BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645683|ref|NP_207860.1| cell division protein
(ftsH) [Helicobacter pylori 26695]
(632 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 317 3e-87
pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Do... 315 7e-87
pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of ... 310 2e-85
pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And ... 189 6e-49
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptida... 48 4e-06
pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Loc... 48 4e-06
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Cha... 48 4e-06
pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfon... 45 3e-05
pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomet... 44 7e-05
pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive... 42 2e-04
pdb|1NSF| D2 Hexamerization Domain Of N-Ethylmaleimide Se... 42 2e-04
pdb|1IXR|C Chain C, Ruva-Ruvb Complex 36 0.011
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 36 0.011
pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva D... 36 0.011
pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermoph... 36 0.011
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 36 0.011
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 36 0.011
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 36 0.011
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 36 0.011
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 35 0.025
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 34 0.056
pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader S... 34 0.056
pdb|1DKI|C Chain C, Crystal Structure Of The Zymogen Form O... 33 0.096
pdb|1JBK|A Chain A, Crystal Structure Of The First Nuceloti... 33 0.13
pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphorib... 32 0.28
pdb|1L1N|A Chain A, Poliovirus 3c Proteinase >gi|20664255|p... 29 1.8
pdb|1E29|A Chain A, Psii Associated Cytochrome C549 From Sy... 28 2.4
pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Co... 28 3.1
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 27 5.3
pdb|1J8M|F Chain F, Signal Recognition Particle Conserved G... 27 6.9
pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylo... 27 6.9
pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcal... 27 6.9
pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Al... 27 6.9
pdb|1PYP| Inorganic Pyrophosphatase (E.C.3.6.1.1) 27 6.9
pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrit... 27 6.9
pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Al... 27 9.0
pdb|1BA3| Firefly Luciferase In Complex With Bromoform >g... 27 9.0
pdb|1BQ5| Nitrite Reductase From Alcaligenes Xylosoxidans... 27 9.0
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 317 bits (812), Expect = 3e-87
Identities = 158/258 (61%), Positives = 199/258 (76%), Gaps = 2/258 (0%)
Query: 151 FGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVG 210
F ++ + E P V F D+AG EEAKEE+ EIV+FLK P R+ +GA+IPKGVLLVG
Sbjct: 21 FSFTKSRARVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVG 80
Query: 211 PPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDE 270
PPG GKT LA+AVAGEA VPF + GS F+EMFVG+GA+RVRDLFETAK+ AP I+FIDE
Sbjct: 81 PPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDE 140
Query: 271 IDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRP 330
IDA+G+ R + GV GNDEREQTLNQLL EMDGF + A ++V+AATNRP+ILDPAL+RP
Sbjct: 141 IDAVGRKRGS-GVGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATNRPDILDPALLRP 198
Query: 331 GRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAAL 390
GRFDRQ+ +D PD GR +IL++H +G LA DV+L +AK T G GADL N++NEAAL
Sbjct: 199 GRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAAL 258
Query: 391 LAGRNNQKEVRQQHLKEA 408
LA R ++++ + L+EA
Sbjct: 259 LAAREGRRKITMKDLEEA 276
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 315 bits (808), Expect = 7e-87
Identities = 157/246 (63%), Positives = 195/246 (78%), Gaps = 2/246 (0%)
Query: 163 EKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKA 222
E P V F D+AG EEAKEE+ EIV+FLK P R+ +GA+IPKGVLLVGPPG GKT LA+A
Sbjct: 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 68
