BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645682|ref|NP_207859.1| ribosomal protein L11
methyltransferase (prmA) [Helicobacter pylori 26695]
(333 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core... 36 0.007
pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Met... 35 0.012
pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. J... 32 0.077
pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copp... 28 1.5
pdb|1LLD|A Chain A, L-Lactate Dehydrogenase (E.C.1.1.1.27) ... 28 1.5
pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltr... 28 1.9
pdb|1XVA|A Chain A, Methyltransferase >gi|1942408|pdb|1XVA|... 27 4.2
pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glyci... 27 4.2
pdb|1DTI|A Chain A, Recombinant Sperm Whale Myoglobin H97d,... 25 9.4
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 35.8 bits (81), Expect = 0.007
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 194 KRKNALDVGCGSGILSIALKKQGVSALVACDTDSLAVE--ETLKNFSLNQIPLLVQDKV 250
K K LDVGCG+GILS+ K G ++A D + + + ++ L +L++ K+
Sbjct: 45 KDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQAMDIIRLNKLEDTIVLIKGKI 103
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 35.0 bits (79), Expect = 0.012
Identities = 16/35 (45%), Positives = 21/35 (59%)
Query: 194 KRKNALDVGCGSGILSIALKKQGVSALVACDTDSL 228
K K LDVGCG+GILS+ K G ++ D S+
Sbjct: 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI 72
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 32.3 bits (72), Expect = 0.077
Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Query: 194 KRKNALDVGCGSGILSIALKKQGVSALVACDTDSLAVEETLKNFSLNQI 242
K + LD+GCG G++ IAL + V + D + A++ +N LN +
Sbjct: 52 KDDDILDLGCGYGVIGIALADE-VKSTTXADINRRAIKLAKENIKLNNL 99
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
Length = 488
Score = 28.1 bits (61), Expect = 1.5
Identities = 14/52 (26%), Positives = 30/52 (56%), Gaps = 1/52 (1%)
Query: 216 GVSALVACDTDSLAVEETLKNFSLNQIPLLVQDKVIYGSTQKIEGRFDVIVA 267
G++ LV + D + K + ++ +P++VQDK + + +I+ + DV+ A
Sbjct: 127 GLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKK-FSADGQIDYQLDVMTA 177
>pdb|1LLD|A Chain A, L-Lactate Dehydrogenase (E.C.1.1.1.27) (T-State) Mutant
With Cys 199 Replaced By Ser (C199s) Complex With Nadh
pdb|1LLD|B Chain B, L-Lactate Dehydrogenase (E.C.1.1.1.27) (T-State) Mutant
With Cys 199 Replaced By Ser (C199s) Complex With Nadh
pdb|1LTH|R Chain R, Regular Mixture Of 1:1 Complex Of T- And R- State
Tetramers Of L-Lactate Dehydrogenase (E.C.1.1.1.27)
Mutant With Cys 199 Replaced By Ser (C199s)
pdb|1LTH|T Chain T, Regular Mixture Of 1:1 Complex Of T- And R- State
Tetramers Of L-Lactate Dehydrogenase (E.C.1.1.1.27)
Mutant With Cys 199 Replaced By Ser (C199s)
Length = 319
Score = 28.1 bits (61), Expect = 1.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 45 DKETIGFISQSNWHYFATHDPLKKDLKENLKEK 77
+ TIG + S+W HDPL D +E + ++
Sbjct: 189 ESATIGGVPMSDWTPLPGHDPLDADKREEIHQE 221
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 27.7 bits (60), Expect = 1.9
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 185 LELLSDIDLKRKNALDVGCGSGILSIALKKQGVSALVACDTDSLAVEETLKNFSLNQIPL 244
LELL D + ALDVG GSGIL+ + +V C T K ++ I
Sbjct: 68 LELLFDQLHEGAKALDVGSGSGILTACFAR-----MVGC---------TGKVIGIDHIKE 113
Query: 245 LVQDKV 250
LV D V
Sbjct: 114 LVDDSV 119
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
Length = 292
Score = 26.6 bits (57), Expect = 4.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 199 LDVGCGSGILSIALKKQGVSALVACDTDSL 228
LDV CG+G+ SI L ++G S +D +
Sbjct: 61 LDVACGTGVDSIMLVEEGFSVTSVDASDKM 90
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
Length = 292
Score = 26.6 bits (57), Expect = 4.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 199 LDVGCGSGILSIALKKQGVSALVACDTDSL 228
LDV CG+G+ SI L ++G S +D +
Sbjct: 61 LDVACGTGVDSIMLVEEGFSVTSVDASDKM 90
>pdb|1DTI|A Chain A, Recombinant Sperm Whale Myoglobin H97d, D122n Mutant (Met)
Length = 154
Score = 25.4 bits (54), Expect = 9.4
Identities = 19/67 (28%), Positives = 33/67 (48%), Gaps = 5/67 (7%)
Query: 80 HLKNFVILRSQKDLNNSLIPALEAFCLNLKQNLQSEFDFFYLSRNLASKD-----WLEAY 134
HLK +++ +DL + L A LK+ E + L+++ A+KD +LE
Sbjct: 49 HLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKDKIPIKYLEFI 108
Query: 135 KQAILPV 141
+AI+ V
Sbjct: 109 SEAIIHV 115
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,867,356
Number of Sequences: 13198
Number of extensions: 71842
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 9
length of query: 333
length of database: 2,899,336
effective HSP length: 89
effective length of query: 244
effective length of database: 1,724,714
effective search space: 420830216
effective search space used: 420830216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)