BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645685|ref|NP_207862.1| phosphatidylserine synthase
(pssA) [Helicobacter pylori 26695]
         (237 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1GR3|A  Chain A, Structure Of The Human Collagen X Nc1 T...    26  4.6

>pdb|1GR3|A Chain A, Structure Of The Human Collagen X Nc1 Trimer
          Length = 160

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 23/64 (35%), Positives = 24/64 (36%), Gaps = 14/64 (21%)

Query: 74  IAFGVAPSLIAYFYVGYNFGRIGMAVSALFVIFGAIRLARFNISTNTSDPYSFIGIPIPA 133
           I  G  PSL     V  N G  GM VSA  VI               S  Y  IG PIP 
Sbjct: 6   IKAGQRPSLSGTPLVSANQGVTGMPVSAFTVIL--------------SKAYPAIGTPIPF 51

Query: 134 AAVL 137
             +L
Sbjct: 52  DKIL 55



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.333    0.148    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,220,761
Number of Sequences: 13198
Number of extensions: 45376
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 1
length of query: 237
length of database: 2,899,336
effective HSP length: 85
effective length of query: 152
effective length of database: 1,777,506
effective search space: 270180912
effective search space used: 270180912
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (25.0 bits)