Query: 223 VAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGG 282
VAGEA VPF + GS F+EMFVG+GA+RVRDLFETAK+ AP I+FIDEIDA+G+ R + G
Sbjct: 69 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS-G 127
Query: 283 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 342
V GNDEREQTLNQLL EMDGF + A ++V+AATNRP+ILDPAL+RPGRFDRQ+ +D P
Sbjct: 128 VGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAP 186
Query: 343 DFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQ 402
D GR +IL++H +G LA DV+L +AK T G GADL N++NEAALLA R ++++
Sbjct: 187 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 246
Query: 403 QHLKEA 408
+ L+EA
Sbjct: 247 KDLEEA 252
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 310 bits (795), Expect = 2e-85
Identities = 156/259 (60%), Positives = 202/259 (77%), Gaps = 2/259 (0%)
Query: 159 LINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTL 218
++ ++ F D+AG +EAKEEV E+V++L+ P R+ LG KIPKGVL+VGPPGTGKTL
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTL 60
Query: 219 LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 278
LAKA+AGEA VPFF++ GS F+EMFVG+GASRVRD+FE AKK AP IIFIDEIDA+G+ R
Sbjct: 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120
Query: 279 AAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVL 338
A G+ G+DEREQTLNQ+L EMDGF N +IV+AATNRP++LDPAL+RPGRFDRQV+
Sbjct: 121 GA-GLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV 178
Query: 339 VDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQK 398
V PD GR +ILKVH++ V LA D++ +A+ T G +GADLAN++NEAAL A R N++
Sbjct: 179 VGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKR 238
Query: 399 EVRQQHLKEAVERGIAGLE 417
V ++A ++ + GLE
Sbjct: 239 VVSMVEFEKAKDKIMMGLE 257
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
Length = 458
Score = 189 bits (481), Expect = 6e-49
Identities = 109/229 (47%), Positives = 149/229 (64%), Gaps = 6/229 (2%)
Query: 167 VRFNDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 225
V ++D+ G + ++ E+V+ L++P + +G K P+G+LL GPPGTGKTL+A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 226 EAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS 285
E FF + G + G S +R FE A+K AP+IIFIDE+DAI R
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---TH 317
Query: 286 GNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 345
G ER + ++QLL MDG + A VIV+AATNRP +DPAL R GRFDR+V + PD
Sbjct: 318 GEVER-RIVSQLLTLMDGL-KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 346 GRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 394
GR+EIL++H K +KLA+DV+L++VA T G GADLA + +EAAL A R
Sbjct: 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
>pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
Length = 443
Score = 47.8 bits (112), Expect = 4e-06
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 29/131 (22%)
Query: 150 IFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLV 209
I G +AK+ + N R+ M NEE + EV PK +L++
Sbjct: 17 IIGQDNAKRSVAIALRN-RWRRMQLNEELRHEVT-------------------PKNILMI 56
Query: 210 GPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGA-SRVRDLFETAKKQAPSIIF 267
GP G GKT +A+ +A A+ PF + + F E+ +VG S +RDL + A K
Sbjct: 57 GPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMV----- 111
Query: 268 IDEIDAIGKSR 278
+ AI K+R
Sbjct: 112 --RVQAIEKNR 120
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 47.8 bits (112), Expect = 4e-06
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 29/131 (22%)
Query: 150 IFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLV 209
I G +AK+ + N R+ M NEE + EV PK +L++
Sbjct: 16 IIGQDNAKRSVAIALRN-RWRRMQLNEELRHEVT-------------------PKNILMI 55
Query: 210 GPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGA-SRVRDLFETAKKQAPSIIF 267
GP G GKT +A+ +A A+ PF + + F E+ +VG S +RDL + A K
Sbjct: 56 GPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMV----- 110
Query: 268 IDEIDAIGKSR 278
+ AI K+R
Sbjct: 111 --RVQAIEKNR 119
>pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A Protease-
Associated Atpase Hslu
pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
Length = 449
Score = 47.8 bits (112), Expect = 4e-06
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 29/131 (22%)
