BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645684|ref|NP_207861.1| hypothetical protein
[Helicobacter pylori 26695]
         (84 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1JF2|A  Chain A, Crystal Structure Of W92f Obelin Mutant...    23  7.4
pdb|1EL4|A  Chain A, Structure Of The Calcium-Regulated Phot...    23  7.4
pdb|1QGK|A  Chain A, Structure Of Importin Beta Bound To The...    23  7.4
pdb|1BKD|S  Chain S, Complex Of Human H-Ras With Human Sos-1       23  7.4

>pdb|1JF2|A Chain A, Crystal Structure Of W92f Obelin Mutant From Obelia
          Longissima At 1.72 Angstrom Resolution
          Length = 195

 Score = 22.7 bits (47), Expect = 7.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 17 KHSVCLKLFFRFC 29
          +H VC++ FFR C
Sbjct: 63 RHQVCVEAFFRGC 75



>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
          Determined By Sulfur Sas
          Length = 195

 Score = 22.7 bits (47), Expect = 7.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 17 KHSVCLKLFFRFC 29
          +H VC++ FFR C
Sbjct: 63 RHQVCVEAFFRGC 75



>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
           Importin Alpha
 pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
           Importin Alpha (Ii Crystal Form, Grown At Low Ph)
          Length = 876

 Score = 22.7 bits (47), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (58%)

Query: 1   MLAYKQIFDKGLKPYYKHSVCL 22
           M A+K     GLK Y ++ VCL
Sbjct: 647 MEAFKPFLGIGLKNYAEYQVCL 668



>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
          Length = 439

 Score = 22.7 bits (47), Expect = 7.4
 Identities = 10/35 (28%), Positives = 18/35 (50%)

Query: 5   KQIFDKGLKPYYKHSVCLKLFFRFCFLKTHAYQQR 39
           K+I    L    +H+  L L+F  C ++T   ++R
Sbjct: 209 KEINSPNLLKMIRHTTNLTLWFEKCIVETENLEER 243



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.339    0.149    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,066
Number of Sequences: 13198
Number of extensions: 12185
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 4
length of query: 84
length of database: 2,899,336
effective HSP length: 60
effective length of query: 24
effective length of database: 2,107,456
effective search space: 50578944
effective search space used: 50578944
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 46 (22.3 bits)