identities = 26/110 (23%), Positives = 61/110 (54%), Gaps = 7/110 (6%)
Query: 3 LLVVDDSSTMRRIIKNTL--SRLGYE-----DVLEAEHGVEAWEKLDANADTKVLITDWN 55
+L+V+DS R+++ L S + +E D L A ++ + + + +++ D N
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAXAFLQQQGEYENSPRPNLILLDLN 70
Query: 56 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVK 105
+P+ +G +++ +++ + K IP++++TT + +VI + + VN Y+ K
Sbjct: 71 LPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTK 120
>pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 46.2 bits (108), Expect = 1e-06
Identities = 28/119 (23%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61
K+L+VDD S +R ++ ++ GY+ +A +G++A + + VL+ D +P M+G
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQ-TFQAANGLQALDIVTKERPDLVLL-DMKIPGMDG 60
Query: 62 LDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
++++K+++ + I +I++T G + + + G + KPF +++ ++ L
Sbjct: 61 IEILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 117
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
Length = 124
Score = 46.2 bits (108), Expect = 1e-06
Identities = 28/119 (23%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61
K+L+VDD S +R ++ ++ GY+ +A +G++A + + VL+ D +P M+G
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQ-TFQAANGLQALDIVTKERPDLVLL-DMKIPGMDG 62
Query: 62 LDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
++++K+++ + I +I++T G + + + G + KPF +++ ++ L
Sbjct: 63 IEILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>pdb|1FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein, 20
Structures
pdb|2FSP| Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
pdb|1NAT| Crystal Structure Of Spoof From Bacillus Subtilis
Length = 124
Score = 43.9 bits (102), Expect = 5e-06
Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61
K+L+VDD +R ++ ++ GY+ +A +G++A + + VL+ D +P M+G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQ-TFQAANGLQALDIVTKERPDLVLL-DMKIPGMDG 62
Query: 62 LDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
++++K+++ + I +I++T G + + + G + KPF +++ ++ L
Sbjct: 63 IEILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 40.8 bits (94), Expect = 5e-05
Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVL-EAEHGVEAWEKLDANADTKVLITDWNMPEM 59
+K+ + DD+ + ++ +S +V+ A +G + + L+ +L+ D MP +
Sbjct: 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPD-ILLLDIIMPHL 61
Query: 60 NGLDLVKKVRSDSRFKEIP-IIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEV 118
+GL +++++R+ F+ P +IM+T G + A++ G + +I+KPF + L +
Sbjct: 62 DGLAVLERIRAG--FEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQ 119
Query: 119 VLG 121
V G
Sbjct: 120 VYG 122
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 38.1 bits (87), Expect = 3e-04
Identities = 29/123 (23%), Positives = 64/123 (51%), Gaps = 5/123 (4%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVL-EAEHGVEAWEKLDANADTKVLITDWNMPEM 59
+K+ + DD+ + ++ +S +V+ A +G + + L+ +L+ MP +
Sbjct: 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPD-ILLLXIIMPHL 61
Query: 60 NGLDLVKKVRSDSRFKEIP-IIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEV 118
+GL +++++R+ F+ P +IM+T G + A++ G + +I+KPF + L +
Sbjct: 62 DGLAVLERIRAG--FEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQ 119
Query: 119 VLG 121
V G
Sbjct: 120 VYG 122
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
Thermotoga Maritima
Length = 225
Score = 33.5 bits (75), Expect = 0.007
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMN 60
+++LVV+D + +I L + + ++ + E N V+I D +P +
Sbjct: 3 VRVLVVEDERDLADLITEALKKEXF--TVDVCYDGEEGXYXALNEPFDVVILDIXLPVHD 60
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
G +++K R P++ +T + L G ++Y+ KPF + L ++ ++
Sbjct: 61 GWEILKSXRESG--VNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALI 118
>pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Native Data
pdb|1KHF|A Chain A, Pepck Complex With Pep
pdb|1KHG|A Chain A, Pepck
Length = 625
Score = 30.4 bits (67), Expect = 0.062
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Query: 5 VVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDL 64
V + + ++ I KNT+ + +V E G WE +D + V IT W E + D
Sbjct: 344 VKTNPNAIKTIQKNTI----FTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDG 399
Query: 65 VKKVRSDSRF----KEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
+SRF + PII E + I + G P + L + V +
Sbjct: 400 EPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFV 459
Query: 121 G 121
G
Sbjct: 460 G 460
>pdb|1KHE|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Mad Data
Length = 625
Score = 30.4 bits (67), Expect = 0.062
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Query: 5 VVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDL 64
V + + ++ I KNT+ + +V E G WE +D + V IT W E + D
Sbjct: 344 VKTNPNAIKTIQKNTI----FTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDG 399
Query: 65 VKKVRSDSRF----KEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
+SRF + PII E + I + G P + L + V +
Sbjct: 400 EPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFV 459
Query: 121 G 121
G
Sbjct: 460 G 460
>pdb|3PJR|A Chain A, Helicase Substrate Complex
pdb|1PJR| Structure Of Dna Helicase
pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
Length = 724
Score = 27.3 bits (59), Expect = 0.52
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 11 TMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLIT 52
++ +++ L + GY ++L+AE +EA +L+ N D + +T
Sbjct: 479 SVTELVEEVLDKSGYREMLKAERTIEAQSRLE-NLDEFLSVT 519
>pdb|1QHH|C Chain C, Structure Of Dna Helicase With Adpnp
Length = 115
Score = 27.3 bits (59), Expect = 0.52
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 11 TMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLIT 52
++ +++ L + GY ++L+AE +EA +L+ N D + +T
Sbjct: 39 SVTELVEEVLDKSGYREMLKAERTIEAQSRLE-NLDEFLSVT 79
>pdb|2PJR|F Chain F, Helicase Product Complex
pdb|2PJR|A Chain A, Helicase Product Complex
Length = 548
Score = 27.3 bits (59), Expect = 0.52
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 11 TMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLIT 52
++ +++ L + GY ++L+AE +EA +L+ N D + +T
Sbjct: 479 SVTELVEEVLDKSGYREMLKAERTIEAQSRLE-NLDEFLSVT 519
>pdb|3UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|4UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|1UAG| Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
Length = 437
Score = 26.2 bits (56), Expect = 1.2
Identities = 16/45 (35%), Positives = 23/45 (50%), Gaps = 5/45 (11%)
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVIT-----ALKAGVN 100
G+++V + R + PI+ IT GK+ V T A AGVN
Sbjct: 88 GIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVN 132
>pdb|1EEH|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
Length = 437
Score = 26.2 bits (56), Expect = 1.2
Identities = 16/45 (35%), Positives = 23/45 (50%), Gaps = 5/45 (11%)
Query: 61 GLDLVKKVRSDSRFKEIPIIMITTEGGKAEVIT-----ALKAGVN 100
G+++V + R + PI+ IT GK+ V T A AGVN
Sbjct: 88 GIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVN 132
>pdb|1KS9|A Chain A, Ketopantoate Reductase From Escherichia Coli
Length = 291
Score = 23.9 bits (50), Expect = 5.8
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 8 DSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMP 57
D S + I++ L + + + + AE W KL N L WN P
Sbjct: 148 DYSYLADILQTVLPDVAWHNNIRAE----LWRKLAVNCVINPLTAIWNCP 193
>pdb|1JJY|A Chain A, Crystal Structure Of A Ni-Containing Carbon Monoxide
Dehydrogenase From Carboxydothermus Hydrogenoformans
Length = 636