Query: 150 IFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLV 209
I G +AK+ + N R+ M NEE + EV PK +L++
Sbjct: 23 IIGQDNAKRSVAIALRN-RWRRMQLNEELRHEVT-------------------PKNILMI 62
Query: 210 GPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGA-SRVRDLFETAKKQAPSIIF 267
GP G GKT +A+ +A A+ PF + + F E+ +VG S +RDL + A K
Sbjct: 63 GPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMV----- 117
Query: 268 IDEIDAIGKSR 278
+ AI K+R
Sbjct: 118 --RVQAIEKNR 126
>pdb|1KYI|A Chain A, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
Length = 444
Score = 44.7 bits (104), Expect = 3e-05
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 203 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGA-SRVRDLFETAKK 260
PK +L++GP G GKT +A+ +A A+ PF + + F E+ +VG S +RDL ++A K
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK 109
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 43.5 bits (101), Expect = 7e-05
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 203 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGA-SRVRDLFETAKK 260
PK +L +GP G GKT +A+ +A A+ PF + + F E+ +VG S +RDL ++A K
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAXK 109
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 42.0 bits (97), Expect = 2e-04
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 206 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM-GGSSFIEMFVGLGASRVRDLFETAKKQAPS 264
VLL GPP +GKT LA +A E++ PF + I ++ +F+ A K S
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 126
Query: 265 IIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 323
+ +D+I+ R V G L LL + + ++++ T+R ++L
Sbjct: 127 CVVVDDIE-----RLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 180
>pdb|1NSF| D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive Factor
(Nsf)
Length = 273
Score = 42.0 bits (97), Expect = 2e-04
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 206 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM-GGSSFIEMFVGLGASRVRDLFETAKKQAPS 264
VLL GPP +GKT LA +A E++ PF + I ++ +F+ A K S
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 125
Query: 265 IIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 323
+ +D+I+ R V G L LL + + ++++ T+R ++L
Sbjct: 126 CVVVDDIE-----RLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 179
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 36.2 bits (82), Expect = 0.011
Identities = 54/230 (23%), Positives = 84/230 (36%), Gaps = 30/230 (13%)
Query: 206 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSI 265
+LL GPPG GKT LA +A E V G + IE L A L E I
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPA-IEKPGDLAAILANSLEE------GDI 93
Query: 266 IFIDEIDAIGKSRA----------AGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLA 315
+FIDEI + + +V G +T+ L ++
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF----------TLIG 143
Query: 316 ATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAG 375
AT RP ++ L+ + P+ + + + GV++ + L E+ + + G
Sbjct: 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAAL-EIGRRSRG 202
Query: 376 L--AGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLEKKSRRI 423
L + + A +AG R A+ GLEK+ R I
Sbjct: 203 TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGLEKRDREI 252
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 36.2 bits (82), Expect = 0.011
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 8/82 (9%)
Query: 196 ANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLF 255
A + ++ VLL GPPG GKT LA +A E G ++ G A+ + L
Sbjct: 44 AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL- 100
Query: 256 ETAKKQAPSIIFIDEIDAIGKS 277
+ ++FIDEI + K+
Sbjct: 101 -----ERGDVLFIDEIHRLNKA 117
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 36.2 bits (82), Expect = 0.011
Identities = 54/230 (23%), Positives = 84/230 (36%), Gaps = 30/230 (13%)
Query: 206 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSI 265
+LL GPPG GKT LA +A E V G + IE L A L E I
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPA-IEKPGDLAAILANSLEE------GDI 93
Query: 266 IFIDEIDAIGKSRA----------AGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLA 315
+FIDEI + + +V G +T+ L ++
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF----------TLIG 143