Score = 23.5 bits (49), Expect = 7.5
Identities = 18/80 (22%), Positives = 40/80 (49%), Gaps = 5/80 (6%)
Query: 31 AEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITT--EGGK 88
A + ++ KL + A + T+ E L++ K +D K+ P++ +TT +
Sbjct: 113 ASYMIKDRTKLHSIAKRLGIPTEGQKDEDIALEVAKAALADFHEKDTPVLWVTTVLPPSR 172
Query: 89 AEVITA---LKAGVNNYIVK 105
+V++A + AG+++ I +
Sbjct: 173 VKVLSAHGLIPAGIDHEIAE 192
>pdb|1BAY|B Chain B, Glutathione S-Transferase Yfyf Cys 47-Carboxymethylated
Class Pi, Free Enzyme
pdb|1BAY|A Chain A, Glutathione S-Transferase Yfyf Cys 47-Carboxymethylated
Class Pi, Free Enzyme
Length = 208
Score = 23.5 bits (49), Expect = 7.5
Identities = 13/41 (31%), Positives = 19/41 (45%)
Query: 55 NMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITAL 95
N E +D+V D R K + +I E GK + + AL
Sbjct: 81 NQREAAQMDMVNDGVEDLRGKYVTLIYTNYENGKNDYVKAL 121
>pdb|1GTI|A Chain A, Modified Glutathione S-Transferase (Pi) Complexed With S
(P-Nitrobenzyl)glutathione
pdb|1GTI|B Chain B, Modified Glutathione S-Transferase (Pi) Complexed With S
(P-Nitrobenzyl)glutathione
pdb|1GTI|C Chain C, Modified Glutathione S-Transferase (Pi) Complexed With S
(P-Nitrobenzyl)glutathione
pdb|1GTI|D Chain D, Modified Glutathione S-Transferase (Pi) Complexed With S
(P-Nitrobenzyl)glutathione
pdb|1GTI|E Chain E, Modified Glutathione S-Transferase (Pi) Complexed With S
(P-Nitrobenzyl)glutathione
pdb|1GTI|F Chain F, Modified Glutathione S-Transferase (Pi) Complexed With S
(P-Nitrobenzyl)glutathione
Length = 209
Score = 23.5 bits (49), Expect = 7.5
Identities = 13/41 (31%), Positives = 19/41 (45%)
Query: 55 NMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITAL 95
N E +D+V D R K + +I E GK + + AL
Sbjct: 82 NQREAAQMDMVNDGVEDLRGKYVTLIYTNYENGKNDYVKAL 122
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-Ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 23.5 bits (49), Expect = 7.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 32 EHGVEAWEKLDANADTKVLITDWNMPEMN--GLDLVKKVRSDSRFKEI 77
E G+E + D D I+DWN+ + + LD++ V D I
Sbjct: 351 EDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHI 398
>pdb|1GLQ|A Chain A, Glutathione S-Transferase Yfyf (Class Pi) (E.C.2.5.1.18)
Complexed With S-(P-Nitrobenzyl) Glutathione
pdb|1GLQ|B Chain B, Glutathione S-Transferase Yfyf (Class Pi) (E.C.2.5.1.18)
Complexed With S-(P-Nitrobenzyl) Glutathione
pdb|1GLP|A Chain A, Glutathione S-Transferase Yfyf (Class Pi) (E.C.2.5.1.18)
Complexed With Glutathione Sulfonic Acid
pdb|1GLP|B Chain B, Glutathione S-Transferase Yfyf (Class Pi) (E.C.2.5.1.18)
Complexed With Glutathione Sulfonic Acid
pdb|2GLR|A Chain A, Glutathione S-Transferase Yfyf (Class Pi) (E.C.2.5.1.18)
Complexed With S-Hexyl Glutathione
pdb|2GLR|B Chain B, Glutathione S-Transferase Yfyf (Class Pi) (E.C.2.5.1.18)
Complexed With S-Hexyl Glutathione
pdb|1GSY|A Chain A, Glutathione S-Transferase Yfyf, Class Pi, Complexed With
Glutathione
pdb|1GSY|B Chain B, Glutathione S-Transferase Yfyf, Class Pi, Complexed With
Glutathione
Length = 209
Score = 23.5 bits (49), Expect = 7.5
Identities = 13/41 (31%), Positives = 19/41 (45%)
Query: 55 NMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITAL 95
N E +D+V D R K + +I E GK + + AL
Sbjct: 82 NQREAAQMDMVNDGVEDLRGKYVTLIYTNYENGKNDYVKAL 122
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 708,641
Number of Sequences: 13198
Number of extensions: 27033
Number of successful extensions: 142
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 55
length of query: 124
length of database: 2,899,336
effective HSP length: 77
effective length of query: 47
effective length of database: 1,883,090
effective search space: 88505230
effective search space used: 88505230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)