Query: 316 ATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAG 375
AT RP ++ L+ + P+ + + + GV++ + L E+ + + G
Sbjct: 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAAL-EIGRRSRG 202
Query: 376 L--AGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLEKKSRRI 423
L + + A +AG R A+ GLEK+ R I
Sbjct: 203 TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGLEKRDREI 252
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 36.2 bits (82), Expect = 0.011
Identities = 54/230 (23%), Positives = 84/230 (36%), Gaps = 30/230 (13%)
Query: 206 VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSI 265
+LL GPPG GKT LA +A E V G + IE L A L E I
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPA-IEKPGDLAAILANSLEE------GDI 93
Query: 266 IFIDEIDAIGKSRA----------AGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLA 315
+FIDEI + + +V G +T+ L ++
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF----------TLIG 143
Query: 316 ATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAG 375
AT RP ++ L+ + P+ + + + GV++ + L E+ + + G
Sbjct: 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAAL-EIGRRSRG 202
Query: 376 L--AGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLEKKSRRI 423
L + + A +AG R A+ GLEK+ R I
Sbjct: 203 TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGLEKRDREI 252
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 36.2 bits (82), Expect = 0.011
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 8/82 (9%)
Query: 196 ANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLF 255
A + ++ VLL GPPG GKT LA +A E G ++ G A+ + L
Sbjct: 44 AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL- 100
Query: 256 ETAKKQAPSIIFIDEIDAIGKS 277
+ ++FIDEI + K+
Sbjct: 101 -----ERGDVLFIDEIHRLNKA 117
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 36.2 bits (82), Expect = 0.011
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 8/82 (9%)
Query: 196 ANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLF 255
A + ++ VLL GPPG GKT LA +A E G ++ G A+ + L
Sbjct: 44 AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL- 100
Query: 256 ETAKKQAPSIIFIDEIDAIGKS 277
+ ++FIDEI + K+
Sbjct: 101 -----ERGDVLFIDEIHRLNKA 117
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 36.2 bits (82), Expect = 0.011
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 8/82 (9%)
Query: 196 ANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLF 255
A + ++ VLL GPPG GKT LA +A E G ++ G A+ + L
Sbjct: 44 AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL- 100
Query: 256 ETAKKQAPSIIFIDEIDAIGKS 277
+ ++FIDEI + K+
Sbjct: 101 -----ERGDVLFIDEIHRLNKA 117
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 36.2 bits (82), Expect = 0.011
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 8/82 (9%)
Query: 196 ANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLF 255
A + ++ VLL GPPG GKT LA +A E G ++ G A+ + L
Sbjct: 44 AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL- 100
Query: 256 ETAKKQAPSIIFIDEIDAIGKS 277
+ ++FIDEI + K+
Sbjct: 101 -----ERGDVLFIDEIHRLNKA 117
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 35.0 bits (79), Expect = 0.025
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 196 ANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLF 255
A + ++ VLL GPPG G+T LA +A E G ++ G A+ + L
Sbjct: 44 AKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL- 100
Query: 256 ETAKKQAPSIIFIDEIDAIGKS 277
+ ++FIDEI + K+
Sbjct: 101 -----ERGDVLFIDEIHRLNKA 117
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 33.9 bits (76), Expect = 0.056
Identities = 29/91 (31%), Positives = 42/91 (45%), Gaps = 13/91 (14%)
Query: 207 LLVGPPGTGKTLLAKAVAGE----------AHVPFFSMGGSSFIE--MFVGLGASRVRDL 254
LLVG G GKT +A+ +A A +S+ S + + G R + L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 255 FETAKKQAPSIIFIDEIDA-IGKSRAAGGVV 284
+ ++ SI+FIDEI IG A+GG V
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQV 301
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.9 bits (76), Expect = 0.056
Identities = 35/115 (30%), Positives = 51/115 (43%), Gaps = 23/115 (20%)
Query: 168 RFNDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 227
R +D+ G E IV LK+ Y G+ +L GPPG GKT A A+A E
Sbjct: 23 RLDDIVGQEH-------IVKRLKH---YVKTGSM--PHLLFAGPPGVGKTTAALALAREL 70
Query: 228 HVPFFSMGGSSFIEMFVG--LGASRVRDLFETAKKQAP------SIIFIDEIDAI 274
F +F+E+ G + +R+ + + P IIF+DE DA+
Sbjct: 71 ---FGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL 122
>pdb|1DKI|C Chain C, Crystal Structure Of The Zymogen Form Of Streptococcal
Pyrogenic Exotoxin B Active Site (C47s) Mutant
pdb|1DKI|D Chain D, Crystal Structure Of The Zymogen Form Of Streptococcal
Pyrogenic Exotoxin B Active Site (C47s) Mutant
pdb|1DKI|B Chain B, Crystal Structure Of The Zymogen Form Of Streptococcal
Pyrogenic Exotoxin B Active Site (C47s) Mutant
pdb|1DKI|A Chain A, Crystal Structure Of The Zymogen Form Of Streptococcal
Pyrogenic Exotoxin B Active Site (C47s) Mutant
Length = 371
Score = 33.1 bits (74), Expect = 0.096
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 492 GGRAAEDVFLEEISTGASNDLERATDIIKGMVSYYGMSSVSGLMVLEKQRNAFLGGGYGS 551
G R+AED+ L++++ G + G Y S G +++ + + GY +
Sbjct: 28 GARSAEDIKLDKVNLGGE---------LSGSNMYVYNISTGGFVIVSGDKRSPEILGYST 78
Query: 552 SREFSEKTAEEMDLFIKNLLEERYKHVKQTLSDYREAIEI---MVKELFDKEVI 602
S F E + F+++ +E+ K K+ S Y EI +VK L D + I
Sbjct: 79 SGSFDVNGKENIASFMESYVEQ-IKENKKLDSTYAGTAEIKQPVVKSLLDSKGI 131
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 32.7 bits (73), Expect = 0.13
Identities = 28/95 (29%), Positives = 45/95 (46%), Gaps = 14/95 (14%)
Query: 207 LLVGPPGTGKTLLAKAVA-----GEA-------HVPFFSMGGSSFIEMFVGLGASRVRD- 253
+L+G PG GKT + + +A GE V MG + G R++
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 254 LFETAKKQAPSIIFIDEIDA-IGKSRAAGGVVSGN 287
L + AK++ I+FIDE+ +G +A G + +GN
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGN 141
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 31.6 bits (70), Expect = 0.28
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 253 DLFETAKKQAPS---IIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMD---GFGS 306
DLFE K P+ +I +D+I A G S AA G + E + E+D G
Sbjct: 110 DLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSK 169
Query: 307 ENAPVIVL 314
NAPV L
Sbjct: 170 LNAPVFTL 177
>pdb|1L1N|A Chain A, Poliovirus 3c Proteinase
pdb|1L1N|B Chain B, Poliovirus 3c Proteinase
Length = 183
Score = 28.9 bits (63), Expect = 1.8
Identities = 19/60 (31%), Positives = 30/60 (49%), Gaps = 4/60 (6%)
Query: 164 KPNVRFNDMAGNEEAK----EEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLL 219
K N +F D+ + + + V IV+ KYP Y +GA +G L +G T +TL+
Sbjct: 78 KRNEKFRDIRPHIPTQITETNDGVLIVNTSKYPNMYVPVGAVTEQGYLNLGGRQTARTLM 137
>pdb|1E29|A Chain A, Psii Associated Cytochrome C549 From Synechocystis Sp
Length = 135
Score = 28.5 bits (62), Expect = 2.4
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 171 DMAGNEEAKEEVVEIVDFLKYPERY 195
D+AG E ++ V+ +V+FLK P+ Y
Sbjct: 58 DLAGAEPRRDNVLALVEFLKNPKSY 82
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 28.1 bits (61), Expect = 3.1
Identities = 25/97 (25%), Positives = 43/97 (43%), Gaps = 6/97 (6%)
Query: 204 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDL-FETAKKQA 262
+ + LVGP G GK+ + + +A + ++ F+ IE G V DL E +
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD--SDQEIEKRTGADVGWVFDLEGEEGFRDR 62
Query: 263 PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLA 299
+ + + G A GG G+ + +T N+L A
Sbjct: 63 EEKVINELTEKQGIVLATGG---GSVKSRETRNRLSA 96
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 27.3 bits (59), Expect = 5.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 201 KIPKG--VLLVGPPGTGKTLLAKAVAG 225
K+P+G V L+G G GKT A+AG
Sbjct: 28 KVPRGQIVTLIGANGAGKTTTLSAIAG 54
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 26.9 bits (58), Expect = 6.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 201 KIPKGVLLVGPPGTGKTLLAKAVA 224
KIP ++LVG GTGKT A +A
Sbjct: 96 KIPYVIMLVGVQGTGKTTTAGKLA 119
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 26.9 bits (58), Expect = 6.9
Identities = 25/114 (21%), Positives = 51/114 (43%), Gaps = 6/114 (5%)
Query: 521 GMVSYYGMSSVSG-LMVLEKQRNAFLGGGYGSSREFSEK-TAEEMDLFIKNLLEERYKHV 578
GMV ++ +S +SG LMVL + L G+ + T E DL+I + +YK
Sbjct: 134 GMVPWHVVSGMSGTLMVLPRDG---LKDPAGAPLHYDRAYTIGEFDLYIPKGPDGKYKDY 190
Query: 579 KQTLSDYREAIEIMVKELFDKEVITGERVREIISEYEVANNLESRLIPLEEQAS 632
Y + +++M + L ++ +V + + ++ ++ + QA+
Sbjct: 191 ATLAESYGDTVQVM-RTLTPSHIVFNGKVGALTGANALTASVGETVLLIHSQAN 243
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 26.9 bits (58), Expect = 6.9
Identities = 25/115 (21%), Positives = 50/115 (42%), Gaps = 6/115 (5%)
Query: 520 KGMVSYYGMSSVSG-LMVLEKQRNAFLGGGYGSSREFSEK-TAEEMDLFIKNLLEERYKH 577
+GMV ++ +S +SG LMVL + L G + T E DL+I + +YK
Sbjct: 133 EGMVPWHVVSGMSGTLMVLPRDG---LKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKD 189
Query: 578 VKQTLSDYREAIEIMVKELFDKEVITGERVREIISEYEVANNLESRLIPLEEQAS 632
Y + +++M + L ++ +V + + + ++ + QA+
Sbjct: 190 YATLAESYGDTVQVM-RTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQAN 243
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 26.9 bits (58), Expect = 6.9
Identities = 25/115 (21%), Positives = 50/115 (42%), Gaps = 6/115 (5%)
Query: 520 KGMVSYYGMSSVSG-LMVLEKQRNAFLGGGYGSSREFSEK-TAEEMDLFIKNLLEERYKH 577
+GMV ++ +S +SG LMVL + L G + T E DL+I + +YK
Sbjct: 133 EGMVPWHVVSGMSGTLMVLPRDG---LKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKD 189
Query: 578 VKQTLSDYREAIEIMVKELFDKEVITGERVREIISEYEVANNLESRLIPLEEQAS 632
Y + +++M + L ++ +V + + + ++ + QA+
Sbjct: 190 YATLAESYGDTVQVM-RTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQAN 243
>pdb|1PYP| Inorganic Pyrophosphatase (E.C.3.6.1.1)
Length = 285
Score = 26.9 bits (58), Expect = 6.9
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 50 NVSYHEIKQLISNNEVENVSIGQTLIKASHKEGNNRVIYIAKRVPDLTLVPLLDEKKINY 109
NVS+ E K + NN ++ + IG+T+ K V L ++ LLDE + ++
Sbjct: 103 NVSHPETKAVGDNNPIDVLQIGETIAYTGQ----------VKEVKALGIMALLDEGETDW 152
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
Length = 336
Score = 26.9 bits (58), Expect = 6.9
Identities = 25/115 (21%), Positives = 50/115 (42%), Gaps = 6/115 (5%)
Query: 520 KGMVSYYGMSSVSG-LMVLEKQRNAFLGGGYGSSREFSEK-TAEEMDLFIKNLLEERYKH 577
+GMV ++ +S +SG LMVL + L G + T E DL+I + +YK
Sbjct: 133 EGMVPWHVVSGMSGTLMVLPRDG---LKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKD 189
Query: 578 VKQTLSDYREAIEIMVKELFDKEVITGERVREIISEYEVANNLESRLIPLEEQAS 632
Y + +++M + L ++ +V + + + ++ + QA+
Sbjct: 190 YATLAESYGDTVQVM-RTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQAN 243
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 26.6 bits (57), Expect = 9.0
Identities = 25/115 (21%), Positives = 49/115 (41%), Gaps = 6/115 (5%)
Query: 520 KGMVSYYGMSSVSG-LMVLEKQRNAFLGGGYGSSREFSEK-TAEEMDLFIKNLLEERYKH 577
+GMV ++ +S SG LMVL + L G + T E DL+I + +YK
Sbjct: 133 EGMVPWHVVSGASGTLMVLPRDG---LKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKD 189
Query: 578 VKQTLSDYREAIEIMVKELFDKEVITGERVREIISEYEVANNLESRLIPLEEQAS 632
Y + +++M + L ++ +V + + + ++ + QA+
Sbjct: 190 YATLAESYGDTVQVM-RTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQAN 243
>pdb|1BA3| Firefly Luciferase In Complex With Bromoform
pdb|1LCI| Firefly Luciferase
Length = 550
Score = 26.6 bits (57), Expect = 9.0
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 65 VENVSIGQTLIKASHKEGNNRVIYIAKRVPDLTLVPLLDEKKINYSGFSESNFF 118
+ +++I Q + K+G +++ + K++P + + ++D K +Y GF F
Sbjct: 115 LNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD-SKTDYQGFQSMYTF 167
>pdb|1BQ5| Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 26.6 bits (57), Expect = 9.0
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 520 KGMVSYYGMSSVSG-LMVLEKQRNAFLGGGYGSSREFSEK-TAEEMDLFIKNLLEERYKH 577
+GMV ++ +S +SG LMVL + L G + T E DL+I + +YK
Sbjct: 139 EGMVPWHVVSGMSGTLMVLPRDG---LKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKD 195
Query: 578 VKQTLSDYREAIEIM 592
Y + +++M
Sbjct: 196 YATLAESYGDTVQVM 210
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.136 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,495,783
Number of Sequences: 13198
Number of extensions: 150405
Number of successful extensions: 399
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 46
length of query: 632
length of database: 2,899,336
effective HSP length: 94
effective length of query: 538
effective length of database: 1,658,724
effective search space: 892393512
effective search space used: 892393512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)